Metamenu

Effective results for Rhodopirellula baltica SH 1 (eggnog40)

Summary

Number of putative secreted proteins: 475
- Predicted by T4SEpre: 0
- Predicted by EffectiveELD: 75 eukaryotic-like domains, contained in 475 proteins (210 high, 265 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): Type VI

Protein based results

Putative secreted proteins (weak evidence indicated by parentheses)

ProteinEffectiveT3EffectiveCCBDT4SEpreEffectiveELDPredotar
243090.RB1661PF00028 (PF14252) (PF13385) PF00354 (PF04862) (PF00059)plastid
243090.RB154(PF14252) PF00058 PF00028mitochondrial
243090.RB110PF00884 PF16347ER
243090.RB9498PF00884 PF14707ER
243090.RB6599PF00884 PF16347(mitochondrial); (plastid)
243090.RB7875PF00884 PF14707ER
243090.RB3382(PF13517) PF07593ER
243090.RB695PF00884 PF06439ER
243090.RB10416(PF03160) (PF13385)(mitochondrial); (plastid)
243090.RB10999(PF13385) (PF13088)ER
243090.RB7368(PF13180) (PF13365)(mitochondrial); (plastid)
243090.RB4638PF00884 PF16347ER
243090.RB9073(PF13517) PF07593ER
243090.RB7367(PF13180) (PF13365)(ER)
243090.RB6765PF00884 PF16347ER
243090.RB3755PF00884 PF16347ER
243090.RB772PF00884 PF14707ER
243090.RB2254PF00884 PF16347mitochondrial; (mitochondrial)
243090.RB10716(PF13570) PF13360mitochondrial
243090.RB11690(PF07517) (PF01043)ER
243090.RB107(PF13570) PF13360(ER)
243090.RB5378PF00884 PF16347ER
243090.RB1854(PF06283) PF06439mitochondrial; (mitochondrial)
243090.RB2066(PF13180) (PF13365)(mitochondrial)
243090.RB6196PF00884 PF16347ER
243090.RB7371(PF13180) (PF13365)ER
243090.RB6781PF00884 PF16347ER
243090.RB9066(PF13517) PF07593ER; (ER)
243090.RB973PF00884 PF16347(mitochondrial)
243090.RB200PF00884 PF16347ER
243090.RB5295PF00884 PF16347ER
243090.RB8078PF00884 PF14707ER
243090.RB5645(PF13180) (PF13365)mitochondrial
243090.RB3877PF00884 PF14707ER
243090.RB7769PF00884(mitochondrial)
243090.RB13147PF00884 PF14707(mitochondrial)
243090.RB4815PF00884ER
243090.RB5146PF00884mitochondrial
243090.RB5365(PF01408)(mitochondrial); mitochondrial
243090.RB3403PF00884ER
243090.RB11607PF03983ER
243090.RB8501(PF13088)ER
243090.RB11660PF13360ER
243090.RB1109PF06439ER
243090.RB6866PF03983(mitochondrial)
243090.RB8423PF00884(mitochondrial)
243090.RB5920(PF12894)mitochondrial; (mitochondrial)
243090.RB7879PF00884ER
243090.RB6807(PF03629)(ER); ER
243090.RB11255(PF01148)ER
243090.RB4606(PF13899)(mitochondrial); plastid
243090.RB5383PF00884ER
243090.RB8597PF00884(mitochondrial)
243090.RB9439PF06439mitochondrial
243090.RB9382(PF13180) (PF13365)(plastid)
243090.RB9945(PF06283)ER
243090.RB3956PF00884ER
243090.RB9146(PF13204)ER
243090.RB12068(PF13570) PF13360plastid
243090.RB9884(PF13385)ER
243090.RB1205PF00884ER
243090.RB9196PF06439mitochondrial; (mitochondrial)
243090.RB12598(PF01148)ER
243090.RB6985(PF01408)(mitochondrial)
243090.RB5208(PF09825)(mitochondrial)
243090.RB8240(PF13180)(ER)
243090.RB8639PF13360ER; (ER)
243090.RB12303(PF11721) PF13360(ER)
