Genomes encoding eukaryotic-like proteins

PF08011 PD-(D/E)XK nuclease superfamily

Copy number in non-pathogens:
Mean=0.13 Stddev=1.07

Genomes significantly enriched in this eukaryotic-like domain (ELD; score >= 4):

Genome Class* ELD score Number of proteins containing this domain
Bacteroides salyersiae WAL 10018 = DSM 18765 = JCM 12988 s 10 11
Bacteroides barnesiae DSM 18169 = JCM 13652 s 9 10
Roseburia inulinivorans s 11 12
[Eubacterium] rectale s 4 5
Roseburia faecis s 5 6
Bacteroides fragilis 638R s 5 6
Bacteroides xylanisolvens SD CC 1b s 24 26
Bacteroides xylanisolvens SD CC 2a s 24 26
Bacteroides thetaiotaomicron s 6 7
Parabacteroides distasonis s 9 10
Bacteroides thetaiotaomicron s 6 7
Parabacteroides distasonis s 9 10
Anaerostipes hadrus s 4 5
Roseburia inulinivorans s 17 19
Blautia obeum s 5 6
[Eubacterium] rectale s 11 12
Roseburia faecis s 10 11
Anaerostipes hadrus s 6 7
Parabacteroides distasonis s 11 12
Bacteroides thetaiotaomicron s 8 9
Roseburia inulinivorans s 11 13
Bacteroides vulgatus s 6 7
[Clostridium] innocuum s 11 12
Anaerostipes hadrus s 9 10
Blautia obeum s 6 7
[Eubacterium] rectale s 7 8
Bacteroides vulgatus s 6 7
Bacteroides thetaiotaomicron s 5 6
Parabacteroides distasonis s 10 11
Anaerostipes hadrus s 9 10
Bacteroides ovatus s 11 13
Bacteroides vulgatus s 7 8
Bacteroides thetaiotaomicron s 5 6
Parabacteroides distasonis s 8 9
Blautia obeum s 6 7
Anaerostipes hadrus s 9 10
[Eubacterium] rectale s 10 11
Bacteroides intestinalis DSM 17393 s 7 8
Marvinbryantia formatexigens DSM 14469 s 22 24
Leptotrichia buccalis C-1013-b s 4 5
Bacteroides xylanisolvens SD CC 1b s 22 24
Bacteroides vulgatus PC510 s 6 7
Bacteroides xylanisolvens SD CC 2a s 21 23
Bacteroides ovatus SD CMC 3f s 17 19
Bacteroides cellulosilyticus DSM 14838 s 11 12
Bacteroides finegoldii DSM 17565 s 5 6
Holdemanella biformis DSM 3989 s 5 6
Leptotrichia hofstadii F0254 s 4 5
Prevotella copri DSM 18205 s 15 17
Roseburia inulinivorans DSM 16841 s 11 12
Bacteroides sp. 3_1_13 s 26 29
Parabacteroides sp. D26 s 10 11
Clostridium sp. HGF2 s 11 13
Bacteroides helcogenes P 36-108 s 5 6
Succinatimonas hippei YIT 12066 s 6 7
Bacteroides ovatus ATCC 8483 s 18 20
Clostridium sp. SS2/1 s 11 12
Fusobacterium nucleatum 13_3C s 5 6
Bacteroides salanitronis DSM 18170 s 12 14
Fusobacterium necrophorum subsp. funduliforme ATCC 51357 s 4 5
Lachnospiraceae bacterium A4 s 33 36
Lachnospiraceae bacterium M18-1 s 12 14
Lachnospiraceae bacterium A2 s 7 8
Eubacterium plexicaudatum ASF492 s 18 20
Clostridium sp. ASF502 s 32 35
Parabacteroides sp. ASF519 s 15 17
Bacteroides fragilis str. J-143-4 s 7 8
Bacteroides fragilis str. DS-208 s 4 5
Bacteroides fragilis str. DS-166 s 4 5
Bacteroides fragilis str. 20793-3 s 10 11
Bacteroides fragilis str. S23 R14 s 10 11
Bacteroides fragilis str. 3397 T14 s 5 6
Bacteroides fragilis str. 3397 N2 s 5 6
Bacteroides fragilis str. 2-F-2 #5 s 6 7
Bacteroides fragilis str. 3397 N3 s 5 6
Bacteroides fragilis str. 3986 T(B)9 s 4 5
Bacteroides fragilis str. 3986T(B)10 s 4 5
