Effective results for Nitrosococcus watsonii C-113 (eggnog40)

Summary

Number of putative secreted proteins: 56
- Predicted by T4SEpre: 0
- Predicted by EffectiveELD: 32 eukaryotic-like domains, contained in 56 proteins (6 high, 50 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): None

Protein based results

Putative secreted proteins (weak evidence indicated by parentheses)

ProteinEffectiveT3EffectiveCCBDT4SEpreEffectiveELDPredotar
105559.Nwat_2177(PF04561) (PF10385) (PF04565) (PF00562) (PF04563) (PF04560)
105559.Nwat_2165(PF04561) (PF10385) (PF04565) (PF00562) (PF04563) (PF04560)
105559.Nwat_2176(PF04998) (PF04983) (PF04997) (PF05000) (PF00623)
105559.Nwat_2164(PF04998) (PF04983) (PF04997) (PF05000) (PF00623)
105559.Nwat_0843(PF02931) PF02932(mitochondrial)
105559.Nwat_2174PF00177(mitochondrial)
105559.Nwat_2175(PF00164)(mitochondrial)
105559.Nwat_2171(PF00584)ER
105559.Nwat_2168PF00687(mitochondrial)
105559.Nwat_2163(PF00164)(mitochondrial)
105559.Nwat_2162PF00177(mitochondrial)
105559.Nwat_2626(PF00361)ER
105559.Nwat_2622(PF00361)ER
105559.Nwat_2623(PF00361)ER
105559.Nwat_1137(PF00361)ER
105559.Nwat_1136(PF00361)ER
105559.Nwat_1229(PF10142)(ER)
105559.Nwat_2368(PF03567)(mitochondrial)
105559.Nwat_2364(PF13469)mitochondrial
105559.Nwat_2917(PF06202)(mitochondrial); mitochondrial
105559.Nwat_1138(PF00361)ER
105559.Nwat_0893(PF13469)(mitochondrial)
105559.Nwat_1911(PF00361)ER
105559.Nwat_1913(PF00361)ER
105559.Nwat_1912(PF00361)ER
105559.Nwat_0105(PF13436)ER
105559.Nwat_2183(PF00584)ER
105559.Nwat_2180PF00687(mitochondrial)
105559.Nwat_1168(PF00361)ER
105559.Nwat_1169(PF00361)ER
105559.Nwat_1170(PF00361)ER
105559.Nwat_0569(PF00361)(ER)
105559.Nwat_0568(PF00361)ER
105559.Nwat_0567(PF00361)ER
105559.Nwat_0703PF06552(mitochondrial)
105559.Nwat_1140(PF00361)ER
105559.Nwat_2169(PF00298) (PF03946)
105559.Nwat_2378(PF13469)(ER)
105559.Nwat_1118(PF03567)(mitochondrial)
105559.Nwat_2181(PF00298) (PF03946)
105559.Nwat_2178(PF16320)
105559.Nwat_2179(PF00466)
105559.Nwat_2167(PF00466)
105559.Nwat_2166(PF16320)
105559.Nwat_1120(PF13469)
105559.Nwat_2371(PF13469)
105559.Nwat_2375(PF13469)
105559.Nwat_2376(PF13469)
105559.Nwat_1004(PF01991)
105559.Nwat_2365(PF03567)
105559.Nwat_1119(PF03567)
105559.Nwat_1288(PF06202)
105559.Nwat_0797(PF14701)
105559.Nwat_1315(PF00305)
105559.Nwat_1579(PF06202)
105559.Nwat_3123(PF00862)

Detailed merged results for each protein sequence

Individual results for each protein sequence

Genome based results

Summary

  • Gram negative: YES (FDR = 0.5 %)
  • Functional Type III secretion system: NO (FDR = 12.5 %)
  • Functional Type IV secretion system: NO (FDR = 7.2 %)
  • Functional Type VI secretion system: NO (FDR = 7.7 %)

Individual results for each secretion system

Parameters:

==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================