Effective results for Beutenbergia cavernae DSM 12333 (eggnog40)
Summary
Number of putative secreted proteins: 240
- Predicted by T4SEpre: 0
- Predicted by EffectiveELD: 26 eukaryotic-like domains, contained in 240 proteins (2 high, 238 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): None
Protein based results
Putative secreted proteins (weak evidence indicated by parentheses)
| Protein | EffectiveT3 | EffectiveCCBD | T4SEpre | EffectiveELD | Predotar |
|---|---|---|---|---|---|
| 471853.Bcav_1577 | (PF01408) (PF02894) | (mitochondrial) | |||
| 471853.Bcav_0174 | (PF08124) (PF02884) | ER | |||
| 471853.Bcav_4062 | (PF08124) (PF02884) | (ER) | |||
| 471853.Bcav_1146 | (PF01408) (PF02894) | (ER); (mitochondrial) | |||
| 471853.Bcav_3364 | (PF01408) (PF02894) | (ER) | |||
| 471853.Bcav_0600 | (PF01408) (PF02894) | mitochondrial | |||
| 471853.Bcav_4060 | (PF01408) | ER; (mitochondrial) | |||
| 471853.Bcav_2704 | (PF13810) | (ER) | |||
| 471853.Bcav_2703 | (PF13416) | ER; (ER) | |||
| 471853.Bcav_3388 | (PF13416) | (mitochondrial) | |||
| 471853.Bcav_3941 | (PF13416) | ER; (ER) | |||
| 471853.Bcav_0627 | (PF11721) | ER | |||
| 471853.Bcav_3712 | (PF13416) | ER | |||
| 471853.Bcav_0434 | (PF13416) | ER | |||
| 471853.Bcav_0557 | (PF01408) | ER; (mitochondrial) | |||
| 471853.Bcav_0894 | (PF13416) | (mitochondrial) | |||
| 471853.Bcav_0892 | (PF13377) | (mitochondrial); (plastid) | |||
| 471853.Bcav_1707 | (PF13810) | mitochondrial; (mitochondrial) | |||
| 471853.Bcav_0178 | (PF13416) | mitochondrial | |||
| 471853.Bcav_2551 | (PF13416) | ER | |||
| 471853.Bcav_3608 | (PF13377) | (mitochondrial) | |||
| 471853.Bcav_0188 | (PF01408) | ER | |||
| 471853.Bcav_1296 | (PF13416) | ER; (ER) | |||
| 471853.Bcav_1295 | (PF13377) | mitochondrial | |||
| 471853.Bcav_1294 | (PF16655) | (mitochondrial) | |||
| 471853.Bcav_2837 | (PF13416) | ER; (ER) | |||
| 471853.Bcav_3986 | (PF16655) | mitochondrial | |||
| 471853.Bcav_3988 | (PF13416) | mitochondrial | |||
| 471853.Bcav_1485 | (PF13416) | ER | |||
| 471853.Bcav_2846 | (PF13416) | ER | |||
| 471853.Bcav_3794 | (PF01408) | ER | |||
| 471853.Bcav_3793 | (PF13416) | (ER) | |||
| 471853.Bcav_0014 | (PF13377) | (ER) | |||
| 471853.Bcav_0306 | (PF13416) | (ER) | |||
| 471853.Bcav_1781 | (PF13416) | ER | |||
| 471853.Bcav_1658 | (PF01408) (PF02894) | (mitochondrial) | |||
| 471853.Bcav_2274 | (PF13416) | ER | |||
| 471853.Bcav_2275 | (PF13377) | (mitochondrial) | |||
| 471853.Bcav_2896 | (PF16655) | (mitochondrial) | |||
| 471853.Bcav_0793 | (PF13416) | (mitochondrial) | |||
| 471853.Bcav_1468 | (PF13416) | mitochondrial | |||
| 471853.Bcav_1467 | (PF01408) | ER | |||
| 471853.Bcav_1680 | (PF13416) | mitochondrial | |||
| 471853.Bcav_2867 | (PF13377) | (mitochondrial); plastid | |||
| 471853.Bcav_3077 | (PF13416) | ER | |||
| 471853.Bcav_1698 | (PF13416) | (mitochondrial) | |||
| 471853.Bcav_0641 | (PF11070) | ER | |||
| 471853.Bcav_1502 | (PF16655) | mitochondrial; (mitochondrial) | |||
