Effective results for Methylocystis sp. ATCC 49242 (eggnog40)
Summary
Number of putative secreted proteins: 333
- Predicted by T4SEpre: 97
- Predicted by EffectiveELD: 38 eukaryotic-like domains, contained in 255 proteins (77 high, 178 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): Type IV
Protein based results
Putative secreted proteins (weak evidence indicated by parentheses)
| Protein | EffectiveT3 | EffectiveCCBD | T4SEpre | EffectiveELD | Predotar |
|---|---|---|---|---|---|
| 622637.Met49242DRAFT_4408 | + | (PF13276) PF13683 | mitochondrial | ||
| 622637.Met49242DRAFT_4502 | + | (PF13276) PF13683 | mitochondrial | ||
| 622637.Met49242DRAFT_1515 | (PF13276) PF13683 | mitochondrial | |||
| 622637.Met49242DRAFT_0116 | + | (PF02012) | ER | ||
| 622637.Met49242DRAFT_3000 | (PF13276) PF13683 | mitochondrial | |||
| 622637.Met49242DRAFT_4166 | (PF13276) PF13683 | mitochondrial | |||
| 622637.Met49242DRAFT_2223 | (PF13276) PF13683 | mitochondrial | |||
| 622637.Met49242DRAFT_4525 | (PF13276) PF13683 | mitochondrial; (mitochondrial) | |||
| 622637.Met49242DRAFT_1768 | (PF13358) | (mitochondrial) | |||
| 622637.Met49242DRAFT_3925 | (PF01695) | ER | |||
| 622637.Met49242DRAFT_3682 | + | ER | |||
| 622637.Met49242DRAFT_4243 | + | mitochondrial; (mitochondrial) | |||
| 622637.Met49242DRAFT_4060 | (PF01609) | ER | |||
| 622637.Met49242DRAFT_3464 | (PF06480) | ER | |||
| 622637.Met49242DRAFT_2898 | + | ER | |||
| 622637.Met49242DRAFT_0962 | (PF13358) | (mitochondrial) | |||
| 622637.Met49242DRAFT_1212 | (PF13539) | ER | |||
| 622637.Met49242DRAFT_2321 | + | ER | |||
| 622637.Met49242DRAFT_2438 | + | (ER); (mitochondrial) | |||
| 622637.Met49242DRAFT_4275 | (PF06480) | ER | |||
| 622637.Met49242DRAFT_0107 | + | ER | |||
| 622637.Met49242DRAFT_0973 | + | ER; (ER) | |||
| 622637.Met49242DRAFT_3110 | (PF00589) | (mitochondrial) | |||
| 622637.Met49242DRAFT_3067 | (PF00589) | mitochondrial; (mitochondrial) | |||
| 622637.Met49242DRAFT_4139 | + | ER | |||
| 622637.Met49242DRAFT_3800 | PF01527 | (mitochondrial) | |||
| 622637.Met49242DRAFT_3254 | (PF13358) | (mitochondrial) | |||
| 622637.Met49242DRAFT_1436 | (PF06472) | ER | |||
| 622637.Met49242DRAFT_0638 | + | ER | |||
| 622637.Met49242DRAFT_1881 | + | ER | |||
| 622637.Met49242DRAFT_1258 | (PF00589) | (mitochondrial) | |||
| 622637.Met49242DRAFT_1380 | + | (mitochondrial) | |||
| 622637.Met49242DRAFT_1899 | (PF00589) | (mitochondrial); mitochondrial | |||
| 622637.Met49242DRAFT_3631 | (PF02195) | (mitochondrial) | |||
| 622637.Met49242DRAFT_4549 | (PF06480) | ER | |||
| 622637.Met49242DRAFT_2879 | PF01527 | (mitochondrial) | |||
| 622637.Met49242DRAFT_0423 | (PF05990) | ER | |||
