Metamenu

Genomes encoding eukaryotic-like proteins

PF00589 Phage integrase family

Copy number in non-pathogens:
Mean=8.73 Stddev=5.81

Genomes significantly enriched in this eukaryotic-like domain (ELD; score >= 4):

Genome Class* ELD score Number of proteins containing this domain
Paraburkholderia mimosarum LMG 23256 = NBRC 106338 s 5 41
Bacteroides massiliensis B84634 = Timone 84634 = DSM 17679 = JCM 13223 s 4 32
Escherichia coli O26:H11 str. 11368 s 4 33
Mesorhizobium loti MAFF303099 s 4 32
Alistipes senegalensis JC50 s 5 39
Escherichia coli s 4 34
Escherichia coli s 4 34
Escherichia coli s 4 33
Escherichia coli s 4 32
Alistipes shahii WAL 8301 s 6 47
Bacteroides fragilis 638R s 5 38
Bacteroides xylanisolvens SD CC 1b s 4 35
Bacteroides xylanisolvens SD CC 2a s 4 33
Parabacteroides distasonis s 4 33
Bacteroides thetaiotaomicron s 6 45
Parabacteroides distasonis s 4 33
Parabacteroides distasonis s 4 33
Bacteroides thetaiotaomicron s 4 37
Bacteroides vulgatus s 5 38
Bacteroides thetaiotaomicron s 5 41
Flavonifractor plautii s 4 35
Bacteroides vulgatus s 4 33
Bacteroides thetaiotaomicron s 6 48
Parabacteroides distasonis s 6 44
Bacteroides ovatus s 4 33
Bacteroides thetaiotaomicron s 6 45
Parabacteroides distasonis s 6 47
[Eubacterium] rectale s 4 34
Escherichia coli s 4 34
Escherichia coli s 4 32
Escherichia coli s 4 32
Escherichia coli s 4 32
Escherichia coli s 4 32
Escherichia coli s 4 33
Escherichia coli s 4 32
Bacteroides stercoris ATCC 43183 s 4 32
Bacteroides intestinalis DSM 17393 s 4 32
Bacteroides dorei DSM 17855 s 4 37
Tyzzerella nexilis DSM 1787 s 4 34
Bacteroides xylanisolvens SD CC 1b s 4 34
Bacteroides xylanisolvens SD CC 2a s 4 34
Bacteroides ovatus SD CMC 3f s 7 53
Bacteroides finegoldii DSM 17565 s 5 39
Bacteroides sp. 3_1_13 s 5 39
Parabacteroides sp. D26 s 4 36
[Clostridium] clostridioforme WAL-7855 s 4 33
Bacteroides ovatus ATCC 8483 s 4 36
Escherichia coli FRIK920 s 4 35
Escherichia coli EC1865 s 4 33
Enterococcus pallens ATCC BAA-351 s 5 43
Escherichia coli O111:H11 str. CVM9545 s 4 32
Escherichia coli O26:H11 str. CVM9942 s 4 32
Escherichia coli O111:H11 str. CVM9553 s 4 34
Prevotella nigrescens CC14M s 4 35
Lachnospiraceae bacterium A4 s 8 57
Lachnospiraceae bacterium M18-1 s 6 48
Lachnospiraceae bacterium A2 s 4 35
Oscillibacter sp. 1-3 s 6 47
Eubacterium plexicaudatum ASF492 s 7 51
Clostridium sp. ASF502 s 9 64
Escherichia coli O111:H11 str. CFSAN001630 s 4 32
Alistipes finegoldii DSM 17242 s 4 37
Cupriavidus sp. UYPR2.512 s 4 32
Bacteroides fragilis str. 2-F-2 #4 s 5 38
Bacteroides fragilis str. 2-F-2 #7 s 4 35
Bacteroides fragilis str. 1007-1-F #7 s 4 35
Bacteroides fragilis str. 1007-1-F #8 s 4 35
Bacteroides fragilis str. 1007-1-F #9 s 4 36
Bacteroides fragilis str. 1007-1-F #10 s 4 36
Bacteroides fragilis str. 2-F-2 #5 s 4 36
Bacteroides fragilis str. 3783N1-6 s 4 32
Bacteroides fragilis str. 3783N1-8 s 4 32
Bacteroides fragilis str. 3998 T(B) 4 s 5 40
Bacteroides fragilis str. 3976T8 s 5 39
