Effective results for Paraprevotella xylaniphila YIT 11841 (eggnog40)
Summary
Number of putative secreted proteins: 231
- Predicted by T4SEpre: 0
- Predicted by EffectiveELD: 51 eukaryotic-like domains, contained in 231 proteins (57 high, 174 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): None
Protein based results
Putative secreted proteins (weak evidence indicated by parentheses)
| Protein | EffectiveT3 | EffectiveCCBD | T4SEpre | EffectiveELD | Predotar |
|---|---|---|---|---|---|
| 762982.HMPREF9442_02371 | (PF00703) (PF02837) (PF16355) (PF02836) | ER | |||
| 762982.HMPREF9442_03114 | (PF00703) (PF02837) (PF16355) (PF02836) | mitochondrial | |||
| 762982.HMPREF9442_01583 | (PF00703) (PF02837) (PF16355) (PF02836) | ER | |||
| 762982.HMPREF9442_01115 | (PF00703) (PF02837) (PF16355) (PF02836) | ER | |||
| 762982.HMPREF9442_00262 | (PF00703) (PF02837) (PF16355) (PF02836) | ER | |||
| 762982.HMPREF9442_03462 | (PF00703) (PF02837) (PF16355) (PF02836) | (ER); ER | |||
| 762982.HMPREF9442_00869 | (PF00703) (PF02837) (PF02836) | ER | |||
| 762982.HMPREF9442_00368 | (PF00703) (PF02837) (PF02836) | (ER) | |||
| 762982.HMPREF9442_02846 | (PF00703) (PF02837) (PF02836) | (ER) | |||
| 762982.HMPREF9442_01298 | (PF00703) (PF02837) (PF02836) | ER | |||
| 762982.HMPREF9442_02876 | (PF00703) (PF02837) (PF02836) | ER | |||
| 762982.HMPREF9442_01078 | (PF13290) (PF04616) | (ER) | |||
| 762982.HMPREF9442_01307 | (PF00703) (PF02837) (PF16355) (PF02836) | ||||
| 762982.HMPREF9442_01309 | (PF00703) (PF02837) | ER | |||
| 762982.HMPREF9442_00965 | (PF13517) (PF00703) (PF02837) (PF02836) | ||||
| 762982.HMPREF9442_01437 | (PF00703) (PF02837) | ER | |||
| 762982.HMPREF9442_03043 | (PF00703) (PF02837) | ER | |||
| 762982.HMPREF9442_00447 | (PF13306) | ER | |||
| 762982.HMPREF9442_00446 | (PF13306) | ER | |||
| 762982.HMPREF9442_01408 | PF02469 | ER | |||
| 762982.HMPREF9442_01409 | PF02469 | ER | |||
| 762982.HMPREF9442_01404 | (PF13517) | (ER) | |||
| 762982.HMPREF9442_01405 | (PF13517) | ER; (ER) | |||
| 762982.HMPREF9442_01401 | (PF13517) | ER | |||
| 762982.HMPREF9442_03065 | (PF06964) | ER | |||
| 762982.HMPREF9442_03483 | (PF04616) | ER | |||
| 762982.HMPREF9442_02678 | PF17170 | ER | |||
| 762982.HMPREF9442_00027 | PF17170 | ER | |||
| 762982.HMPREF9442_01098 | (PF00295) | ER | |||
| 762982.HMPREF9442_01652 | PF17170 | ER | |||
| 762982.HMPREF9442_00877 | PF17170 | ER | |||
| 762982.HMPREF9442_01273 | PF02469 | ER | |||
| 762982.HMPREF9442_01276 | PF02469 | ER | |||
| 762982.HMPREF9442_01503 | (PF05704) | mitochondrial; (mitochondrial) | |||
| 762982.HMPREF9442_01881 | (PF13517) | ER | |||
| 762982.HMPREF9442_01867 | (PF02055) | ER | |||
| 762982.HMPREF9442_00595 | (PF04616) | ER | |||
