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Genomes encoding eukaryotic-like proteins

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PF12899 Alkaline and neutral invertase

Copy number in non-pathogens:
Mean=0.05 Stddev=0.23

Genomes significantly enriched in this eukaryotic-like domain (ELD; score >= 4):

Genome Class* ELD score Number of proteins containing this domain
Verrucomicrobium sp. BvORR034 s 4 1
Verrucomicrobium sp. BvORR106 s 4 1
Candidatus Synechococcus spongiarum s 4 1
Acidovorax avenae subsp. avenae ATCC 19860 s 4 1
Variovorax sp. CF313 s 4 1
Rivularia sp. PCC 7116 s 4 1
Leptolyngbya boryana PCC 6306 s 8 2
Calothrix sp. PCC 7103 s 17 4
Calothrix sp. PCC 6303 s 4 1
Pleurocapsa sp. PCC 7319 s 4 1
Segniliparus rugosus ATCC BAA-974 s 4 1
Acidovorax avenae subsp. avenae RS-1 s 4 1
Acidovorax citrulli AAC00-1 s 4 1
Nostoc punctiforme PCC 73102 s 8 2
'Nostoc azollae' 0708 s 4 1
Segniliparus rotundus DSM 44985 s 4 1
Thermobifida fusca YX s 4 1
Acaryochloris marina MBIC11017 s 4 1
Candidatus Synechococcus spongiarum SH4 s 4 1
Myxosarcina sp. GI1 s 8 2
Acidovorax avenae s 4 1
Xylophilus ampelinus s 4 1
Polaribacter vadi s 4 1
Polaribacter reichenbachii s 4 1
Opitutaceae bacterium TSB47 s 4 1
Nostoc sp. KVJ20 s 8 2
Flavobacterium chilense s 4 1
Acidovorax sp. RAC01 s 4 1
Hydrogenophaga sp. RAC07 s 4 1
Chryseobacterium chaponense s 4 1
Chryseobacterium piscicola s 4 1
Flavobacterium chilense s 4 1
Polaribacter vadi s 4 1
Sphingobacterium sp. B29 s 4 1
Polaribacter reichenbachii s 4 1

*p=pathogen;s=symbiont

Release announcements

News

  • EffectiveDB genome mode fixed

    24.11.20
  • EFFECTIVEELD 5.2: EUKARYOTIC-LIKE DOMAIN PREDICTION UPGRADED TO PFAM 31

    20.08.17
  • EffectiveELD 5.1: Eukaryotic-like domain prediction upgraded to Pfam 29

    24.06.16

Latest publications

  • EffectiveDB-updates and novel features for a better annotation of bacterial secreted proteins and Type III, IV, VI secretion systems.
  • Prediction of microbial phenotypes based on comparative genomics.

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