243090.RB6120(PF13180)mitochondrial
243090.RB6127(PF13768)(mitochondrial)
243090.RB7560PF00884(mitochondrial); mitochondrial
243090.RB617PF03983ER
243090.RB12556(PF12006)ER; (ER)
243090.RB3534(PF13517) PF07593(ER)
243090.RB7541PF13360ER
243090.RB5025(PF00112)ER
243090.RB7152PF06439(mitochondrial)
243090.RB11879(PF13180) (PF13365)plastid
243090.RB6207PF13360ER
243090.RB11876(PF13899)mitochondrial
243090.RB10583(PF13517) PF07593(mitochondrial)
243090.RB638PF13360ER
243090.RB3514PF07632ER
243090.RB3513PF07632ER
243090.RB7521(PF01841)mitochondrial
243090.RB5007(PF03629)ER; (ER)
243090.RB574(PF01841)ER
243090.RB12325PF00884ER
243090.RB10124PF13360mitochondrial; (mitochondrial)
243090.RB9849PF06439(mitochondrial); (plastid)
243090.RB5616(PF05448)ER
243090.RB962PF13495(mitochondrial)
243090.RB2487(PF05050)(mitochondrial)
243090.RB724PF00884ER
243090.RB7502(PF13519)ER
243090.RB5288PF06439mitochondrial; (mitochondrial)
243090.RB774PF06439(ER)
243090.RB773PF00884mitochondrial
243090.RB5429(PF10142)ER
243090.RB12305(PF11721)ER
243090.RB2367PF00884ER
243090.RB12538PF03983ER
243090.RB983PF13360ER
243090.RB7388PF13495(mitochondrial)
243090.RB6658(PF06283)ER
243090.RB9549PF00884ER
243090.RB7240(PF13517) PF07593(plastid)
243090.RB11123PF00884ER
243090.RB9376PF00028mitochondrial
243090.RB2440(PF00139) (PF14252) (PF03160)
243090.RB4293(PF03098)mitochondrial
243090.RB13222(PF04832)ER
243090.RB886PF00028mitochondrial; plastid
243090.RB8176(PF13519)ER
243090.RB8030PF00884(ER); (plastid)
243090.RB10966(PF01679)ER
243090.RB273PF06439ER
243090.RB8752(PF07081)ER; (ER)
243090.RB10195(PF06283)ER; (ER)
243090.RB9504(PF13519)ER
243090.RB1451PF13360(mitochondrial)
243090.RB6400PF13360ER
243090.RB3317(PF01408)(mitochondrial)
243090.RB13157PF00884ER
243090.RB3635PF06439ER
243090.RB3675PF03983mitochondrial; plastid
243090.RB5310PF07632ER
243090.RB5952PF12044ER
243090.RB11142PF13360ER
243090.RB2420(PF01408)(mitochondrial)
243090.RB3338(PF01408)(mitochondrial)
243090.RB11994(PF05448)mitochondrial
243090.RB10734(PF13365)(mitochondrial)
243090.RB11463(PF13570) PF13360(mitochondrial)
243090.RB7193(PF01408)mitochondrial
243090.RB8479(PF16871)ER
243090.RB4292(PF12902)mitochondrial
243090.RB2663PF00884ER
243090.RB1464PF00884ER
243090.RB6858(PF01408)ER
243090.RB148(PF07517) (PF01043)(plastid)
243090.RB5727(PF01408)mitochondrial; (mitochondrial)
243090.RB3379(PF13517) PF07593(ER)
243090.RB1610PF00884ER
243090.RB11799(PF01457)ER
243090.RB736PF06439ER
243090.RB684PF00884ER
243090.RB686PF00884ER
243090.RB2707PF00884(mitochondrial); (plastid)
243090.RB11482(PF14863)ER
243090.RB11650(PF01408)(mitochondrial)
243090.RB4667PF13360ER
243090.RB3944PF06439(mitochondrial); plastid
243090.RB13131(PF13517)ER; (ER)
243090.RB409PF00884ER
243090.RB10117PF00884ER
243090.RB9421(PF13519)ER
243090.RB9427(PF00092)(ER)
243090.RB5272PF13360(mitochondrial)
243090.RB3006(PF13088)ER
243090.RB8750(PF07081)ER
