Genomes encoding eukaryotic-like proteins
PF01872 RibD C-terminal domain
Copy number in non-pathogens:
Mean=2.88 Stddev=3.36
Genomes significantly enriched in this eukaryotic-like domain (ELD; score >= 4):
| Genome | Class* | ELD score | Number of proteins containing this domain |
|---|---|---|---|
| Nocardia africana NBRC 100379 | s | 4 | 17 |
| Nocardia anaemiae NBRC 100462 | s | 5 | 20 |
| Nocardia yamanashiensis NBRC 100130 | s | 4 | 19 |
| Nocardia elegans NBRC 108235 | s | 5 | 20 |
| Nocardia inohanensis NBRC 100128 | s | 4 | 17 |
| Nocardia kruczakiae NBRC 101016 | s | 4 | 18 |
| Nocardia mikamii NBRC 108933 | s | 5 | 21 |
| Nocardia puris NBRC 108233 | s | 4 | 18 |
| Nocardia testacea NBRC 100365 | s | 4 | 18 |
| Nocardia aobensis NBRC 100429 | s | 5 | 21 |
| Nocardia concava NBRC 100430 | s | 5 | 22 |
| Nocardia tenerifensis NBRC 101015 | s | 5 | 22 |
| Nocardia transvalensis NBRC 15921 | s | 5 | 22 |
| Amycolatopsis orientalis DSM 46075 | s | 5 | 20 |
| Amycolatopsis benzoatilytica AK 16/65 | s | 4 | 18 |
| Actinopolymorpha alba DSM 45243 | s | 8 | 30 |
| Streptomyces sp. HGB0020 | s | 4 | 18 |
| Actinomadura madurae LIID-AJ290 | s | 7 | 28 |
| Herbidospora cretacea | s | 4 | 17 |
| Actinoplanes subtropicus | s | 4 | 17 |
| Pseudonocardia acaciae DSM 45401 | s | 5 | 22 |
| Asanoa hainanensis | s | 5 | 21 |
| Amycolatopsis kentuckyensis | s | 5 | 20 |
| Amycolatopsis lexingtonensis | s | 5 | 21 |
| Amycolatopsis pretoriensis | s | 5 | 22 |
*p=pathogen;s=symbiont
Release announcements
News
Latest publications
Contact
- +43 1 4277 76681
- +43 1 4277 876681
- contact.cube@univie.ac.at