| 622637.Met49242DRAFT_0049 | + | ER | |||
| 622637.Met49242DRAFT_0714 | + | ER | |||
| 622637.Met49242DRAFT_2736 | (PF05990) | ER | |||
| 622637.Met49242DRAFT_0645 | PF01527 | (mitochondrial) | |||
| 622637.Met49242DRAFT_0706 | + | ER | |||
| 622637.Met49242DRAFT_0899 | (PF04577) | mitochondrial | |||
| 622637.Met49242DRAFT_0760 | + | ER | |||
| 622637.Met49242DRAFT_2108 | PF01527 | (mitochondrial) | |||
| 622637.Met49242DRAFT_3916 | + | ER | |||
| 622637.Met49242DRAFT_1611 | (PF05990) | ER | |||
| 622637.Met49242DRAFT_1109 | + | ER | |||
| 622637.Met49242DRAFT_1829 | (PF00036) | ER | |||
| 622637.Met49242DRAFT_3177 | + | (mitochondrial) | |||
| 622637.Met49242DRAFT_0081 | (PF10908) | mitochondrial; (mitochondrial) | |||
| 622637.Met49242DRAFT_4193 | (PF05406) | mitochondrial | |||
| 622637.Met49242DRAFT_3999 | PF01527 | (mitochondrial) | |||
| 622637.Met49242DRAFT_0874 | + | ER | |||
| 622637.Met49242DRAFT_3975 | (PF00589) | (mitochondrial) | |||
| 622637.Met49242DRAFT_2829 | (PF05548) | ER | |||
| 622637.Met49242DRAFT_4214 | (PF02195) | (mitochondrial) | |||
| 622637.Met49242DRAFT_2901 | + | ER | |||
| 622637.Met49242DRAFT_3988 | (PF06480) | ER | |||
| 622637.Met49242DRAFT_1120 | + | ER | |||
| 622637.Met49242DRAFT_3965 | (PF13276) PF13683 | (plastid) | |||
| 622637.Met49242DRAFT_1062 | + | ER | |||
| 622637.Met49242DRAFT_1806 | (PF13358) | (mitochondrial) | |||
| 622637.Met49242DRAFT_0364 | PF15336 | (mitochondrial) | |||
| 622637.Met49242DRAFT_2686 | + | mitochondrial | |||
| 622637.Met49242DRAFT_3792 | (PF00589) | (mitochondrial) | |||
| 622637.Met49242DRAFT_3887 | (PF01695) | ER; (ER) | |||
| 622637.Met49242DRAFT_3165 | + | ER | |||
| 622637.Met49242DRAFT_4523 | + | (mitochondrial); plastid | |||
| 622637.Met49242DRAFT_3438 | (PF06480) | ER | |||
| 622637.Met49242DRAFT_1005 | + | mitochondrial | |||
| 622637.Met49242DRAFT_3332 | PF13683 | ER | |||
| 622637.Met49242DRAFT_4005 | + | (mitochondrial) | |||
| 622637.Met49242DRAFT_4312 | (PF01695) | ER | |||
| 622637.Met49242DRAFT_1174 | (PF10908) | mitochondrial | |||
| 622637.Met49242DRAFT_3937 | (PF06472) | (mitochondrial); (plastid) | |||
| 622637.Met49242DRAFT_1943 | PF01527 | mitochondrial; (mitochondrial) | |||
| 622637.Met49242DRAFT_3457 | PF01150 | ER; (ER) | |||
| 622637.Met49242DRAFT_3219 | (PF00589) | mitochondrial | |||
| 622637.Met49242DRAFT_3131 | (PF01695) | (ER) | |||
| 622637.Met49242DRAFT_0006 | (PF01695) | (ER) | |||
| 622637.Met49242DRAFT_4245 | (PF13384) | mitochondrial; not used | |||
| 622637.Met49242DRAFT_3580 | (PF02195) | (plastid) | |||
| 622637.Met49242DRAFT_0590 | (PF01695) | (ER) | |||
| 622637.Met49242DRAFT_4596 | (PF01695) | (ER) | |||