243090.RB7120PF13360mitochondrial; plastid
243090.RB7225(PF03629)ER
243090.RB7229(PF13385)(mitochondrial)
243090.RB6199(PF01408)(mitochondrial)
243090.RB3023(PF13180)ER
243090.RB2085PF00884ER
243090.RB720PF00884(ER)
243090.RB7598(PF14863)(mitochondrial)
243090.RB9026(PF01408)(mitochondrial)
243090.RB3919(PF13517)(mitochondrial)
243090.RB605PF00884ER
243090.RB607PF00884ER
243090.RB8002PF00884ER
243090.RB9235(PF05050)mitochondrial; (mitochondrial)
243090.RB9239(PF05050)mitochondrial; (mitochondrial)
243090.RB8789(PF13517)mitochondrial
243090.RB4787PF00884ER
243090.RB10801(PF13519)mitochondrial
243090.RB5811(PF06283)ER
243090.RB10027(PF01841)(mitochondrial)
243090.RB6615PF06439ER
243090.RB12562PF13360(mitochondrial); (ER)
243090.RB12564(PF01408)(mitochondrial)
243090.RB3501PF07632(mitochondrial); (ER)
243090.RB3500PF07632ER
243090.RB7557(PF00092)ER
243090.RB11502(PF14863)ER
243090.RB11055(PF13088)ER
243090.RB6166PF13495(mitochondrial)
243090.RB9664(PF13768)(ER)
243090.RB5195PF00884mitochondrial; (mitochondrial)
243090.RB13259(PF13204)(mitochondrial)
243090.RB2377PF00884(mitochondrial)
243090.RB9606PF03983ER
243090.RB9604(PF12894)ER
243090.RB6490(PF13180) (PF13365)(ER)
243090.RB5608PF06439(mitochondrial)
243090.RB198PF00884ER
243090.RB8895(PF13088)(mitochondrial); plastid
243090.RB6395(PF13429)(mitochondrial)
243090.RB760PF00884ER
243090.RB5417PF00884ER
243090.RB500(PF13519)ER
243090.RB10269(PF13653)ER
243090.RB10266(PF01408)(mitochondrial)
243090.RB2613PF00884(ER)
243090.RB4707PF06439ER
243090.RB524(PF06283)ER
243090.RB4954(PF13899)(ER)
243090.RB6409(PF12006)mitochondrial
243090.RB10249(PF13180)ER
243090.RB8763(PF00092)ER
243090.RB7911(PF13365)mitochondrial
243090.RB9982(PF01408)(mitochondrial)
243090.RB728PF06439ER
243090.RB4851PF00884ER
243090.RB3876PF00884ER
243090.RB2479(PF05050)mitochondrial
243090.RB3309PF00884ER
243090.RB10165(PF01841)ER
243090.RB1359(PF13180) (PF13365)plastid
243090.RB9518PF03983ER
243090.RB8039PF13360ER
243090.RB5305PF00884ER
243090.RB4971(PF14311)(ER)
243090.RB9530PF00884 PF14707
243090.RB5143(PF13088)plastid
243090.RB3003PF13360(plastid)
243090.RB12409(PF13519) (PF13768)
243090.RB9110PF13360(plastid)
243090.RB11088(PF13517) PF07593
243090.RB2013(PF07517) (PF01043)
243090.RB9289(PF13517) PF07593
243090.RB3388(PF13517) PF07593
243090.RB9156(PF13517) PF07593
243090.RB8596PF00884 PF16347
243090.RB2732PF00884(plastid)
243090.RB815(PF13276)(plastid)
243090.RB5841(PF13385)(ER)
243090.RB4619(PF01408)(mitochondrial)
243090.RB11769(PF03160) PF00028
243090.RB8799(PF01408)(plastid)
243090.RB9650PF00884 PF16347
243090.RB11706(PF13180) (PF13365)
243090.RB9222(PF13180) (PF13899)
243090.RB12089PF00884(mitochondrial)
243090.RB12084PF06439(plastid)
243090.RB10232PF00884(mitochondrial)
243090.RB633(PF03098)(plastid)
243090.RB9241(PF05050)(mitochondrial)
243090.RB12752(PF13180) (PF13365)
243090.RB6486PF13360(mitochondrial)
243090.RB1235(PF01408)(ER)
