Metamenu

Genomes encoding eukaryotic-like proteins

PF13276 HTH-like domain

Copy number in non-pathogens:
Mean=0.80 Stddev=1.53

Genomes significantly enriched in this eukaryotic-like domain (ELD; score >= 4):

Genome Class* ELD score Number of proteins containing this domain
Sphingomonas-like bacterium B12 s 4 8
Lactobacillus fermentum IFO 3956 s 13 21
Solibacillus silvestris StLB046 s 7 12
Oscillibacter valericigenes Sjm18-20 s 11 18
Xanthomonas fragariae s 11 18
Xanthomonas fragariae s 6 10
Xanthomonas fragariae s 7 12
Stenotrophomonas maltophilia K279a s 4 7
Corynebacterium diphtheriae NCTC 13129 s 4 7
Ralstonia solanacearum PSI07 s 5 9
Shigella sonnei 53G s 17 27
Lactobacillus reuteri ATCC 53608 s 6 11
Mycobacterium canettii CIPT 140010059 s 6 10
Mycoplasma mycoides subsp. capri LC str. 95010 s 6 10
Ralstonia solanacearum GMI1000 s 7 12
Xanthomonas campestris pv. vesicatoria str. 85-10 s 4 7
Corynebacterium jeikeium K411 s 4 7
Bacillus andreraoultii s 4 8
Escherichia coli s 4 8
Escherichia coli s 6 10
Lactobacillus plantarum s 4 7
Klebsiella pneumoniae s 4 7
Klebsiella pneumoniae s 4 7
Klebsiella pneumoniae s 4 7
Klebsiella pneumoniae s 4 7
Klebsiella pneumoniae s 4 7
Klebsiella pneumoniae s 4 7
Mycobacterium chimaera s 4 7
Mucispirillum schaedleri ASF457 s 4 7
Ralstonia pickettii 12D s 4 7
Lactobacillus reuteri SD2112 s 4 7
Gordonia bronchialis DSM 43247 s 9 16
Neisseria mucosa ATCC 25996 s 4 8
Escherichia coli 2534-86 s 6 10
Shigella flexneri CCH060 s 28 45
Shigella sonnei 4822-66 s 19 30
Shigella sonnei str. Moseley s 14 23
Shigella sonnei 3233-85 s 13 22
Escherichia coli 900105 (10e) s 6 11
Escherichia coli DEC2C s 6 10
Escherichia coli DEC2D s 4 8
Escherichia coli DEC2E s 7 12
Escherichia coli MS 107-1 s 4 8
Escherichia coli DEC8E s 4 7
Escherichia coli DEC7E s 4 8
Escherichia coli DEC7A s 4 7
Escherichia coli DEC7B s 4 7
Escherichia coli DEC3A s 4 7
Escherichia coli DEC1D s 4 7
Escherichia coli DEC1C s 5 9
Escherichia coli DEC1A s 5 9
Escherichia coli DEC1B s 5 9
Escherichia coli DEC11E s 4 7
Paenibacillus larvae subsp. larvae BRL-230010 s 4 8
Burkholderia multivorans ATCC 17616 s 4 7
Methylobacterium sp. 4-46 s 4 7
[Clostridium] spiroforme DSM 1552 s 5 9
Shigella dysenteriae 225-75 s 20 32
Shigella boydii 4444-74 s 18 29
Acinetobacter sp. WC-487 s 5 9
Shigella flexneri 2a str. 2457T s 32 51
Shigella boydii 5216-82 s 26 41
Shigella flexneri VA-6 s 24 39
Shigella flexneri 4343-70 s 27 43
Escherichia coli OK1180 s 6 11
Streptococcus pneumoniae GA41538 s 4 7
Escherichia coli 2788150 s 4 8
Escherichia coli 2865200 s 5 9
Escherichia coli BCE007_MS-11 s 6 10
Escherichia coli P0299917.10 s 4 7
Escherichia coli P0299917.6 s 4 7
Escherichia coli P0299917.5 s 5 9
Escherichia coli P0302293.2 s 6 10
Escherichia coli KTE20 s 6 10
Enterorhabdus caecimuris B7 s 4 7
Oscillibacter sp. 1-3 s 4 7
Lactobacillus murinus ASF361 s 4 8
Burkholderia pseudomallei MSHR5858 s 4 7
Burkholderia pseudomallei HBPUB10303a s 4 7
Lactobacillus fermentum Lf1 s 9 15
Klebsiella pneumoniae MGH 30 s 4 7
Bordetella holmesii ATCC 51541 s 4 7
Bordetella holmesii 30539 s 4 7
Bordetella holmesii 35009 s 4 7
Bordetella holmesii 41130 s 5 9
Bordetella holmesii 70147 s 4 7
Bordetella holmesii 44057 s 4 8
