Genomes encoding eukaryotic-like proteins
PF12006 Protein of unknown function (DUF3500)
Copy number in non-pathogens:
Mean=0.09 Stddev=0.40
Genomes significantly enriched in this eukaryotic-like domain (ELD; score >= 4):
| Genome | Class* | ELD score | Number of proteins containing this domain |
|---|---|---|---|
| Verrucomicrobium sp. BvORR034 | s | 7 | 3 |
| Verrucomicrobium sp. BvORR106 | s | 9 | 4 |
| Nocardia arthritidis NBRC 100137 | s | 7 | 3 |
| Nocardia vaccinii NBRC 15922 | s | 7 | 3 |
| Nocardia asiatica NBRC 100129 | s | 9 | 4 |
| Rhodococcus fascians NBRC 12155 = LMG 3623 | s | 4 | 2 |
| Rhodococcus jostii NBRC 16295 | s | 4 | 2 |
| Mycobacterium cosmeticum | s | 4 | 2 |
| Chthoniobacter flavus Ellin428 | s | 4 | 2 |
| Rhizobium sp. CF080 | s | 4 | 2 |
| Rhodopirellula baltica SWK14 | s | 7 | 3 |
| Cyclobacterium marinum DSM 745 | s | 4 | 2 |
| Algoriphagus machipongonensis | s | 4 | 2 |
| Actinopolymorpha alba DSM 45243 | s | 4 | 2 |
| Pseudonocardia sp. P2 | s | 4 | 2 |
| Pseudonocardia sp. P1 | s | 4 | 2 |
| Rhodococcus fascians NBRC 12155 = LMG 3623 | s | 4 | 2 |
| Streptomyces sp. HGB0020 | s | 4 | 2 |
| Actinomadura madurae LIID-AJ290 | s | 4 | 2 |
| Actinoplanes subtropicus | s | 9 | 4 |
| Amycolatopsis jejuensis | s | 4 | 2 |
| Arenibacter algicola | s | 4 | 2 |
| Pseudonocardia sp. HH130630-07 | s | 4 | 2 |
| Curtobacterium pusillum | s | 4 | 2 |
| Streptomyces rhizosphaericus | s | 4 | 2 |
*p=pathogen;s=symbiont
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