| 622637.Met49242DRAFT_1517 | (PF01695) | (ER) | |||
| 622637.Met49242DRAFT_4282 | (PF13358) | (plastid) | |||
| 622637.Met49242DRAFT_3655 | (PF00589) | (mitochondrial) | |||
| 622637.Met49242DRAFT_3657 | (PF13358) PF00292 | ||||
| 622637.Met49242DRAFT_4631 | (PF13384) | mitochondrial; not used | |||
| 622637.Met49242DRAFT_2715 | (PF00589) | (plastid) | |||
| 622637.Met49242DRAFT_3710 | PF05028 | (mitochondrial) | |||
| 622637.Met49242DRAFT_2842 | (PF01695) | (ER) | |||
| 622637.Met49242DRAFT_4154 | + | PF01527 | |||
| 622637.Met49242DRAFT_2878 | + | (mitochondrial) | |||
| 622637.Met49242DRAFT_0652 | (PF00589) | (mitochondrial) | |||
| 622637.Met49242DRAFT_3830 | (PF13384) | mitochondrial; not used | |||
| 622637.Met49242DRAFT_4177 | + | (PF02195) | |||
| 622637.Met49242DRAFT_2126 | + | (plastid) | |||
| 622637.Met49242DRAFT_3343 | (PF13358) PF00292 | ||||
| 622637.Met49242DRAFT_4183 | (PF02195) | (mitochondrial) | |||
| 622637.Met49242DRAFT_1913 | (PF01209) | (plastid) | |||
| 622637.Met49242DRAFT_4297 | (PF03050) | (mitochondrial) | |||
| 622637.Met49242DRAFT_4575 | (PF13276) PF13683 | not used | |||
| 622637.Met49242DRAFT_2565 | PF13481 | (plastid) | |||
| 622637.Met49242DRAFT_0467 | + | (mitochondrial) | |||
| 622637.Met49242DRAFT_2227 | (PF01695) | (ER) | |||
| 622637.Met49242DRAFT_2824 | (PF01695) | (mitochondrial) | |||
| 622637.Met49242DRAFT_1008 | (PF00589) | (plastid) | |||
| 622637.Met49242DRAFT_3330 | + | PF01527 | |||
| 622637.Met49242DRAFT_4003 | PF01231 | (plastid) | |||
| 622637.Met49242DRAFT_3842 | (PF02012) | (ER) | |||
| 622637.Met49242DRAFT_4075 | (PF01609) | ||||
| 622637.Met49242DRAFT_2946 | + | ||||
| 622637.Met49242DRAFT_2893 | (PF00589) | ||||
| 622637.Met49242DRAFT_1767 | PF00292 | ||||
| 622637.Met49242DRAFT_0828 | (PF00847) | ||||
| 622637.Met49242DRAFT_0825 | + | ||||
| 622637.Met49242DRAFT_3562 | + | ||||
| 622637.Met49242DRAFT_3859 | PF13683 | ||||
| 622637.Met49242DRAFT_2400 | (PF00589) | ||||
| 622637.Met49242DRAFT_3681 | (PF01609) | ||||
| 622637.Met49242DRAFT_1570 | (PF04998) | ||||
| 622637.Met49242DRAFT_0003 | (PF00589) | ||||
| 622637.Met49242DRAFT_3594 | (PF05406) | ||||
| 622637.Met49242DRAFT_4485 | PF01527 | ||||
| 622637.Met49242DRAFT_4487 | (PF03050) | ||||
| 622637.Met49242DRAFT_3599 | (PF02195) | ||||
| 622637.Met49242DRAFT_4483 | (PF00589) | ||||
| 622637.Met49242DRAFT_2522 | + | ||||
| 622637.Met49242DRAFT_4248 | (PF01209) | ||||
| 622637.Met49242DRAFT_1220 | (PF02371) | ||||
| 622637.Met49242DRAFT_3469 | PF13481 | ||||
| 622637.Met49242DRAFT_2880 | (PF13276) | ||||
| 622637.Met49242DRAFT_0766 | + | ||||
| 622637.Met49242DRAFT_0963 | PF00292 | ||||
| 622637.Met49242DRAFT_1217 | (PF02371) | ||||