243090.RB7503(PF00092) (PF13768)
243090.RB4880PF00884 PF16347
243090.RB5421(PF13385)(mitochondrial)
243090.RB1736PF00884(mitochondrial)
243090.RB1739(PF01841)(ER)
243090.RB9091PF00884(mitochondrial)
243090.RB2833(PF01408)(plastid)
243090.RB3353(PF13088)(ER)
243090.RB11127PF00884 PF16347
243090.RB92(PF13385)(mitochondrial)
243090.RB3265(PF01408)(mitochondrial)
243090.RB9722(PF14240)(mitochondrial)
243090.RB352PF00884(ER)
243090.RB2701PF00884 PF16347
243090.RB7871(PF04734)(plastid)
243090.RB2062(PF13180) (PF13365)
243090.RB10612PF00884(ER)
243090.RB609(PF05448)(mitochondrial)
243090.RB5031PF06439(plastid)
243090.RB9442(PF04734)(plastid)
243090.RB4502(PF01679)ER; not used
243090.RB10599PF00884 PF16347
243090.RB6914(PF13517) PF07593
243090.RB5294PF00884 PF16347
243090.RB46(PF13365)(plastid)
243090.RB3177PF00884plastid
243090.RB763PF00884 (PF03629)
243090.RB1555(PF01408)(ER)
243090.RB406PF00884 PF16347
243090.RB13048PF13360(plastid)
243090.RB7028(PF13088)plastid
243090.RB1355(PF01182)(mitochondrial)
243090.RB2416(PF01841)
243090.RB13148PF00884
243090.RB7408(PF13180)
243090.RB5140(PF01408)
243090.RB6432(PF13385)
243090.RB9499(PF07726)
243090.RB1475PF00884
243090.RB1477PF00884
243090.RB5776(PF01408)
243090.RB3340(PF01182)
243090.RB3349(PF13415)
243090.RB12400(PF01694)
243090.RB11470(PF14240)
243090.RB3648(PF01408)
243090.RB8505PF13360
243090.RB5901(PF00092)
243090.RB1456PF00884
243090.RB5756(PF13517)
243090.RB4106(PF08357)
243090.RB6860(PF01408)
243090.RB7995PF00884
243090.RB3999PF13495
243090.RB3195(PF13180)
243090.RB9132(PF01408)
243090.RB2710(PF01694)
243090.RB171(PF13276)
243090.RB2960PF13360
243090.RB5380PF13360
243090.RB2558PF13495
243090.RB348PF00884
243090.RB8542(PF00406)
243090.RB2055(PF00092)
243090.RB7481PF00884
243090.RB6671(PF13429)
243090.RB2532(PF01182)
243090.RB6518(PF13385)
243090.RB11219(PF01885)
243090.RB384(PF01885)
243090.RB9192PF00884
243090.RB9751(PF06283)
243090.RB9755PF00884
243090.RB2096(PF12006)
243090.RB2092(PF16011)
243090.RB11762(PF01408)
243090.RB2135PF00884
243090.RB4798(PF07081)
243090.RB3070(PF01408)
243090.RB12942PF13360
243090.RB12941(PF13276)
243090.RB9651(PF03629)
243090.RB1798(PF07726)
243090.RB614PF13360
243090.RB10035PF13360
243090.RB11803(PF13276)
243090.RB1240PF06439
243090.RB7099(PF00092)
243090.RB1499(PF07726)
243090.RB6056(PF07726)
243090.RB10839PF13360
243090.RB2432(PF05277)
243090.RB9108(PF07726)
243090.RB10423(PF13385)
243090.RB497(PF07726)
243090.RB4239(PF13385)
243090.RB13037(PF07726)
243090.RB13038(PF01841)
243090.32471045PF00884
243090.RB4270(PF13365)
243090.RB3804(PF13385)
243090.RB3556(PF01182)
243090.RB1063(PF01408)
243090.RB1939(PF01408)
243090.RB7500(PF07726)
243090.RB5282PF00884
243090.RB5281PF00884
243090.RB5285PF06439
243090.RB5424PF00884
243090.RB4081(PF07726)
243090.RB3144PF13495
243090.RB2364(PF01694)
243090.RB11913(PF07726)
243090.RB3770(PF01408)
243090.RB4278(PF12902)
243090.RB7070(PF03118)