| 471853.Bcav_1501 | (PF12708) | (mitochondrial) | |||
| 471853.Bcav_0800 | (PF13377) | (mitochondrial) | |||
| 471853.Bcav_0803 | (PF01408) (PF02894) | (mitochondrial) | |||
| 471853.Bcav_0806 | (PF13416) | (mitochondrial) | |||
| 471853.Bcav_0808 | (PF01408) | (ER) | |||
| 471853.Bcav_1534 | (PF13416) | (ER); ER | |||
| 471853.Bcav_1530 | (PF13653) | ER | |||
| 471853.Bcav_3572 | (PF13416) | ER | |||
| 471853.Bcav_0271 | (PF01872) | (ER) | |||
| 471853.Bcav_0276 | (PF13416) | ER | |||
| 471853.Bcav_1183 | (PF01408) | mitochondrial; (mitochondrial) | |||
| 471853.Bcav_1454 | (PF13416) | ER; (mitochondrial) | |||
| 471853.Bcav_1522 | (PF13416) | ER | |||
| 471853.Bcav_1527 | (PF13416) | (mitochondrial); mitochondrial | |||
| 471853.Bcav_3365 | (PF01408) | mitochondrial; (mitochondrial) | |||
| 471853.Bcav_3360 | (PF13377) | (mitochondrial) | |||
| 471853.Bcav_1955 | (PF13416) | ER | |||
| 471853.Bcav_1956 | (PF13377) | (mitochondrial); (plastid) | |||
| 471853.Bcav_2977 | (PF13416) | ER | |||
| 471853.Bcav_1543 | (PF13416) | (ER) | |||
| 471853.Bcav_0055 | (PF13377) | (mitochondrial) | |||
| 471853.Bcav_1706 | (PF11175) | (mitochondrial) | |||
| 471853.Bcav_1354 | (PF01408) (PF02894) | ||||
| 471853.Bcav_3181 | (PF13377) | (plastid) | |||
| 471853.Bcav_0192 | (PF13416) | (ER) | |||
| 471853.Bcav_4185 | (PF01408) (PF02894) | ||||
| 471853.Bcav_3315 | (PF01408) (PF02894) | ||||
| 471853.Bcav_0036 | (PF13377) | (ER) | |||
| 471853.Bcav_1322 | (PF13377) | (plastid) | |||
| 471853.Bcav_3275 | (PF13377) | (plastid) | |||
| 471853.Bcav_3075 | (PF13377) | (plastid) | |||
| 471853.Bcav_2078 | (PF01636) | plastid | |||
| 471853.Bcav_4191 | (PF01408) (PF02894) | ||||
| 471853.Bcav_3896 | (PF13377) | (mitochondrial) | |||
| 471853.Bcav_1317 | (PF13377) | (plastid) | |||
| 471853.Bcav_1866 | (PF12708) | (mitochondrial) | |||
| 471853.Bcav_0302 | (PF01408) (PF02894) | ||||
| 471853.Bcav_0309 | (PF13377) | plastid | |||
| 471853.Bcav_1659 | (PF01408) (PF02894) | ||||
| 471853.Bcav_0790 | (PF01408) (PF02894) | ||||
| 471853.Bcav_1660 | (PF01408) (PF02894) | ||||
| 471853.Bcav_2262 | (PF13377) | (plastid) | |||
| 471853.Bcav_2649 | (PF14721) | (ER) | |||
| 471853.Bcav_1474 | (PF13377) | (plastid) | |||
| 471853.Bcav_1508 | (PF13416) | (ER) | |||
| 471853.Bcav_0805 | (PF01408) (PF02894) | ||||
| 471853.Bcav_3349 | (PF01408) (PF02894) | ||||
| 471853.Bcav_3348 | (PF01408) (PF02894) | ||||
| 471853.Bcav_1228 | (PF01636) | (ER) | |||
| 471853.Bcav_3571 | (PF13377) | (plastid) | |||
| 471853.Bcav_0594 | (PF01408) (PF02894) | ||||
| 471853.Bcav_0593 | (PF13377) | (plastid) | |||
| 471853.Bcav_0731 | (PF01408) (PF02894) | ||||
| 471853.Bcav_2604 | (PF13377) | (mitochondrial) | |||
| 471853.Bcav_3772 | (PF01408) (PF02894) | ||||
| 471853.Bcav_3000 | (PF13416) | (mitochondrial) | |||
| 471853.Bcav_2569 | (PF01230) | ||||
| 471853.Bcav_3761 | (PF01872) | ||||
| 471853.Bcav_3763 | (PF03795) | ||||