Bordetella holmesii 1058 s 4 7
Sinorhizobium medicae WSM1115 s 4 7
Methylobacterium sp. WSM2598 s 6 10
Mucispirillum schaedleri ASF457 s 4 7
Lactobacillus fermentum 3872 s 14 23
Piscirickettsia salmonis AUSTRAL-005 s 13 21
Salmonella enterica subsp. enterica serovar Weltevreden str. HI_N05-537 s 4 7
Burkholderia pseudomallei Pasteur 52237 s 4 8
Escherichia coli 101-1 s 5 9
Escherichia coli B7A s 9 15
Burkholderia mallei 2002721280 s 6 10
Burkholderia pseudomallei S13 s 4 7
Shigella dysenteriae 1012 s 22 35
Burkholderia mallei ATCC 10399 s 4 8
Escherichia coli E110019 s 5 9
Escherichia coli TW10828 s 4 8
Escherichia coli PA22 s 6 10
Escherichia coli TW14425 s 4 8
Escherichia coli TW11681 s 7 12
Escherichia coli O157:H7 str. EC4486 s 4 7
Escherichia coli O157:H7 str. EC4113 s 4 7
Escherichia coli O157:H7 str. EC4076 s 4 8
Escherichia coli O157:H7 str. EC4196 s 4 7
Escherichia coli O157:H7 str. EC4501 s 4 8
Escherichia coli O157:H7 str. EC508 s 5 9
Bacillus cereus NVH0597-99 s 4 7
Bacillus cereus H3081.97 s 4 8
Escherichia coli 1.2741 s 6 10
Escherichia coli 3.2608 s 4 8
Leptospira noguchii str. 2001034031 s 4 7
Leptospira noguchii str. 1993005606 s 7 12
Escherichia coli 97.0246 s 18 29
Escherichia coli 4.0522 s 5 9
Escherichia coli 96.0497 s 4 8
Escherichia coli JB1-95 s 4 7
Escherichia coli 2.3916 s 4 7
Escherichia coli 97.0259 s 4 7
Burkholderia sp. WSM4176 s 5 9
Burkholderia pseudomallei 305 s 7 12
Lactobacillus crispatus FB077-07 s 5 9
Shigella flexneri 5a str. M90T s 27 43
Mycobacterium phlei RIVM601174 s 4 8
Escherichia coli NCCP15658 s 5 9
Burkholderia pseudomallei 576 s 5 9
Escherichia coli SEPT362 s 5 9
Escherichia coli O157:H7 str. 1044 s 4 7
Shigella boydii ATCC 9905 s 12 20
Escherichia coli O157:H7 str. 1125 s 4 8
Shigella dysenteriae CDC 74-1112 s 14 23
Klebsiella pneumoniae CHS 09 s 4 7
Corynebacterium sp. KPL1859 s 6 10
Corynebacterium sp. KPL1855 s 5 9
Corynebacterium sp. KPL1824 s 4 8
Corynebacterium sp. KPL1818 s 6 11
Corynebacterium sp. KPL1814 s 4 8
Desulfovibrio termitidis HI1 s 5 9
Paenibacillus larvae subsp. larvae DSM 25719 s 11 19
Frankia sp. EAN1pec s 4 7
Burkholderia cenocepacia MC0-3 s 6 10
Xanthomonas oryzae pv. oryzae PXO99A s 4 7
Xanthomonas campestris pv. raphani 756C s 5 9
Lactobacillus reuteri I5007 s 7 13
Shigella flexneri 2002017 s 36 57
Xanthomonas campestris pv. campestris str. 8004 s 11 18
Burkholderia glumae BGR1 s 6 10
Mycoplasma hyorhinis HUB-1 s 4 7
Mycoplasma bovis Hubei-1 s 4 7
Pseudomonas aeruginosa PA7 s 4 7
Shigella boydii Sb227 s 21 33
Shigella sonnei Ss046 s 18 29
Shigella flexneri 5 str. 8401 s 25 40
Aeromonas salmonicida subsp. salmonicida A449 s 4 7
Acidaminococcus intestini RyC-MR95 s 4 8
Mycoplasma bovis HB0801 s 4 8
Burkholderia mallei NCTC 10229 s 4 8
Burkholderia pseudomallei 1710b s 5 9
Shigella boydii CDC 3083-94 s 19 31
Burkholderia pseudomallei 1106a s 4 7
Escherichia coli O157:H7 str. EDL933 s 7 12
Shigella flexneri 2a str. 2457T s 24 39
Lactobacillus fermentum CECT 5716 s 9 15
Rhizobium tropici CIAT 899 s 4 8
Burkholderia pseudomallei 1026b s 6 10
Corynebacterium jeikeium s 7 12
Corynebacterium jeikeium s 4 8
Spiroplasma apis B31 s 4 7
Paenibacillus larvae subsp. larvae DSM 25430 s 8 14