| 622637.Met49242DRAFT_1962 | (PF01609) | ||||
| 622637.Met49242DRAFT_1219 | (PF01609) | ||||
| 622637.Met49242DRAFT_3129 | (PF00589) | ||||
| 622637.Met49242DRAFT_2188 | + | ||||
| 622637.Met49242DRAFT_2507 | (PF13539) | ||||
| 622637.Met49242DRAFT_3275 | PF13683 | ||||
| 622637.Met49242DRAFT_4477 | PF01527 | not used | |||
| 622637.Met49242DRAFT_4293 | PF01527 | ||||
| 622637.Met49242DRAFT_1695 | (PF00589) | ||||
| 622637.Met49242DRAFT_4295 | (PF03050) | ||||
| 622637.Met49242DRAFT_4614 | PF01527 | ||||
| 622637.Met49242DRAFT_4612 | PF01527 | ||||
| 622637.Met49242DRAFT_4618 | (PF02371) | ||||
| 622637.Met49242DRAFT_3473 | (PF00589) | ||||
| 622637.Met49242DRAFT_4051 | (PF02371) | ||||
| 622637.Met49242DRAFT_4050 | (PF13358) | ||||
| 622637.Met49242DRAFT_1747 | (PF13358) | ||||
| 622637.Met49242DRAFT_1749 | PF13683 | not used | |||
| 622637.Met49242DRAFT_0592 | + | not used | |||
| 622637.Met49242DRAFT_0593 | + | ||||
| 622637.Met49242DRAFT_1222 | + | ||||
| 622637.Met49242DRAFT_2198 | PF13481 | ||||
| 622637.Met49242DRAFT_1519 | (PF01609) | ||||
| 622637.Met49242DRAFT_1514 | PF01527 | ||||
| 622637.Met49242DRAFT_1516 | (PF02371) | ||||
| 622637.Met49242DRAFT_4466 | (PF01695) | ||||
| 622637.Met49242DRAFT_4280 | (PF02195) | ||||
| 622637.Met49242DRAFT_4048 | (PF02371) | ||||
| 622637.Met49242DRAFT_1348 | PF00292 | ||||
| 622637.Met49242DRAFT_1239 | + | ||||
| 622637.Met49242DRAFT_2299 | + | ||||
| 622637.Met49242DRAFT_2298 | (PF01442) | ||||
| 622637.Met49242DRAFT_3654 | + | ||||
| 622637.Met49242DRAFT_1501 | + | ||||
| 622637.Met49242DRAFT_4457 | PF01527 | ||||
| 622637.Met49242DRAFT_3253 | PF00292 | ||||
| 622637.Met49242DRAFT_0120 | + | ||||
| 622637.Met49242DRAFT_0127 | + | ||||
| 622637.Met49242DRAFT_4630 | (PF13358) | not used | |||
| 622637.Met49242DRAFT_4637 | PF13481 | not used | |||
| 622637.Met49242DRAFT_4601 | PF13683 | not used | |||
| 622637.Met49242DRAFT_0631 | + | ||||
| 622637.Met49242DRAFT_3823 | + | ||||
| 622637.Met49242DRAFT_1247 | (PF13358) | ||||
| 622637.Met49242DRAFT_3816 | (PF04519) | ||||
| 622637.Met49242DRAFT_1884 | + | ||||
| 622637.Met49242DRAFT_2066 | (PF01609) | ||||
| 622637.Met49242DRAFT_2067 | (PF02371) | ||||
| 622637.Met49242DRAFT_2068 | (PF00589) | ||||
| 622637.Met49242DRAFT_4446 | + | not used | |||
| 622637.Met49242DRAFT_4620 | PF13481 | ||||
| 622637.Met49242DRAFT_4621 | PF13481 | ||||
| 622637.Met49242DRAFT_2844 | (PF01609) | ||||
| 622637.Met49242DRAFT_4157 | (PF13358) | ||||
| 622637.Met49242DRAFT_4153 | (PF13358) | ||||
| 622637.Met49242DRAFT_0625 | (PF01609) | ||||
| 622637.Met49242DRAFT_0627 | (PF03050) | ||||
| 622637.Met49242DRAFT_1095 | (PF14022) | ||||