| 471853.Bcav_1948 | (PF01636) | ||||
| 471853.Bcav_3169 | (PF01636) | ||||
| 471853.Bcav_3384 | (PF13377) | ||||
| 471853.Bcav_0446 | (PF01872) | ||||
| 471853.Bcav_0056 | (PF13377) | ||||
| 471853.Bcav_3710 | (PF01636) | ||||
| 471853.Bcav_1970 | (PF01230) | ||||
| 471853.Bcav_1578 | (PF13377) | ||||
| 471853.Bcav_2954 | (PF01636) | ||||
| 471853.Bcav_3531 | (PF01636) | ||||
| 471853.Bcav_0943 | (PF16875) | ||||
| 471853.Bcav_3444 | (PF12708) | ||||
| 471853.Bcav_3446 | (PF12831) | ||||
| 471853.Bcav_0432 | (PF12708) | ||||
| 471853.Bcav_3841 | (PF01872) | ||||
| 471853.Bcav_0556 | (PF13416) | ||||
| 471853.Bcav_0541 | (PF01872) | ||||
| 471853.Bcav_0383 | (PF03795) | ||||
| 471853.Bcav_0098 | PF07460 | ||||
| 471853.Bcav_1702 | (PF03795) | ||||
| 471853.Bcav_2819 | (PF13416) | ||||
| 471853.Bcav_2816 | (PF16875) | ||||
| 471853.Bcav_2722 | (PF12831) | ||||
| 471853.Bcav_2723 | (PF13377) | ||||
| 471853.Bcav_2720 | (PF13377) | ||||
| 471853.Bcav_2721 | (PF01636) | ||||
| 471853.Bcav_0957 | (PF11721) | ||||
| 471853.Bcav_3452 | (PF13377) | ||||
| 471853.Bcav_3455 | (PF03795) | ||||
| 471853.Bcav_0558 | (PF13377) | ||||
| 471853.Bcav_1357 | (PF01636) | ||||
| 471853.Bcav_2027 | (PF01872) | ||||
| 471853.Bcav_4090 | (PF13603) | ||||
| 471853.Bcav_4097 | (PF01636) | ||||
| 471853.Bcav_4076 | (PF03795) | ||||
| 471853.Bcav_1299 | (PF12831) | ||||
| 471853.Bcav_1769 | (PF01872) | ||||
| 471853.Bcav_2122 | (PF16655) | ||||
| 471853.Bcav_3618 | (PF12708) | ||||
| 471853.Bcav_2836 | (PF12831) | ||||
| 471853.Bcav_2900 | (PF01636) | ||||
| 471853.Bcav_4084 | (PF03795) | ||||
| 471853.Bcav_4061 | (PF13377) | ||||
| 471853.Bcav_0193 | (PF13377) | ||||
| 471853.Bcav_0194 | (PF12831) | ||||
| 471853.Bcav_1801 | (PF01636) | ||||
| 471853.Bcav_3262 | PF08213 | not used | |||
| 471853.Bcav_3083 | (PF01230) | ||||
| 471853.Bcav_3085 | (PF01636) | ||||
| 471853.Bcav_3887 | (PF01636) | ||||
| 471853.Bcav_3313 | (PF13377) | ||||
| 471853.Bcav_3319 | (PF13377) | ||||
| 471853.Bcav_0327 | (PF01636) | ||||
| 471853.Bcav_4056 | (PF05448) | ||||
| 471853.Bcav_1104 | (PF01636) | ||||
| 471853.Bcav_1631 | (PF13810) | ||||
| 471853.Bcav_3675 | (PF13416) | ||||
| 471853.Bcav_3674 | (PF12831) | ||||
| 471853.Bcav_1818 | (PF01872) | ||||
| 471853.Bcav_1817 | (PF01872) | ||||
| 471853.Bcav_2210 | (PF03795) | ||||
| 471853.Bcav_3899 | (PF13416) | ||||
| 471853.Bcav_0207 | (PF01872) | ||||
| 471853.Bcav_0204 | (PF01872) | ||||
| 471853.Bcav_4040 | (PF13416) | ||||
| 471853.Bcav_1488 | (PF01636) | ||||
| 471853.Bcav_1865 | (PF12708) | ||||
| 471853.Bcav_1867 | (PF12831) | ||||
| 471853.Bcav_2844 | (PF13377) | ||||
| 471853.Bcav_2841 | (PF13377) | ||||
| 471853.Bcav_2069 | (PF01230) | ||||
| 471853.Bcav_0015 | (PF13416) | ||||
| 471853.Bcav_0010 | (PF03795) | ||||
| 471853.Bcav_0658 | (PF01408) | ||||
| 471853.Bcav_2090 | (PF03795) | ||||
| 471853.Bcav_1780 | (PF13377) | ||||
| 471853.Bcav_1499 | (PF01230) | ||||
