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Genomes encoding eukaryotic-like proteins

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PF12006 Protein of unknown function (DUF3500)

Copy number in non-pathogens:
Mean=0.09 Stddev=0.40

Genomes significantly enriched in this eukaryotic-like domain (ELD; score >= 4):

Genome Class* ELD score Number of proteins containing this domain
Verrucomicrobium sp. BvORR034 s 7 3
Verrucomicrobium sp. BvORR106 s 9 4
Nocardia arthritidis NBRC 100137 s 7 3
Nocardia vaccinii NBRC 15922 s 7 3
Nocardia asiatica NBRC 100129 s 9 4
Rhodococcus fascians NBRC 12155 = LMG 3623 s 4 2
Rhodococcus jostii NBRC 16295 s 4 2
Mycobacterium cosmeticum s 4 2
Chthoniobacter flavus Ellin428 s 4 2
Rhizobium sp. CF080 s 4 2
Rhodopirellula baltica SWK14 s 7 3
Cyclobacterium marinum DSM 745 s 4 2
Algoriphagus machipongonensis s 4 2
Actinopolymorpha alba DSM 45243 s 4 2
Pseudonocardia sp. P2 s 4 2
Pseudonocardia sp. P1 s 4 2
Rhodococcus fascians NBRC 12155 = LMG 3623 s 4 2
Streptomyces sp. HGB0020 s 4 2
Actinomadura madurae LIID-AJ290 s 4 2
Actinoplanes subtropicus s 9 4
Amycolatopsis jejuensis s 4 2
Arenibacter algicola s 4 2
Pseudonocardia sp. HH130630-07 s 4 2
Curtobacterium pusillum s 4 2
Streptomyces rhizosphaericus s 4 2

*p=pathogen;s=symbiont

Release announcements

News

  • EffectiveDB genome mode fixed

    24.11.20
  • EFFECTIVEELD 5.2: EUKARYOTIC-LIKE DOMAIN PREDICTION UPGRADED TO PFAM 31

    20.08.17
  • EffectiveELD 5.1: Eukaryotic-like domain prediction upgraded to Pfam 29

    24.06.16

Latest publications

  • EffectiveDB-updates and novel features for a better annotation of bacterial secreted proteins and Type III, IV, VI secretion systems.
  • Prediction of microbial phenotypes based on comparative genomics.

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