| 762982.HMPREF9442_01462 | (PF13290) | ER | |||
| 762982.HMPREF9442_03228 | (PF04616) | ER | |||
| 762982.HMPREF9442_03226 | PF05426 | (ER) | |||
| 762982.HMPREF9442_02510 | PF02469 | ER; (ER) | |||
| 762982.HMPREF9442_02515 | (PF00295) | ER | |||
| 762982.HMPREF9442_02514 | (PF02055) | ER | |||
| 762982.HMPREF9442_02516 | PF05426 | ER | |||
| 762982.HMPREF9442_01077 | (PF04616) | ER | |||
| 762982.HMPREF9442_00857 | PF17170 | ER | |||
| 762982.HMPREF9442_00126 | (PF04616) | ER | |||
| 762982.HMPREF9442_02502 | PF05426 | ER | |||
| 762982.HMPREF9442_02509 | PF02469 | ER | |||
| 762982.HMPREF9442_01065 | PF02469 | ER | |||
| 762982.HMPREF9442_00390 | PF17170 | ER | |||
| 762982.HMPREF9442_01682 | (PF15979) | ER | |||
| 762982.HMPREF9442_02978 | (PF15979) | (mitochondrial) | |||
| 762982.HMPREF9442_02977 | (PF03629) | (mitochondrial) | |||
| 762982.HMPREF9442_02975 | (PF04616) | ER | |||
| 762982.HMPREF9442_02974 | (PF07944) | ER | |||
| 762982.HMPREF9442_00007 | (PF13905) | ER | |||
| 762982.HMPREF9442_03025 | (PF00295) | ER | |||
| 762982.HMPREF9442_01052 | (PF00295) | ER | |||
| 762982.HMPREF9442_00632 | PF02469 | ER | |||
| 762982.HMPREF9442_01302 | (PF15979) | mitochondrial; (mitochondrial) | |||
| 762982.HMPREF9442_01306 | (PF04616) | ER | |||
| 762982.HMPREF9442_00125 | (PF04616) | ER; (ER) | |||
| 762982.HMPREF9442_02968 | (PF14587) | ER | |||
| 762982.HMPREF9442_02963 | (PF16387) | ER | |||
| 762982.HMPREF9442_01542 | (PF16338) | ER | |||
| 762982.HMPREF9442_01544 | (PF04616) | ER | |||
| 762982.HMPREF9442_02146 | (PF13517) | ER | |||
| 762982.HMPREF9442_01045 | (PF13905) | ER | |||
| 762982.HMPREF9442_00790 | PF17170 | ER | |||
| 762982.HMPREF9442_01690 | (PF02055) | ER | |||
| 762982.HMPREF9442_00972 | (PF13306) | (ER) | |||
| 762982.HMPREF9442_01813 | (PF01128) | (ER) | |||
| 762982.HMPREF9442_01819 | (PF04616) | ER | |||
| 762982.HMPREF9442_03419 | (PF01094) | ER | |||
| 762982.HMPREF9442_03093 | (PF06964) | ER | |||
| 762982.HMPREF9442_02233 | PF17170 | ER; (ER) | |||
| 762982.HMPREF9442_03435 | (PF04616) | ER | |||
| 762982.HMPREF9442_02126 | (PF06964) | ER | |||
| 762982.HMPREF9442_01372 | (PF13306) | ER | |||
| 762982.HMPREF9442_00177 | (PF13517) | ER | |||
| 762982.HMPREF9442_00176 | (PF06964) | ER | |||
| 762982.HMPREF9442_00995 | (PF16757) | ER | |||
| 762982.HMPREF9442_02848 | (PF04616) | (mitochondrial) | |||
| 762982.HMPREF9442_02845 | (PF06964) | ER | |||
| 762982.HMPREF9442_02840 | PF05426 | ER | |||
| 762982.HMPREF9442_00427 | PF02469 | ER; (ER) | |||
| 762982.HMPREF9442_00422 | PF05426 | ER | |||
| 762982.HMPREF9442_03088 | (PF13517) | ER | |||
| 762982.HMPREF9442_03089 | (PF13306) | (ER) | |||