Bacteroides fragilis str. 3988T(B)14 s 4 5
Bacteroides fragilis str. S6L3 s 4 5
Bacteroides fragilis str. S6L8 s 4 5
Bacteroides fragilis str. S6R5 s 4 5
Bacteroides fragilis str. S36L11 s 4 5
Bacteroides fragilis str. S23L24 s 5 6
Bacteroides fragilis str. 3-F-2 #6 s 4 5
Bacteroides fragilis str. 34-F-2 #13 s 6 7
Bacteroides fragilis str. S36L12 s 4 5
Treponema pedis str. T M1 s 11 12
Treponema pedis str. B 683 s 12 14
Treponema pedis isoE1186 s 12 14
Treponema pedis isoM1220 s 13 15
Treponema pedis isoM1224 s 14 16
Anaerostipes hadrus DSM 3319 s 6 7
Clostridium sp. KLE 1755 s 7 8
Leptotrichia sp. oral taxon 879 str. F0557 s 6 7
Leptotrichia wadei F0279 s 8 9
Bacteroides cellulosilyticus WH2 s 10 11
Leptotrichia wadei DSM 19758 s 8 9
Leucothrix mucor DSM 2157 s 7 8
Leptotrichia hofstadii DSM 21651 s 10 11
Blautia wexlerae DSM 19850 s 10 11
Anaerobiospirillum succiniciproducens DSM 6400 s 4 5
Parabacteroides gordonii DSM 23371 s 11 13
Succinimonas amylolytica DSM 2873 s 26 29
Bacteroides barnesiae DSM 18169 = JCM 13652 s 11 13
Leptotrichia trevisanii DSM 22070 s 9 10
Fusobacterium gonidiaformans ATCC 25563 s 5 6
Fusobacterium mortiferum ATCC 9817 s 8 9
Bacteroides sp. 1_1_6 s 11 13
Parabacteroides sp. 2_1_7 s 7 8
Bacteroides sp. 2_2_4 s 13 15
Bacteroides sp. 4_3_47FAA s 8 9
Bacteroides sp. D1 s 23 25
Bacteroides sp. D2 s 13 15
Bacteroides dorei 5_1_36/D4 s 4 5
Fusobacterium periodonticum 1_1_41FAA s 4 5
Fusobacterium periodonticum 2_1_31 s 4 5
Fusobacterium nucleatum subsp. animalis 21_1A s 11 13
Fusobacterium gonidiaformans 3-1-5R s 6 7
Fusobacterium nucleatum subsp. animalis D11 s 6 7
Ruminococcus sp. 5_1_39BFAA s 8 9
Bacteroides sp. 2_1_16 s 4 5
Bacteroides sp. 2_1_22 s 20 22
Bacteroides sp. 2_1_33B s 9 10
Bacteroides sp. 3_1_33FAA s 4 5
Parabacteroides sp. D13 s 5 6
Fusobacterium nucleatum subsp. animalis 3_1_33 s 11 12
Parabacteroides sp. 20_3 s 12 14
Bacteroides sp. 3_1_23 s 17 19
Bacteroides sp. 3_1_40A s 8 9
Erysipelotrichaceae bacterium 21_3 s 11 12
Erysipelotrichaceae bacterium 3_1_53 s 12 14
Erysipelotrichaceae bacterium 6_1_45 s 11 13
Lachnospiraceae bacterium 5_1_63FAA s 7 8
Bacteroides ovatus 3_8_47FAA s 11 12
Bacteroides sp. 3_1_19 s 5 6
Bacteroides sp. D22 s 23 25
Bacteroides sp. 1_1_30 s 23 25
Erysipelotrichaceae bacterium 2_2_44A s 8 9
Fusobacterium nucleatum subsp. polymorphum F0401 s 14 16
Bacteroides oleiciplenus YIT 12058 s 6 7
Bacteroides cellulosilyticus CL02T12C19 s 10 11
Bacteroides dorei CL02T00C15 s 4 5
Bacteroides dorei CL02T12C06 s 4 5
Bacteroides fragilis CL07T00C01 s 4 5
Bacteroides fragilis CL07T12C05 s 5 6
Bacteroides ovatus CL02T12C04 s 20 22
Bacteroides ovatus CL03T12C18 s 13 15
Bacteroides salyersiae CL02T12C01 s 10 11
Bacteroides uniformis CL03T00C23 s 5 6
Bacteroides uniformis CL03T12C37 s 5 6
Bacteroides vulgatus CL09T03C04 s 9 10
Bacteroides xylanisolvens CL03T12C04 s 25 27
Fusobacterium nucleatum subsp. animalis F0419 s 10 11
Parabacteroides distasonis CL03T12C09 s 7 8
Parabacteroides distasonis CL09T03C24 s 12 14