| 622637.Met49242DRAFT_1478 | + | ||||
| 622637.Met49242DRAFT_3265 | + | ||||
| 622637.Met49242DRAFT_3082 | + | ||||
| 622637.Met49242DRAFT_3380 | PF13481 | ||||
| 622637.Met49242DRAFT_2724 | + | ||||
| 622637.Met49242DRAFT_2653 | (PF01609) | ||||
| 622637.Met49242DRAFT_3708 | PF04406 | ||||
| 622637.Met49242DRAFT_4439 | (PF13276) | ||||
| 622637.Met49242DRAFT_4548 | PF13683 | not used | |||
| 622637.Met49242DRAFT_4380 | (PF01695) | not used | |||
| 622637.Met49242DRAFT_4367 | (PF00589) | ||||
| 622637.Met49242DRAFT_4366 | (PF00589) | ||||
| 622637.Met49242DRAFT_4063 | + | ||||
| 622637.Met49242DRAFT_4169 | (PF03050) | ||||
| 622637.Met49242DRAFT_4163 | PF01527 | ||||
| 622637.Met49242DRAFT_4167 | PF01527 | ||||
| 622637.Met49242DRAFT_4165 | PF01527 | ||||
| 622637.Met49242DRAFT_4164 | (PF13276) | ||||
| 622637.Met49242DRAFT_3834 | (PF01609) | ||||
| 622637.Met49242DRAFT_3831 | (PF03050) | ||||
| 622637.Met49242DRAFT_1843 | + | ||||
| 622637.Met49242DRAFT_2399 | + | ||||
| 622637.Met49242DRAFT_1289 | (PF04577) | ||||
| 622637.Met49242DRAFT_2268 | + | ||||
| 622637.Met49242DRAFT_1286 | + | ||||
| 622637.Met49242DRAFT_2485 | (PF02195) | ||||
| 622637.Met49242DRAFT_3968 | PF01527 | ||||
| 622637.Met49242DRAFT_3288 | + | ||||
| 622637.Met49242DRAFT_3519 | PF13481 | ||||
| 622637.Met49242DRAFT_3512 | (PF00589) | ||||
| 622637.Met49242DRAFT_4552 | (PF01695) | not used | |||
| 622637.Met49242DRAFT_4551 | (PF01695) | ||||
| 622637.Met49242DRAFT_4557 | (PF13276) | ||||
| 622637.Met49242DRAFT_3603 | (PF00589) | ||||
| 622637.Met49242DRAFT_4558 | PF01527 | ||||
| 622637.Met49242DRAFT_3356 | (PF00589) | ||||
| 622637.Met49242DRAFT_4394 | (PF04577) | ||||
| 622637.Met49242DRAFT_2728 | + | ||||
| 622637.Met49242DRAFT_4174 | (PF00589) | ||||
| 622637.Met49242DRAFT_4175 | (PF14022) | ||||
| 622637.Met49242DRAFT_4176 | + | ||||
| 622637.Met49242DRAFT_4170 | (PF01695) | ||||
| 622637.Met49242DRAFT_3709 | PF09239 | ||||
| 622637.Met49242DRAFT_1276 | (PF02371) | ||||
| 622637.Met49242DRAFT_1074 | PF08557 | ||||
| 622637.Met49242DRAFT_0090 | + | ||||
| 622637.Met49242DRAFT_2105 | (PF03050) | ||||
| 622637.Met49242DRAFT_4566 | PF13683 | ||||
| 622637.Met49242DRAFT_4564 | PF01527 | not used | |||
| 622637.Met49242DRAFT_3340 | (PF01695) | ||||
| 622637.Met49242DRAFT_4342 | (PF02371) | ||||
| 622637.Met49242DRAFT_4340 | PF01527 | not used | |||
| 622637.Met49242DRAFT_4185 | (PF05406) | ||||
| 622637.Met49242DRAFT_4186 | (PF00589) | not used | |||
| 622637.Met49242DRAFT_0405 | (PF01609) | ||||
| 622637.Met49242DRAFT_2999 | PF01527 | ||||
| 622637.Met49242DRAFT_4607 | PF13683 | not used | |||
| 622637.Met49242DRAFT_2027 | + | ||||
| 622637.Met49242DRAFT_3197 | (PF16565) | ||||