243090.RB6387(PF01694)
243090.RB11916(PF01841)
243090.RB9096(PF01704)
243090.RB2837PF13360
243090.RB9971(PF01408)
243090.RB12112PF03983
243090.RB8173(PF07726)
243090.RB5887(PF13276)
243090.RB10503(PF01408)
243090.RB1192PF13495
243090.RB3849PF00884
243090.RB8759(PF13519)
243090.RB4928(PF13180)
243090.RB4823(PF08695)
243090.RB9502(PF00092)
243090.RB5442(PF13768)
243090.RB4017PF00884
243090.RB13155PF00884
243090.RB13150(PF03629)
243090.RB12432PF00884
243090.RB12431PF00884
243090.RB12434(PF13431)
243090.RB7772PF00884
243090.RB10541(PF13431)
243090.RB5763(PF13517)
243090.RB105(PF13517)
243090.RB3330(PF01408)
243090.RB4294(PF00112)
243090.RB6448(PF00092)
243090.RB10138PF06439
243090.RB8983(PF07726)
243090.RB12038(PF01408)
243090.RB10670PF00884
243090.RB11673(PF06421)
243090.RB3627(PF01841)
243090.RB6873PF00884
243090.RB6708(PF13276)
243090.RB8085PF13360
243090.RB7867(PF00406)
243090.RB165(PF13276)
243090.RB1630(PF06421)
243090.RB7494(PF01408)
243090.RB10116PF00884
243090.RB8768(PF07726)
243090.RB4053(PF00092)
243090.RB9950(PF03160)
243090.RB5876(PF13385)
243090.RB11750(PF13276)
243090.RB2081(PF01847)
243090.RB1190(PF13276)
243090.RB4621(PF06283)
243090.RB6977(PF01704)
243090.RB4015PF06439
243090.RB1257(PF13088)
243090.RB5557PF13360
243090.RB12092PF00884
243090.RB8781(PF01408)
243090.RB6956PF00884
243090.RB5782(PF13365)
243090.RB4784PF00884
243090.RB10025(PF01841)
243090.RB3509(PF06283)
243090.RB3504PF07632
243090.RB9666(PF01694)
243090.RB1079(PF00406)
243090.RB10048(PF03629)
243090.RB11319(PF13271)
243090.RB1924(PF03160)
243090.RB7538PF13360
243090.RB5290(PF01408)
243090.RB569PF06439
243090.RB12526(PF01694)
243090.RB3764PF07632
243090.RB11334(PF13271)
243090.RB2490(PF05050)not used
243090.RB2498(PF05050)
243090.RB3157PF13495
243090.RB11131(PF03098)
243090.RB7200(PF13899)
243090.RB1964(PF03118)
243090.RB4282(PF13582)
243090.RB7399PF13495
243090.RB749PF13360
243090.RB741(PF13385)
243090.RB9089(PF01182)
243090.RB82(PF01841)
243090.RB2842(PF13385)
243090.RB7238(PF13517)
243090.RB11116PF00884
243090.RB5644PF06439
243090.RB13184(PF13899)
243090.RB6603(PF07726)
243090.RB13237(PF00092)
243090.RB4937(PF01408)
243090.RB4583(PF01148)
243090.RB3442(PF01408)
243090.RB10517(PF07726)
243090.RB10512(PF01841)
243090.RB11397(PF04832)
243090.RB874(PF13517)
243090.RB706(PF13276)
243090.RB10706PF13360
243090.RB4835(PF01694)
243090.RB4300(PF13276)
243090.RB12626(PF03118)

Detailed merged results for each protein sequence

Individual results for each protein sequence

Genome based results

Summary

  • Gram negative: YES (FDR = 0.5 %)
  • Functional Type III secretion system: NO (FDR = 12.5 %)
  • Functional Type IV secretion system: NO (FDR = 7.2 %)
  • Functional Type VI secretion system: YES (FDR = 7.7 %)
    Estimated copy number = 7.375 (59/8 KEGG proteins)

Individual results for each secretion system

Parameters:

==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================