Bacteroides fragilis str. 3988T(B)14 s 4 34
Bacteroides fragilis str. S24L15 s 4 34
Bacteroides fragilis str. S24L26 s 4 35
Bacteroides fragilis str. S24L34 s 4 36
Bacteroides fragilis str. S36L5 s 4 37
Bacteroides fragilis str. S36L11 s 5 38
Bacteroides fragilis str. 1007-1-F #3 s 4 36
Bacteroides fragilis str. 1007-1-F #4 s 4 32
Bacteroides fragilis str. 3725 D9(v) s 5 42
Escherichia coli O118:H16 str. 07-4255 s 4 32
Escherichia coli O26:H11 str. 2011C-3274 s 4 32
Bacteroides fragilis str. 3998T(B)3 s 4 35
Bacteroides fragilis str. S36L12 s 4 37
Escherichia coli FDA517 s 4 32
Escherichia coli TW09098 s 4 32
Escherichia coli FRIK1985 s 4 32
Escherichia coli C40_11 s 4 32
Escherichia coli O157:H7 str. EC4486 s 4 32
Oscillibacter sp. KLE 1745 s 5 39
Oscillibacter sp. KLE 1728 s 5 39
Bacteroides cellulosilyticus WH2 s 4 36
Paraburkholderia mimosarum LMG 23256 = NBRC 106338 s 5 39
Paraburkholderia mimosarum STM 3621 s 5 40
Blautia producta ATCC 27340 = DSM 2950 s 4 33
Parabacteroides gordonii DSM 23371 s 7 53
Burkholderia sp. WSM4176 s 4 34
Bacteroides gallinarum DSM 18171 = JCM 13658 s 4 37
Alistipes onderdonkii WAL 8169 = DSM 19147 s 4 34
Bacteroides massiliensis B84634 = Timone 84634 = DSM 17679 = JCM 13223 s 4 35
Blautia producta ATCC 27340 = DSM 2950 s 4 32
Bacteroides fragilis 3_1_12 s 5 39
Bacteroides sp. 1_1_6 s 8 61
Parabacteroides sp. 2_1_7 s 4 33
Bacteroides sp. 2_2_4 s 8 59
Bacteroides sp. 4_3_47FAA s 4 35
Bacteroides sp. 9_1_42FAA s 5 39
Bacteroides sp. D1 s 4 32
Bacteroides dorei 5_1_36/D4 s 5 39
Bacteroides sp. 2_1_22 s 4 32
Bacteroides sp. 3_1_33FAA s 4 37
Parabacteroides sp. D13 s 6 47
Parabacteroides sp. 20_3 s 7 55
Bacteroides sp. 3_1_23 s 5 40
Bacteroides sp. 3_1_40A s 4 34
Bacteroides sp. 4_1_36 s 5 38
Lachnospiraceae bacterium 7_1_58FAA s 6 46
Bacteroides ovatus 3_8_47FAA s 4 33
Bacteroides sp. 3_1_19 s 4 37
Bacteroides sp. 1_1_30 s 6 45
Bacteroides oleiciplenus YIT 12058 s 4 37
[Clostridium] citroniae WAL-17108 s 4 37
[Clostridium] clostridioforme 2_1_49FAA s 5 43
Hungatella hathewayi WAL-18680 s 6 45
Dorea formicigenerans 4_6_53AFAA s 4 36
Bacteroides caccae CL03T12C61 s 7 52
Bacteroides cellulosilyticus CL02T12C19 s 5 41
Bacteroides dorei CL02T00C15 s 7 53
Bacteroides dorei CL02T12C06 s 7 54
Bacteroides dorei CL03T12C01 s 5 40
Bacteroides fragilis CL05T12C13 s 4 36
Bacteroides fragilis CL07T00C01 s 4 35
Bacteroides fragilis CL07T12C05 s 4 35
Bacteroides ovatus CL02T12C04 s 9 65
Bacteroides ovatus CL03T12C18 s 4 35
Bacteroides salyersiae CL02T12C01 s 4 33
Bacteroides uniformis CL03T00C23 s 4 32
Bacteroides xylanisolvens CL03T12C04 s 5 38
Parabacteroides distasonis CL03T12C09 s 5 40
Parabacteroides distasonis CL09T03C24 s 5 42
Parabacteroides merdae CL03T12C32 s 4 33
Bacteroides fragilis HMW 610 s 4 36
Bacteroides fragilis HMW 615 s 4 35
Bacteroides fragilis HMW 616 s 4 35
Bacteroides faecis MAJ27 s 4 33
Parabacteroides sp. D25 s 4 32
[Clostridium] bolteae 90B8 s 4 36
[Clostridium] bolteae 90A9 s 4 35
[Clostridium] bolteae 90B3 s 4 34
