Metamenu

Genomes encoding eukaryotic-like proteins

PF04561 RNA polymerase Rpb2, domain 2

Copy number in non-pathogens:
Mean=0.97 Stddev=0.18

Genomes significantly enriched in this eukaryotic-like domain (ELD; score >= 4):

Genome Class* ELD score Number of proteins containing this domain
Nocardia africana NBRC 100379 s 5 2
Nocardia anaemiae NBRC 100462 s 5 2
Nocardia elegans NBRC 108235 s 5 2
Nocardia mexicana NBRC 108244 s 5 2
Nocardia crassostreae s 5 2
Nocardia mikamii NBRC 108933 s 5 2
Nocardia araoensis NBRC 100135 s 5 2
Nocardia pneumoniae NBRC 100136 s 5 2
Nocardia tenerifensis NBRC 101015 s 5 2
Nocardia otitidiscaviarum NBRC 14405 s 5 2
Nocardia transvalensis NBRC 15921 s 5 2
Nocardia farcinica IFM 10152 s 5 2
Salmonella enterica subsp. enterica serovar Typhi s 5 2
Ruminococcus sp. JC304 s 5 2
Bacteroides xylanisolvens SD CC 1b s 5 2
Bacteroides xylanisolvens SD CC 2a s 5 2
Staphylococcus aureus subsp. aureus s 5 2
Bacteroides thetaiotaomicron s 5 2
Escherichia coli s 5 2
Bacteroides ovatus s 5 2
Bifidobacterium longum s 5 2
Bacteroides xylanisolvens SD CC 1b s 5 2
Bacteroides xylanisolvens SD CC 2a s 5 2
Leptospira interrogans serovar Copenhageni str. Fiocruz LV192 s 5 2
Bacteroides ovatus ATCC 8483 s 5 2
Actinomadura flavalba DSM 45200 s 5 2
Bacteroides sp. D1 s 5 2
Bacteroides sp. 2_1_22 s 5 2
Bacteroides sp. 3_1_23 s 5 2
Bacteroides ovatus 3_8_47FAA s 5 2
Bacteroides sp. 1_1_30 s 5 2
Bacteroides ovatus CL03T12C18 s 5 2
Bacteroides xylanisolvens CL03T12C04 s 5 2
Nocardia brasiliensis ATCC 700358 p 5 2
Actinomadura madurae LIID-AJ290 s 5 2
Escherichia coli Nissle 1917 s 5 2
Frankia sp. CpI1-P s 5 2
Butyrivibrio sp. AE2032 s 5 2
Tissierellia bacterium S5-A11 s 5 2
Staphylococcus aureus s 5 2
Escherichia coli s 5 2
Bacteroides ovatus s 5 2
Salmonella enterica subsp. enterica serovar Kentucky s 5 2
Klebsiella pneumoniae s 5 2
Bacillus cereus s 5 2
Escherichia coli s 5 2
Bacteroides ovatus s 5 2
Bacteroides ovatus s 5 2
Bacteroides ovatus s 5 2
[Haemophilus] parasuis p 5 2
Bacteroides ovatus s 5 2
Bacillus cereus s 5 2

*p=pathogen;s=symbiont