Parabacteroides goldsteinii CL02T12C30 s 16 18
Fusobacterium nucleatum subsp. polymorphum ATCC 10953 s 10 11
Fusobacterium nucleatum subsp. animalis ChDC F324 s 11 12
Succinivibrionaceae bacterium WG-1 s 8 9
Ruminococcus flavefaciens FD-1 s 6 7
Parabacteroides sp. D25 s 7 8
Fusobacterium nucleatum subsp. animalis 11_3_2 s 13 15
Treponema denticola SP33 s 11 13
[Clostridium] innocuum 2959 s 8 9
Treponema denticola SP32 s 11 13
Fusobacterium nucleatum subsp. animalis F0419 s 11 13
Bacteroides salyersiae WAL 10018 = DSM 18765 = JCM 12988 s 11 12
Treponema vincentii F0403 s 5 6
Treponema medium ATCC 700293 s 6 7
Fusobacterium nucleatum CTI-5 s 4 5
Fusobacterium nucleatum CTI-3 s 10 11
Fusobacterium nucleatum CTI-1 s 12 14
[Eubacterium rectale] ATCC 33656 s 12 14
Fusobacterium nucleatum subsp. animalis 4_8 s 9 10
Bacteroides vulgatus ATCC 8482 s 7 8
Parabacteroides distasonis ATCC 8503 s 4 5
Fusobacterium sp. CM1 s 6 7
Fusobacterium sp. OBRC1 s 5 6
Anaerostipes hadrus s 9 10
[Clostridium] saccharogumia DSM 17460 s 10 11
Ruminococcus sp. HUN007 s 30 33
Succinivibrio dextrinosolvens DSM 3072 s 6 7
Butyrivibrio fibrisolvens DSM 3071 s 5 6
Fusobacterium necrophorum BL s 7 8
Fusobacterium necrophorum DJ-2 s 7 8
Fusobacterium necrophorum DJ-1 s 7 8
Fusobacterium necrophorum BFTR-2 s 6 7
Fusobacterium necrophorum DAB s 7 8
Fusobacterium necrophorum BFTR-1 s 9 10
Oribacterium sp. FC2011 s 7 8
Lachnospiraceae bacterium MC2017 s 8 9
Selenomonas ruminantium AB3002 s 11 13
Blautia schinkii DSM 10518 s 19 21
Bacteroides thetaiotaomicron s 4 5
[Clostridium] innocuum s 10 11
Bacteroides thetaiotaomicron s 7 8
Anaerostipes hadrus s 5 6
Parabacteroides sp. HGS0025 s 10 11
Parabacteroides gordonii MS-1 s 11 13
Parabacteroides goldsteinii DSM 19448 = WAL 12034 s 17 19
Bacteroides ovatus s 19 21
Bacteroides fragilis s 5 6
Fusobacterium nucleatum s 4 5
Bacteroides ovatus s 18 20
Bacteroides thetaiotaomicron s 11 13
[Clostridium] innocuum s 11 13
Bacteroides caecimuris s 18 20
Bacteroides ovatus s 16 18
Bacteroides vulgatus s 6 7
Clostridium butyricum s 4 5
Clostridium butyricum s 4 5
Bacteroides thetaiotaomicron s 9 10
Bacteroides vulgatus s 7 8
Bacteroides xylanisolvens s 21 23
Clostridium butyricum s 4 5
Bacteroides caecimuris s 18 20
Erysipelotrichaceae bacterium I46 s 11 13
Bacteroides ovatus s 16 18
Bacteroides ovatus s 12 14
Bacteroides xylanisolvens s 23 25
[Clostridium] innocuum s 11 13
Bacteroides fragilis s 5 6
Bacteroides ovatus s 18 20
Eisenbergiella tayi s 4 5
Eisenbergiella tayi s 7 8
Eisenbergiella tayi s 5 6
Eisenbergiella tayi s 6 7
Eisenbergiella tayi s 7 8
Eisenbergiella tayi s 7 8
Eisenbergiella tayi s 7 8
Bacteroides fragilis s 4 5
Bacteroides thetaiotaomicron s 11 13
Eisenbergiella tayi s 4 5
Lachnospiraceae bacterium s 4 5
Bacteroides xylanisolvens s 25 28
Bacteroides xylanisolvens s 22 24
Bacteroides dorei s 5 6
Bacteroides ovatus s 13 15
Parabacteroides distasonis s 7 8
Bacteroides dorei s 4 5
Bacteroides thetaiotaomicron VPI-5482 s 11 12

*p=pathogen;s=symbiont