| 762982.HMPREF9442_03157 | (PF04616) | ER | |||
| 762982.HMPREF9442_03424 | PF01823 | ER | |||
| 762982.HMPREF9442_03422 | PF01823 | ER | |||
| 762982.HMPREF9442_03423 | PF01823 | ER | |||
| 762982.HMPREF9442_00761 | PF17170 | ER | |||
| 762982.HMPREF9442_00168 | (PF04616) | ER | |||
| 762982.HMPREF9442_00169 | (PF04616) | ER | |||
| 762982.HMPREF9442_02217 | (PF03629) | ER | |||
| 762982.HMPREF9442_02212 | PF17170 | ER | |||
| 762982.HMPREF9442_01662 | PF17170 | ER | |||
| 762982.HMPREF9442_00243 | PF02469 | ER | |||
| 762982.HMPREF9442_00245 | PF02469 | ER | |||
| 762982.HMPREF9442_00244 | PF02469 | ER | |||
| 762982.HMPREF9442_02260 | PF17170 | ER | |||
| 762982.HMPREF9442_01616 | (PF07944) | ER | |||
| 762982.HMPREF9442_01612 | (PF13306) | (mitochondrial); mitochondrial | |||
| 762982.HMPREF9442_00747 | PF05426 | ER | |||
| 762982.HMPREF9442_01293 | (PF04616) | ER | |||
| 762982.HMPREF9442_01292 | (PF04616) | ER | |||
| 762982.HMPREF9442_01291 | (PF04616) | ER | |||
| 762982.HMPREF9442_01295 | (PF03629) | ER | |||
| 762982.HMPREF9442_01294 | (PF04616) | ER | |||
| 762982.HMPREF9442_00419 | PF05426 | ER | |||
| 762982.HMPREF9442_00414 | (PF07944) | ER | |||
| 762982.HMPREF9442_03299 | (PF04616) | ER | |||
| 762982.HMPREF9442_03298 | (PF04616) | ER | |||
| 762982.HMPREF9442_03475 | PF02469 | ER | |||
| 762982.HMPREF9442_03471 | (PF04616) | ER | |||
| 762982.HMPREF9442_03472 | PF02469 | (ER) | |||
| 762982.HMPREF9442_02271 | PF05426 | ER | |||
| 762982.HMPREF9442_02279 | (PF13905) | ER | |||
| 762982.HMPREF9442_02706 | PF17170 | ER | |||
| 762982.HMPREF9442_02497 | (PF16332) | ER | |||
| 762982.HMPREF9442_00884 | (PF13306) | ER | |||
| 762982.HMPREF9442_01935 | PF02469 | ER | |||
| 762982.HMPREF9442_01289 | (PF15979) | ER | |||
| 762982.HMPREF9442_00463 | (PF11790) | ER | |||
| 762982.HMPREF9442_00464 | (PF04616) | ER | |||
| 762982.HMPREF9442_01425 | PF02469 | ER | |||
| 762982.HMPREF9442_01426 | PF02469 | ER | |||
| 762982.HMPREF9442_03463 | PF02469 | ER | |||
| 762982.HMPREF9442_03469 | (PF04616) | ER | |||
| 762982.HMPREF9442_02737 | (PF13306) | ER | |||
| 762982.HMPREF9442_01124 | (PF13290) | ER | |||
| 762982.HMPREF9442_01636 | (PF04616) | ER | |||
| 762982.HMPREF9442_01387 | (PF01501) | (ER) | |||
| 762982.HMPREF9442_00476 | (PF13517) | ER | |||
| 762982.HMPREF9442_00386 | (PF06964) | ER | |||
| 762982.HMPREF9442_00387 | (PF04616) | ER; (ER) | |||
| 762982.HMPREF9442_03387 | (PF04230) | (ER) | |||
| 762982.HMPREF9442_02037 | PF17170 | ER | |||
| 762982.HMPREF9442_01396 | (PF08011) (PF09820) | ||||
| 762982.HMPREF9442_02539 | (PF08011) (PF09820) | ||||
| 762982.HMPREF9442_02505 | PF02469 | (ER) | |||
| 762982.HMPREF9442_02501 | PF05426 | (mitochondrial) | |||
