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Genomes encoding eukaryotic-like proteins

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PF04998 RNA polymerase Rpb1, domain 5

Copy number in non-pathogens:
Mean=0.98 Stddev=0.17

Genomes significantly enriched in this eukaryotic-like domain (ELD; score >= 4):

Genome Class* ELD score Number of proteins containing this domain
Ruminococcus sp. JC304 s 12 3
Klebsiella pneumoniae s 6 2
Klebsiella pneumoniae s 6 2
Staphylococcus aureus subsp. aureus s 6 2
Bifidobacterium longum s 6 2
Neisseria flavescens SK114 s 6 2
Pseudoflavonifractor capillosus ATCC 29799 s 6 2
Escherichia coli TOP2396-3 s 6 2
Salmonella enterica subsp. enterica serovar Hadar s 6 2
Streptococcus sobrinus TCI-98 s 6 2
Streptococcus sobrinus TCI-54 s 6 2
Lachnospiraceae bacterium 7_1_58FAA s 6 2
Lactobacillus paracasei subsp. tolerans Lpl14 s 6 2
Fibrobacter succinogenes subsp. succinogenes S85 s 6 2
Fibrobacter succinogenes subsp. succinogenes S85 s 6 2
Lactobacillus paracasei subsp. paracasei CNCM I-2877 s 6 2
Acinetobacter baumannii 44327_7 s 6 2
Vibrio fortis s 6 2
Butyrivibrio sp. AE2032 s 6 2
Tissierellia bacterium S5-A11 s 6 2
Escherichia coli s 6 2
Salmonella enterica subsp. enterica serovar Kentucky s 6 2
Salmonella enterica subsp. enterica serovar Heidelberg s 6 2
Klebsiella pneumoniae s 6 2
Bacillus cereus s 6 2
Brucella abortus s 6 2
Escherichia coli s 6 2
Escherichia coli s 6 2
[Haemophilus] parasuis p 6 2
Streptococcus mitis s 6 2
Bacillus cereus s 6 2

*p=pathogen;s=symbiont

Release announcements

News

  • EffectiveDB genome mode fixed

    24.11.20
  • EFFECTIVEELD 5.2: EUKARYOTIC-LIKE DOMAIN PREDICTION UPGRADED TO PFAM 31

    20.08.17
  • EffectiveELD 5.1: Eukaryotic-like domain prediction upgraded to Pfam 29

    24.06.16

Latest publications

  • EffectiveDB-updates and novel features for a better annotation of bacterial secreted proteins and Type III, IV, VI secretion systems.
  • Prediction of microbial phenotypes based on comparative genomics.

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