| 622637.Met49242DRAFT_3196 | PF01527 | ||||
| 622637.Met49242DRAFT_3194 | (PF03050) | ||||
| 622637.Met49242DRAFT_4409 | PF01527 | ||||
| 622637.Met49242DRAFT_4579 | (PF03050) | not used | |||
| 622637.Met49242DRAFT_4572 | (PF00589) | ||||
| 622637.Met49242DRAFT_2805 | (PF01609) | ||||
| 622637.Met49242DRAFT_2803 | (PF04998) | ||||
| 622637.Met49242DRAFT_3998 | (PF13276) | ||||
| 622637.Met49242DRAFT_0872 | (PF00589) | ||||
| 622637.Met49242DRAFT_3970 | (PF03050) | ||||
| 622637.Met49242DRAFT_3976 | (PF00589) | ||||
| 622637.Met49242DRAFT_3250 | + | ||||
| 622637.Met49242DRAFT_2569 | (PF00589) | ||||
| 622637.Met49242DRAFT_3182 | (PF13384) | not used | |||
| 622637.Met49242DRAFT_3748 | PF01527 | ||||
| 622637.Met49242DRAFT_3742 | (PF13358) | ||||
| 622637.Met49242DRAFT_3743 | (PF13358) | ||||
| 622637.Met49242DRAFT_3740 | + | ||||
| 622637.Met49242DRAFT_1457 | + | ||||
| 622637.Met49242DRAFT_2761 | + | ||||
| 622637.Met49242DRAFT_4325 | (PF02195) | ||||
| 622637.Met49242DRAFT_4321 | (PF03050) | ||||
| 622637.Met49242DRAFT_4329 | PF13683 | ||||
| 622637.Met49242DRAFT_4219 | (PF13539) | ||||
| 622637.Met49242DRAFT_1632 | (PF00589) | ||||
| 622637.Met49242DRAFT_0461 | + | ||||
| 622637.Met49242DRAFT_0990 | (PF13875) | ||||
| 622637.Met49242DRAFT_1361 | + | ||||
| 622637.Met49242DRAFT_3966 | PF01527 | ||||
| 622637.Met49242DRAFT_2224 | PF01527 | ||||
| 622637.Met49242DRAFT_1805 | PF00292 | ||||
| 622637.Met49242DRAFT_3063 | PF13481 | ||||
| 622637.Met49242DRAFT_3795 | (PF13384) | ||||
| 622637.Met49242DRAFT_4518 | + | not used | |||
| 622637.Met49242DRAFT_4512 | (PF13358) | ||||
| 622637.Met49242DRAFT_4511 | (PF03050) | ||||
| 622637.Met49242DRAFT_0686 | + | ||||
| 622637.Met49242DRAFT_0684 | + | ||||
| 622637.Met49242DRAFT_2825 | PF00292 | ||||
| 622637.Met49242DRAFT_3422 | (PF01609) | not used | |||
| 622637.Met49242DRAFT_3421 | (PF01695) | ||||
| 622637.Met49242DRAFT_3420 | (PF02195) | ||||
| 622637.Met49242DRAFT_3221 | (PF00589) | ||||
| 622637.Met49242DRAFT_3220 | (PF00589) | ||||
| 622637.Met49242DRAFT_0044 | + | ||||
| 622637.Met49242DRAFT_3881 | (PF06472) | ||||
| 622637.Met49242DRAFT_1445 | + | ||||
| 622637.Met49242DRAFT_1320 | (PF01209) | ||||
| 622637.Met49242DRAFT_2214 | (PF04519) | ||||
| 622637.Met49242DRAFT_0213 | (PF01609) | ||||
| 622637.Met49242DRAFT_3764 | (PF01209) | ||||
| 622637.Met49242DRAFT_4526 | PF01527 | ||||
| 622637.Met49242DRAFT_4235 | PF01527 | ||||
| 622637.Met49242DRAFT_1696 | (PF04519) | ||||
| 622637.Met49242DRAFT_4302 | (PF02371) | not used | |||
| 622637.Met49242DRAFT_4300 | PF13683 | ||||
| 622637.Met49242DRAFT_3940 | (PF06472) | ||||
| 622637.Met49242DRAFT_3942 | (PF13276) | ||||
