Metamenu

Genomes encoding eukaryotic-like proteins

PF01609 Transposase DDE domain

Copy number in non-pathogens:
Mean=1.57 Stddev=3.11

Genomes significantly enriched in this eukaryotic-like domain (ELD; score >= 4):

Genome Class* ELD score Number of proteins containing this domain
Escherichia coli O104:H4 str. 2011C-3493 s 4 15
Cellulosilyticum ruminicola JCM 14822 s 7 26
Porphyromonas gingivalis ATCC 33277 s 8 28
Microcystis aeruginosa NIES-843 s 12 39
Azospirillum sp. B510 s 4 15
Porphyromonas gingivalis TDC60 s 6 21
Xanthomonas oryzae pv. oryzae MAFF 311018 s 11 37
Xanthomonas fragariae s 29 94
Xanthomonas fragariae s 27 88
Xanthomonas fragariae s 29 92
Cupriavidus taiwanensis LMG 19424 s 5 20
Neisseria meningitidis alpha14 s 5 18
Mucinivorans hirudinis s 6 21
Bacteroides coprocola DSM 17136 s 8 28
Shigella sonnei 4822-66 s 7 24
Shigella sonnei str. Moseley s 4 15
Shigella dysenteriae 225-75 s 4 15
Shigella flexneri 2a str. 2457T s 4 16
Shigella boydii 5216-82 s 5 20
Neisseria meningitidis 93004 s 5 19
Xanthomonas fragariae LMG 25863 s 6 21
Lachnospiraceae bacterium M18-1 s 6 21
Clostridium sp. ASF502 s 5 19
Acinetobacter sp. NIPH 899 s 4 17
Frankia casuarinae s 5 18
Didymococcus colitermitum TAV2 s 4 16
Calothrix sp. PCC 7103 s 5 18
Pleurocapsa sp. PCC 7319 s 4 15
Piscirickettsia salmonis AUSTRAL-005 s 12 41
Acinetobacter baumannii 17534 s 4 15
Acinetobacter baumannii 472237-1196 s 5 18
Acinetobacter baumannii 942133 s 4 16
Acinetobacter baumannii 348935 s 4 16
Acinetobacter baumannii 1406750 s 4 16
Acinetobacter baumannii 1462234 s 4 17
Stigmatella aurantiaca DW4/3-1 s 4 15
Escherichia coli 53638 s 4 15
Shigella dysenteriae 1012 s 13 44
Rickettsia endosymbiont of Ixodes scapularis s 5 19
Streptomyces ipomoeae 91-03 s 9 30
Anaerobiospirillum succiniciproducens DSM 6400 s 4 15
Succinimonas amylolytica DSM 2873 s 7 24
Burkholderia sp. WSM4176 s 5 18
Lactobacillus crispatus FB077-07 s 4 16
Shigella boydii ATCC 9905 s 5 18
Sutterella wadsworthensis HGA0223 s 4 15
Xanthomonas oryzae pv. oryzae PXO99A s 12 39
Xanthomonas campestris pv. raphani 756C s 5 19
Shigella flexneri 2002017 s 4 17
Burkholderia glumae BGR1 s 8 29
Ralstonia solanacearum FQY_4 s 4 16
Stigmatella aurantiaca DW4/3-1 s 4 15
Shigella sonnei Ss046 s 4 16
Shigella flexneri 5 str. 8401 s 4 17
Mycobacterium liflandii 128FXT s 22 73
Escherichia coli P12b s 4 15
Shigella flexneri 2a str. 2457T s 4 16
Neisseria meningitidis M01-240355 s 5 18
Acaryochloris marina MBIC11017 s 7 24
Porphyromonas gingivalis s 9 31
Endozoicomonas montiporae s 10 33
Shigella sonnei s 5 18
Shigella flexneri s 5 18
Piscirickettsia salmonis s 19 63
Mycoplasma mycoides subsp. mycoides s 11 38
Mycoplasma mycoides subsp. mycoides s 12 39
Mycoplasma mycoides subsp. mycoides s 10 35
Photorhabdus temperata subsp. thracensis s 6 23
Burkholderia ubonensis s 5 18
Xanthomonas oryzae pv. oryzae s 12 40
Neisseria meningitidis s 5 19
Endozoicomonas ascidiicola s 10 34
Endozoicomonas ascidiicola s 8 28
Aeromonas caviae s 6 22
Xanthomonas oryzae pv. oryzae s 13 43
Xanthomonas oryzae pv. oryzae s 24 77
Xanthomonas oryzae pv. oryzae s 11 38
Xanthomonas oryzae pv. oryzae s 13 42
Xanthomonas oryzae pv. oryzae s 14 47
Xanthomonas oryzae pv. oryzae s 13 42
Xanthomonas oryzae pv. oryzae s 13 43
Xanthomonas oryzae pv. oryzae s 12 41
Xanthomonas oryzae pv. oryzae s 14 48
Piscirickettsia salmonis s 18 59
Piscirickettsia salmonis s 20 65
Piscirickettsia salmonis s 19 63
Piscirickettsia salmonis s 20 64
Piscirickettsia salmonis s 21 68
Piscirickettsia salmonis s 21 67
Piscirickettsia salmonis s 19 63
Piscirickettsia salmonis s 21 67
Piscirickettsia salmonis s 21 68
Piscirickettsia salmonis s 21 68
Piscirickettsia salmonis s 19 63
Escherichia coli s 5 20
Bacillus mycoides s 4 15
Desulfomicrobium orale DSM 12838 s 6 21
Mycoplasma mycoides subsp. mycoides s 10 35
Lactobacillus johnsonii s 4 15
Burkholderiales bacterium YL45 s 5 19
Lachnoclostridium sp. YL32 s 4 16
Neisseria meningitidis s 4 16
Neisseria meningitidis s 4 16
Neisseria meningitidis s 4 16
Neisseria sicca s 4 16
Streptomyces acidiscabies s 4 16
Ralstonia solanacearum FJAT-1458 s 4 16
Lactobacillus helveticus s 5 20
Lactobacillus helveticus s 5 19
Xanthomonas fragariae s 10 35
Xanthomonas fragariae s 10 35
Xanthomonas gardneri s 4 16
Xanthomonas gardneri s 5 20
Halomonas meridiana s 4 16
Halomonas meridiana s 4 16
Halomonas meridiana s 4 16
Staphylococcus haemolyticus s 4 16
Sinorhizobium meliloti s 5 19
Sinorhizobium meliloti 1021 s 5 19
Escherichia coli str. K-12 substr. MG1655 s 5 18
Xanthomonas campestris pv. campestris str. ATCC 33913 s 13 42
[Pseudomonas syringae] pv. tomato str. DC3000 s 13 43
Sinorhizobium fredii NGR234 s 5 20
Escherichia coli IAI39 s 4 15
Shigella flexneri 2a str. 301 s 10 33

*p=pathogen;s=symbiont