Metamenu

Genomes encoding eukaryotic-like proteins

PF03118 Bacterial RNA polymerase, alpha chain C terminal domain

Copy number in non-pathogens:
Mean=1.05 Stddev=0.31

Genomes significantly enriched in this eukaryotic-like domain (ELD; score >= 4):

Genome Class* ELD score Number of proteins containing this domain
Bacteroides coprophilus DSM 18228 = JCM 13818 s 9 4
Bacteroides thetaiotaomicron s 6 3
Bacteroides vulgatus s 6 3
Parabacteroides distasonis s 6 3
Bacteroides thetaiotaomicron s 9 4
Blautia obeum s 6 3
Tyzzerella nexilis DSM 1787 s 6 3
Bacteroides coprophilus DSM 18228 = JCM 13818 s 9 4
Oribacterium sp. oral taxon 108 str. F0425 s 6 3
Lachnospiraceae bacterium A4 s 6 3
Lachnospiraceae bacterium A2 s 9 4
Plesiomonas shigelloides 302-73 s 6 3
Rhodopirellula baltica SWK14 s 6 3
Bacteroides fragilis str. 2-F-2 #4 s 6 3
Bacteroides fragilis str. 2-F-2 #7 s 6 3
Bacteroides fragilis str. 2-F-2 #5 s 6 3
Bacteroides fragilis str. 3988T(B)14 s 6 3
Bradyrhizobium sp. Ai1a-2 s 6 3
Bacteroides fragilis 3_1_12 s 6 3
Bacteroides sp. 4_3_47FAA s 6 3
Stomatobaculum longum s 6 3
Oribacterium asaccharolyticum ACB7 s 6 3
Bacteroides cellulosilyticus CL02T12C19 s 9 4
Bacteroides dorei CL02T00C15 s 6 3
Bacteroides dorei CL02T12C06 s 6 3
Bacteroides salyersiae CL02T12C01 s 6 3
Comamonas sp. B-9 s 9 4
Butyrivibrio sp. FCS014 s 6 3
Oribacterium sp. FC2011 s 6 3
Butyrivibrio sp. AE2032 s 9 4
Butyrivibrio sp. AE3004 s 9 4
Tissierellia bacterium S5-A11 s 6 3
Bacteroides fragilis s 6 3
Bacteroides fragilis s 6 3
Bacteroides fragilis s 6 3
Burkholderia cepacia s 6 3
Burkholderia cepacia s 6 3
Burkholderia territorii s 12 5
Bacillus cereus s 6 3
Prevotella ruminicola s 6 3
Paenibacillus odorifer s 6 3
Bacillus cereus s 6 3

*p=pathogen;s=symbiont