| 471853.Bcav_2877 | (PF13377) | ||||
| 471853.Bcav_0825 | (PF13377) | ||||
| 471853.Bcav_0794 | (PF13377) | ||||
| 471853.Bcav_0317 | (PF12831) | ||||
| 471853.Bcav_1066 | (PF01636) | ||||
| 471853.Bcav_2267 | (PF01408) | ||||
| 471853.Bcav_3922 | (PF01408) | ||||
| 471853.Bcav_2089 | (PF03795) | ||||
| 471853.Bcav_2088 | (PF01872) | ||||
| 471853.Bcav_2883 | (PF01872) | ||||
| 471853.Bcav_3356 | (PF13377) | ||||
| 471853.Bcav_0079 | (PF01636) | ||||
| 471853.Bcav_0074 | (PF03795) | ||||
| 471853.Bcav_0073 | (PF01872) | ||||
| 471853.Bcav_0105 | (PF01636) | ||||
| 471853.Bcav_1673 | (PF12899) | ||||
| 471853.Bcav_1697 | (PF11175) | ||||
| 471853.Bcav_1696 | (PF13377) | ||||
| 471853.Bcav_2256 | (PF03795) | ||||
| 471853.Bcav_3696 | (PF01636) | ||||
| 471853.Bcav_1535 | (PF13377) | ||||
| 471853.Bcav_1531 | (PF12831) | ||||
| 471853.Bcav_3979 | (PF13377) | ||||
| 471853.Bcav_0585 | (PF01872) | ||||
| 471853.Bcav_0476 | (PF01408) | ||||
| 471853.Bcav_3800 | (PF13810) | ||||
| 471853.Bcav_3806 | (PF01636) | ||||
| 471853.Bcav_0121 | (PF01408) | ||||
| 471853.Bcav_0058 | (PF13416) | ||||
| 471853.Bcav_1058 | (PF05448) | ||||
| 471853.Bcav_1980 | (PF01230) | ||||
| 471853.Bcav_2180 | (PF03795) | ||||
| 471853.Bcav_1520 | (PF13377) | ||||
| 471853.Bcav_3363 | (PF01408) | ||||
| 471853.Bcav_0599 | (PF05448) | ||||
| 471853.Bcav_0918 | (PF13377) | ||||
| 471853.Bcav_0913 | (PF13377) | ||||
| 471853.Bcav_0280 | (PF13377) | ||||
| 471853.Bcav_4113 | (PF14494) | ||||
| 471853.Bcav_4112 | (PF03795) | ||||
| 471853.Bcav_0130 | (PF16875) | ||||
| 471853.Bcav_1730 | (PF13603) | ||||
| 471853.Bcav_1734 | (PF01872) | ||||
| 471853.Bcav_1952 | (PF03795) | ||||
| 471853.Bcav_1553 | (PF03795) | ||||
| 471853.Bcav_2603 | (PF13416) | ||||
| 471853.Bcav_2608 | (PF01636) | ||||
| 471853.Bcav_2772 | (PF01636) | ||||
| 471853.Bcav_3399 | (PF13377) | ||||
| 471853.Bcav_3396 | (PF01408) | ||||
| 471853.Bcav_2648 | (PF01636) | ||||
| 471853.Bcav_3956 | (PF01636) | ||||
| 471853.Bcav_4124 | (PF01872) | ||||
| 471853.Bcav_4128 | (PF03795) | ||||
| 471853.Bcav_1437 | (PF13416) | ||||
| 471853.Bcav_1433 | (PF13810) |
Detailed merged results for each protein sequence
- Detailed merged results as table (merge_results.html)
- Detailed merged results as tab delimited file (merge_results.csv)
Individual results for each protein sequence
- EffectiveELD predictions (PROTEINS.ELD.TXT)
- Predotar predictions using animal/human model (Predotar_output_modelANIMAL.TXT)
- Predotar predictions using plant model (Predotar_output_modelPLANT.TXT)
Genome based results
Summary
- Gram negative: NO (FDR = 0.5 %)
- Functional Type III secretion system: N.D.
- Functional Type IV secretion system: NO (FDR = 7.2 %)
- Functional Type VI secretion system: N.D.
Individual results for each secretion system
Parameters:
==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================
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