Lactobacillus salivarius s 4 7
Ruminococcus sp. NK3A76 s 7 13
Burkholderia mallei s 4 8
Burkholderia mallei s 9 15
Burkholderia mallei s 5 9
Burkholderia mallei NCTC 10247 s 7 12
Burkholderia mallei s 15 24
Burkholderia mallei s 9 15
Burkholderia mallei s 5 9
Burkholderia mallei s 6 10
Burkholderia mallei s 28 45
Burkholderia mallei s 28 45
Burkholderia pseudomallei s 4 7
Burkholderia pseudomallei s 4 7
Burkholderia pseudomallei s 4 7
Burkholderia mallei s 4 7
Burkholderia pseudomallei s 4 7
Burkholderia pseudomallei s 4 7
Burkholderia pseudomallei 576 s 4 8
Burkholderia pseudomallei MSHR5855 s 4 8
Burkholderia pseudomallei s 6 10
Burkholderia pseudomallei HBPUB10303a s 4 7
Burkholderia pseudomallei s 4 7
Raoultella planticola s 4 7
Klebsiella michiganensis s 4 8
Shigella sonnei s 13 21
Shigella flexneri s 29 46
Burkholderia mallei s 7 13
Bordetella holmesii F627 s 4 7
Bordetella holmesii H558 s 4 7
Shigella flexneri 2003036 s 13 22
Shigella flexneri Shi06HN006 s 18 29
Burkholderia mallei s 4 8
Piscirickettsia salmonis s 15 24
Burkholderia pseudomallei 7894 s 4 7
Burkholderia mallei s 8 14
Mycoplasma bovis CQ-W70 s 4 7
Burkholderia pseudomallei 1026b s 4 7
Burkholderia mallei s 5 9
Burkholderia mallei s 11 18
Mycoplasma mycoides subsp. mycoides s 10 17
Lactobacillus helveticus s 6 10
Escherichia coli s 4 7
Burkholderia mallei s 4 7
Shigella boydii 08-0009 s 19 30
Klebsiella pneumoniae s 4 7
Mycoplasma mycoides subsp. mycoides s 10 17
Mycoplasma mycoides subsp. mycoides s 9 16
Burkholderia pseudomallei s 4 7
Burkholderia pseudomallei s 4 7
Burkholderia pseudomallei s 7 12
Bacillus cereus s 7 12
Bacillus cereus s 4 7
Lactobacillus plantarum s 5 9
Burkholderia pseudomallei s 6 10
Burkholderia pseudomallei s 5 9
Lactobacillus fermentum s 7 12
Klebsiella pneumoniae s 4 7
Corynebacterium striatum s 4 7
Mycoplasma mycoides subsp. mycoides s 7 13
Lactobacillus rhamnosus s 4 8
Pantoea ananatis s 4 7
Lactobacillus reuteri s 7 13
Lactobacillus helveticus s 4 7
Escherichia coli s 4 7
Escherichia coli s 4 8
Klebsiella pneumoniae s 4 8
Lactobacillus plantarum s 4 8
Weissella cibaria s 6 10
Lactobacillus gallinarum s 7 13
Burkholderia pseudomallei s 4 7
Burkholderia pseudomallei s 4 7
Burkholderia pseudomallei s 4 7
Burkholderia pseudomallei s 4 7
Burkholderia pseudomallei s 4 7
Burkholderia pseudomallei s 4 7
Burkholderia pseudomallei s 4 7
Burkholderia pseudomallei s 4 7
Burkholderia pseudomallei s 4 7
Burkholderia pseudomallei s 4 7
Burkholderia pseudomallei s 4 7
Burkholderia pseudomallei s 4 7
Burkholderia pseudomallei s 4 7
Burkholderia pseudomallei s 4 7
Burkholderia pseudomallei s 4 7
Burkholderia pseudomallei s 4 7
Burkholderia pseudomallei s 4 7
Burkholderia pseudomallei s 4 7
Burkholderia pseudomallei s 4 7
Burkholderia pseudomallei s 4 7
Burkholderia pseudomallei s 4 7
Burkholderia pseudomallei s 4 7
Burkholderia pseudomallei s 4 7
Xanthomonas oryzae pv. oryzae s 4 7
Piscirickettsia salmonis s 15 24
Piscirickettsia salmonis s 16 26
Piscirickettsia salmonis s 4 8
Piscirickettsia salmonis s 4 7
Piscirickettsia salmonis s 4 7
Piscirickettsia salmonis s 8 14
Piscirickettsia salmonis s 15 25
Piscirickettsia salmonis s 16 26
Piscirickettsia salmonis s 16 26
Piscirickettsia salmonis s 16 26