[Clostridium] clostridioforme 90A6 s 6 44
[Clostridium] clostridioforme 90A4 s 6 46
[Clostridium] clostridioforme 90B1 s 4 37
[Clostridium] clostridioforme 90A1 s 5 41
[Clostridium] clostridioforme 90A3 s 5 43
[Clostridium] clostridioforme 90A8 s 8 59
[Clostridium] clostridioforme CM201 s 5 43
Bacteroides massiliensis B84634 = Timone 84634 = DSM 17679 = JCM 13223 s 4 35
Enterococcus pallens ATCC BAA-351 s 6 45
Paraburkholderia phymatum STM815 s 4 35
Parabacteroides distasonis ATCC 8503 s 4 32
Escherichia coli s 4 32
Escherichia coli s 4 34
Bacteroides fragilis s 5 40
Bacteroides fragilis s 4 33
Bacteroides fragilis s 4 36
Bacteroides fragilis s 5 40
Bacteroides thetaiotaomicron s 5 40
Escherichia coli s 4 32
Bacteroides fragilis s 4 34
Bacteroides fragilis s 4 34
Bacillus cereus s 4 33
Escherichia coli s 4 35
Escherichia coli s 4 32
Bacillus cereus s 4 35
Bacillus cereus s 4 37
Escherichia coli s 4 34
Escherichia coli s 4 34
Escherichia coli s 4 33
Escherichia coli s 4 32
Escherichia coli s 4 34
Parabacteroides sp. HGS0025 s 4 35
Parabacteroides gordonii MS-1 s 7 53
Burkholderia vietnamiensis s 4 35
Escherichia coli s 4 33
Bacteroides ovatus s 5 41
Escherichia coli s 4 32
Klebsiella oxytoca s 4 35
Klebsiella michiganensis s 4 32
Bacteroides dorei CL03T12C01 s 4 37
Bacteroides ovatus s 4 35
Bacteroides thetaiotaomicron s 6 45
Bacteroides caecimuris s 6 44
Bacteroides fragilis s 4 34
Bacteroides ovatus s 5 40
Escherichia coli s 4 33
Escherichia coli s 4 34
Escherichia coli s 4 35
Escherichia coli s 4 33
Escherichia coli s 4 32
Escherichia coli s 4 32
Escherichia coli s 4 33
Escherichia coli s 4 32
Escherichia coli s 4 35
Escherichia coli s 4 32
Escherichia coli s 4 32
Escherichia coli s 4 35
Escherichia coli s 4 32
Bacteroides fragilis s 4 33
Escherichia coli s 4 36
Mycobacterium gordonae s 4 32
Escherichia coli s 4 32
Escherichia coli s 4 32
Escherichia coli s 4 32
Escherichia coli s 4 32
Bacteroides vulgatus s 4 37
Bacteroides xylanisolvens s 5 41
Escherichia coli O157:H7 s 4 32
Escherichia coli O157:H7 s 4 32
Parabacteroides sp. YL27 s 4 33
Bacteroides caecimuris s 6 44
Lachnoclostridium sp. YL32 s 8 58
Ruminiclostridium sp. KB18 s 4 36
Xenorhabdus hominickii s 4 32
Bacteroides xylanisolvens s 4 37
[Clostridium] clostridioforme s 4 35
[Clostridium] clostridioforme s 4 35
Escherichia coli s 4 32
Escherichia coli s 4 32
Tannerella sp. oral taxon HOT-286 s 5 39
Bacteroides ovatus s 4 36
Bacteroides faecis MAJ27 s 4 33
Escherichia coli s 4 32
[Clostridium] clostridioforme s 4 33
Bacteroides fragilis s 4 32
Bacteroides thetaiotaomicron s 7 55
Escherichia coli s 4 32
Escherichia coli s 5 39
Bacillus thuringiensis s 4 36
Escherichia coli s 4 34
Escherichia coli s 4 32
Escherichia coli s 4 32
Escherichia coli s 4 34
Bacteroides xylanisolvens s 4 35
Bacteroides dorei s 6 46
Bacteroides ovatus s 6 44
Parabacteroides distasonis s 4 36
Bacillus mycoides s 4 34
Bacteroides thetaiotaomicron VPI-5482 s 7 50

*p=pathogen;s=symbiont