| 762982.HMPREF9442_01303 | (PF02837) (PF03629) | ||||
| 762982.HMPREF9442_01810 | (PF13905) | (ER) | |||
| 762982.HMPREF9442_01569 | (PF04422) (PF04432) | ||||
| 762982.HMPREF9442_02237 | (PF04616) | (mitochondrial) | |||
| 762982.HMPREF9442_03450 | (PF08011) (PF09820) | ||||
| 762982.HMPREF9442_02661 | (PF01531) | (mitochondrial) | |||
| 762982.HMPREF9442_02269 | (PF16757) | (ER) | |||
| 762982.HMPREF9442_01438 | (PF02837) (PF03629) | ||||
| 762982.HMPREF9442_02471 | (PF04422) (PF04432) | ||||
| 762982.HMPREF9442_01606 | (PF01128) | (mitochondrial) | |||
| 762982.HMPREF9442_01429 | PF02469 | (ER) | |||
| 762982.HMPREF9442_01400 | (PF04616) | ||||
| 762982.HMPREF9442_03062 | (PF13151) | ||||
| 762982.HMPREF9442_00028 | PF17170 | ||||
| 762982.HMPREF9442_01890 | (PF12437) | ||||
| 762982.HMPREF9442_01270 | (PF04616) | ||||
| 762982.HMPREF9442_01496 | (PF01501) | ||||
| 762982.HMPREF9442_01502 | (PF01501) | ||||
| 762982.HMPREF9442_01501 | (PF05686) | ||||
| 762982.HMPREF9442_01500 | (PF01531) | ||||
| 762982.HMPREF9442_01464 | (PF13517) | ||||
| 762982.HMPREF9442_02179 | PF05426 | ||||
| 762982.HMPREF9442_01675 | (PF02485) | not used | |||
| 762982.HMPREF9442_00009 | (PF05693) | ||||
| 762982.HMPREF9442_00311 | PF05212 | ||||
| 762982.HMPREF9442_03115 | (PF06964) | ||||
| 762982.HMPREF9442_03112 | (PF11790) | ||||
| 762982.HMPREF9442_02409 | (PF04230) | ||||
| 762982.HMPREF9442_01300 | (PF07944) | ||||
| 762982.HMPREF9442_00309 | (PF03412) | ||||
| 762982.HMPREF9442_00306 | (PF03412) | ||||
| 762982.HMPREF9442_02369 | (PF16314) | ||||
| 762982.HMPREF9442_02410 | (PF04432) | ||||
| 762982.HMPREF9442_02090 | (PF02485) | ||||
| 762982.HMPREF9442_02091 | (PF03412) | ||||
| 762982.HMPREF9442_01047 | (PF03412) | ||||
| 762982.HMPREF9442_01044 | (PF03412) | ||||
| 762982.HMPREF9442_01957 | (PF08011) | not used | |||
| 762982.HMPREF9442_01696 | (PF09820) | ||||
| 762982.HMPREF9442_00793 | PF12812 | ||||
| 762982.HMPREF9442_00152 | (PF12437) | ||||
| 762982.HMPREF9442_01553 | (PF04616) | ||||
| 762982.HMPREF9442_02045 | PF17170 | ||||
| 762982.HMPREF9442_01961 | (PF04230) | ||||
| 762982.HMPREF9442_01498 | (PF01501) | ||||
| 762982.HMPREF9442_01369 | (PF01991) | ||||
| 762982.HMPREF9442_01565 | (PF14307) | ||||
| 762982.HMPREF9442_01567 | (PF04230) | ||||
| 762982.HMPREF9442_02540 | (PF02357) | ||||
| 762982.HMPREF9442_03438 | (PF05704) | ||||
| 762982.HMPREF9442_01793 | (PF13905) | ||||
| 762982.HMPREF9442_01574 | PF02469 | ||||
| 762982.HMPREF9442_02847 | (PF04616) | ||||
| 762982.HMPREF9442_00686 | (PF13306) | ||||
| 762982.HMPREF9442_00428 | PF02469 | ||||
| 762982.HMPREF9442_02335 | (PF02357) | ||||
| 762982.HMPREF9442_01389 | (PF14307) | ||||
| 762982.HMPREF9442_01344 | (PF13517) | ||||