Piscirickettsia salmonis s 15 24
Piscirickettsia salmonis s 15 24
Piscirickettsia salmonis s 16 26
Piscirickettsia salmonis s 16 26
Piscirickettsia salmonis s 16 26
Escherichia coli s 4 7
Streptomyces scabiei s 4 8
Mycoplasma mycoides subsp. mycoides s 11 18
Mycoplasma mycoides subsp. mycoides s 13 22
Mycoplasma mycoides subsp. mycoides s 6 11
Escherichia coli s 4 8
Escherichia coli s 4 7
Mycobacterium chimaera s 4 8
Mycobacterium chimaera s 4 8
Neisseria sicca s 8 14
Pseudomonas aeruginosa s 5 9
Gilliamella apicola s 4 8
Gilliamella apicola s 6 11
Gilliamella apicola s 4 7
Gilliamella apicola s 4 7
Gilliamella apicola s 4 7
Gilliamella apicola s 8 14
Gilliamella apicola s 8 14
Gilliamella apicola s 5 9
Nocardia seriolae s 6 10
Nocardia seriolae s 7 12
Bordetella holmesii s 4 7
Streptococcus agalactiae s 4 7
Escherichia coli s 4 7
Ralstonia solanacearum s 4 7
Bacillus cereus s 4 7
Lactobacillus fermentum s 7 12
Escherichia coli s 4 7
Burkholderia pseudomallei s 4 8
Burkholderia pseudomallei s 4 8
Burkholderia pseudomallei s 4 8
Burkholderia pseudomallei s 4 8
Burkholderia mallei s 5 9
Lactobacillus reuteri s 4 7
Lactobacillus reuteri s 4 8
Lactobacillus reuteri s 6 11
Mycobacterium chimaera s 4 8
Escherichia coli s 4 7
Lactobacillus fermentum s 12 20
Actinomyces oris s 4 7
Bacillus thuringiensis s 5 9
Bacillus thuringiensis s 5 9
Klebsiella pneumoniae s 4 7
Klebsiella pneumoniae s 4 7
Burkholderia pseudomallei s 4 7
Escherichia coli O157 s 6 10
Stenotrophomonas maltophilia s 5 9
Pseudomonas aeruginosa s 4 7
Corynebacterium diphtheriae s 4 7
Lactobacillus fermentum s 7 12
Corynebacterium diphtheriae s 4 7
Klebsiella pneumoniae s 4 7
Klebsiella pneumoniae s 4 8
Corynebacterium diphtheriae s 4 8
Paenibacillus larvae subsp. pulvifaciens s 17 27
Paenibacillus larvae subsp. pulvifaciens s 15 24
Lactobacillus reuteri s 4 8
Paenibacillus larvae subsp. pulvifaciens s 14 23
Ralstonia solanacearum s 4 8
Escherichia coli s 4 8
Lactobacillus fermentum s 13 21
Raoultella ornithinolytica s 4 8
Streptococcus iniae s 5 9
Corynebacterium striatum s 9 16
Escherichia coli s 4 7
Escherichia coli s 4 7
Escherichia coli s 4 8
Escherichia coli s 4 7
Bacillus subtilis subsp. subtilis s 5 9
Francisella halioticida s 30 48
Escherichia coli s 7 13
Escherichia coli s 4 8
Enterobacter cloacae subsp. cloacae ATCC 13047 s 22 36
Enterococcus faecium DO s 8 14
Bradyrhizobium diazoefficiens USDA 110 s 7 13
Sinorhizobium meliloti 1021 s 6 10
Yersinia pestis CO92 s 6 10
Burkholderia mallei ATCC 23344 s 57 89
Yersinia enterocolitica subsp. enterocolitica 8081 s 6 11
Escherichia coli str. K-12 substr. MG1655 s 7 12
Escherichia coli O157:H7 str. Sakai s 13 22
Agrobacterium fabrum str. C58 s 4 8
Xanthomonas campestris pv. campestris str. ATCC 33913 s 13 22
Pseudomonas syringae pv. syringae B728a s 8 14
[Pseudomonas syringae] pv. tomato str. DC3000 s 4 8
Lactobacillus paracasei ATCC 334 s 7 12
[Bacillus thuringiensis] serovar konkukian str. 97-27 s 4 8
Shigella dysenteriae Sd197 s 48 75
Escherichia coli IAI39 s 44 69
Flavobacterium psychrophilum JIP02/86 s 4 7
Shigella flexneri 2a str. 301 s 64 99
Escherichia coli UMN026 s 6 10
Klebsiella pneumoniae subsp. pneumoniae HS11286 s 4 8

*p=pathogen;s=symbiont