| 622637.Met49242DRAFT_3943 | PF01527 | ||||
| 622637.Met49242DRAFT_1310 | + | ||||
| 622637.Met49242DRAFT_2206 | (PF04519) | ||||
| 622637.Met49242DRAFT_1952 | (PF00589) | ||||
| 622637.Met49242DRAFT_4002 | PF01231 | ||||
| 622637.Met49242DRAFT_2971 | (PF02371) | ||||
| 622637.Met49242DRAFT_4318 | (PF02371) | ||||
| 622637.Met49242DRAFT_4319 | PF01527 | ||||
| 622637.Met49242DRAFT_0151 | (PF01609) | ||||
| 622637.Met49242DRAFT_1015 | PF01527 | ||||
| 622637.Met49242DRAFT_3849 | + | ||||
| 622637.Met49242DRAFT_3841 | (PF00589) | ||||
| 622637.Met49242DRAFT_1940 | (PF13384) | not used | |||
| 622637.Met49242DRAFT_2098 | (PF04577) | ||||
| 622637.Met49242DRAFT_2095 | + | ||||
| 622637.Met49242DRAFT_3145 | (PF01609) | ||||
| 622637.Met49242DRAFT_0302 | (PF02195) | ||||
| 622637.Met49242DRAFT_1540 | (PF01609) | ||||
| 622637.Met49242DRAFT_3214 | (PF02195) | ||||
| 622637.Met49242DRAFT_4493 | (PF13358) | not used | |||
| 622637.Met49242DRAFT_4254 | + |
Detailed merged results for each protein sequence
- Detailed merged results as table (merge_results.html)
- Detailed merged results as tab delimited file (merge_results.csv)
Individual results for each protein sequence
- T4SEpre bpbAac predictions (T4SEpre_bpbAac_FinalResult.csv)
- T4SEpre psAac predictions (T4SEpre_psAac_FinalResult.csv)
- EffectiveELD predictions (PROTEINS.ELD.TXT)
- Predotar predictions using animal/human model (Predotar_output_modelANIMAL.TXT)
- Predotar predictions using plant model (Predotar_output_modelPLANT.TXT)
Genome based results
Summary
- Gram negative: YES (FDR = 0.5 %)
- Functional Type III secretion system: NO (FDR = 12.5 %)
- Functional Type IV secretion system: YES (FDR = 7.2 %)
Estimated copy number = 2.5 (25/10 KEGG proteins)
- Functional Type VI secretion system: NO (FDR = 7.7 %)
Individual results for each secretion system
- List of 100 most important COGs/NOGs for prediction of functional Type III secretion system (T3_top100_COGS.xls)
- List of 100 most important COGs/NOGs for prediction of functional Type IV secretion system (T4_top100_COGS.xls)
- List of 100 most important COGs/NOGs for prediction of functional Type VI secretion system (T6_top100_COGS.xls)
- List of COGs assigned to Type III secretion system in KEGG (T3SS_KEGG_cmp.xls)
- List of COGs assigned to Type IV secretion system in KEGG (T4SS_KEGG_cmp.xls)
- List of COGs assigned to Type VI secretion system in KEGG (T6SS_KEGG_cmp.xls)
Parameters:
==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================
Estimated copy number = 2.5 (25/10 KEGG proteins)
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Contact
- +43 1 4277 76681
- +43 1 4277 876681
- contact.cube@univie.ac.at