| 762982.HMPREF9442_03453 | (PF02357) | ||||
| 762982.HMPREF9442_01759 | PF16269 | ||||
| 762982.HMPREF9442_00248 | (PF16338) | ||||
| 762982.HMPREF9442_03449 | (PF08011) | not used | |||
| 762982.HMPREF9442_02669 | (PF08011) | not used | |||
| 762982.HMPREF9442_03442 | (PF01128) | ||||
| 762982.HMPREF9442_01617 | (PF07944) | ||||
| 762982.HMPREF9442_02528 | (PF01531) | ||||
| 762982.HMPREF9442_00418 | (PF00295) | ||||
| 762982.HMPREF9442_00413 | (PF16338) | ||||
| 762982.HMPREF9442_03501 | (PF09820) | ||||
| 762982.HMPREF9442_02670 | (PF09820) | ||||
| 762982.HMPREF9442_03476 | PF02469 | ||||
| 762982.HMPREF9442_02470 | (PF04230) | ||||
| 762982.HMPREF9442_02474 | (PF08011) | not used | |||
| 762982.HMPREF9442_02496 | (PF07944) | ||||
| 762982.HMPREF9442_00462 | (PF09820) | ||||
| 762982.HMPREF9442_00467 | (PF01715) | ||||
| 762982.HMPREF9442_00465 | (PF02689) | ||||
| 762982.HMPREF9442_01421 | (PF13517) | ||||
| 762982.HMPREF9442_00269 | (PF01715) | ||||
| 762982.HMPREF9442_02395 | (PF03412) | ||||
| 762982.HMPREF9442_03465 | (PF02357) | ||||
| 762982.HMPREF9442_00725 | (PF14587) | ||||
| 762982.HMPREF9442_03358 | PF07959 | ||||
| 762982.HMPREF9442_01419 | (PF13517) | ||||
| 762982.HMPREF9442_03499 | (PF02357) | ||||
| 762982.HMPREF9442_02259 | PF17170 |
Detailed merged results for each protein sequence
- Detailed merged results as table (merge_results.html)
- Detailed merged results as tab delimited file (merge_results.csv)
Individual results for each protein sequence
- EffectiveELD predictions (PROTEINS.ELD.TXT)
- Predotar predictions using animal/human model (Predotar_output_modelANIMAL.TXT)
- Predotar predictions using plant model (Predotar_output_modelPLANT.TXT)
Genome based results
Summary
- Gram negative: YES (FDR = 0.5 %)
- Functional Type III secretion system: NO (FDR = 12.5 %)
- Functional Type IV secretion system: NO (FDR = 7.2 %)
- Functional Type VI secretion system: NO (FDR = 7.7 %)
Individual results for each secretion system
- List of 100 most important COGs/NOGs for prediction of functional Type III secretion system (T3_top100_COGS.xls)
- List of 100 most important COGs/NOGs for prediction of functional Type IV secretion system (T4_top100_COGS.xls)
- List of 100 most important COGs/NOGs for prediction of functional Type VI secretion system (T6_top100_COGS.xls)
- List of COGs assigned to Type III secretion system in KEGG (T3SS_KEGG_cmp.xls)
- List of COGs assigned to Type IV secretion system in KEGG (T4SS_KEGG_cmp.xls)
- List of COGs assigned to Type VI secretion system in KEGG (T6SS_KEGG_cmp.xls)
Parameters:
==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================
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