Metamenu

Genomes encoding eukaryotic-like proteins

PF12708 Pectate lyase superfamily protein

Copy number in non-pathogens:
Mean=0.45 Stddev=0.98

Genomes significantly enriched in this eukaryotic-like domain (ELD; score >= 4):

Genome Class* ELD score Number of proteins containing this domain
Paenibacillus senegalensis JC66 s 4 5
Streptomyces sp. AW19M42 s 6 7
Bacteroides thetaiotaomicron s 4 5
Bacteroides vulgatus s 4 5
Bacteroides ovatus s 6 7
Bacteroides intestinalis DSM 17393 s 5 6
Bacteroides dorei DSM 17855 s 5 6
Paenibacillus sp. JDR-2 s 5 6
Chthoniobacter flavus Ellin428 s 7 8
Sphingobacterium spiritivorum ATCC 33861 s 4 5
Bacteroides ovatus SD CMC 3f s 6 7
Bacteroides cellulosilyticus DSM 14838 s 6 7
Bacteroides sp. 3_1_13 s 6 7
Bacteroides ovatus ATCC 8483 s 7 8
Didymococcus colitermitum TAV2 s 7 8
Geitlerinema sp. PCC 7105 s 4 5
Opitutaceae bacterium TAV1 s 7 8
Stigmatella aurantiaca DW4/3-1 s 4 5
Bacteroides cellulosilyticus WH2 s 7 8
Paenibacillus pinihumi DSM 23905 = JCM 16419 s 5 6
Echinicola pacifica DSM 19836 s 5 6
Bacteroides sp. 2_2_4 s 6 7
Bacteroides sp. 4_3_47FAA s 4 5
Bacteroides sp. 9_1_42FAA s 4 5
Bacteroides sp. D2 s 4 5
Bacteroides dorei 5_1_36/D4 s 4 5
Bacteroides sp. 3_1_33FAA s 4 5
Bacteroides sp. 3_1_23 s 5 6
Bacteroides sp. 3_1_40A s 4 5
Bacteroides ovatus 3_8_47FAA s 5 6
Bacteroides oleiciplenus YIT 12058 s 4 5
Sphingobium yanoikuyae ATCC 51230 s 4 5
Bacteroides cellulosilyticus CL02T12C19 s 6 7
Bacteroides dorei CL02T00C15 s 4 5
Bacteroides dorei CL02T12C06 s 4 5
Bacteroides dorei CL03T12C01 s 4 5
Bacteroides ovatus CL02T12C04 s 5 6
Bacteroides ovatus CL03T12C18 s 6 7
Bacillus subtilis S1-4 s 6 7
Bacillus amyloliquefaciens Y2 s 4 5
Stigmatella aurantiaca DW4/3-1 s 4 5
Bacillus subtilis subsp. subtilis s 4 5
Bacillus velezensis s 4 5
Saccharibacillus sacchari DSM 19268 s 4 5
Bacillus subtilis s 5 6
Rothia mucilaginosa s 4 5
Bacillus amyloliquefaciens s 4 5
Bacteroides ovatus s 4 5
Bacteroides dorei CL03T12C01 s 4 5
Bacteroides ovatus s 7 8
Bacteroides ovatus s 6 7
Sphingomonas panacis s 5 6
Opitutaceae bacterium TSB47 s 12 13
Bacteroides xylanisolvens s 5 6
Bacillus velezensis s 4 5
Bacillus amyloliquefaciens s 4 5
Bacteroides ovatus s 5 6
Bacteroides ovatus s 4 5
Bacteroides xylanisolvens s 5 6
Bacteroides ovatus s 7 8
Sphingobacterium sp. B29 s 4 5
Bacteroides dorei s 4 5
Bacteroides ovatus s 6 7
Bacteroides dorei s 5 6
Bacillus amyloliquefaciens s 6 7

*p=pathogen;s=symbiont