Metamenu

Genomes encoding eukaryotic-like proteins

PF13306 Leucine rich repeats (6 copies)

Copy number in non-pathogens:
Mean=0.23 Stddev=1.89

Genomes significantly enriched in this eukaryotic-like domain (ELD; score >= 4):

Genome Class* ELD score Number of proteins containing this domain
Prevotella falsenii DSM 22864 = JCM 15124 s 8 16
Prevotella micans DSM 21469 = JCM 16134 s 6 13
Prevotella marshii DSM 16973 = JCM 13450 s 5 11
Prevotella aurantiaca JCM 15754 s 6 12
Prevotella nanceiensis DSM 19126 = JCM 15639 s 4 9
Prevotella corporis DSM 18810 = JCM 8529 s 4 8
Ruminococcus champanellensis 18P13 = JCM 17042 s 10 20
Porphyromonadaceae bacterium H1 s 4 8
Ruminococcus sp. JC304 s 4 8
Ruminococcus champanellensis 18P13 = JCM 17042 s 6 13
Treponema phagedenis s 6 13
[Eubacterium] hallii s 7 14
Anaerostipes hadrus s 4 8
Anaerostipes hadrus s 4 8
Blautia obeum s 4 8
Blautia massiliensis s 5 10
Capnocytophaga sputigena ATCC 33612 s 5 10
Capnocytophaga ochracea DSM 7271 s 6 12
Capnocytophaga gingivalis ATCC 33624 s 5 11
Porphyromonas endodontalis ATCC 35406 s 7 15
Bacteroides cellulosilyticus DSM 14838 s 4 8
[Clostridium] hylemonae DSM 15053 s 4 9
Prevotella copri DSM 18205 s 5 10
Alloprevotella tannerae ATCC 51259 s 6 13
Ruminococcus albus 7 = DSM 20455 s 16 31
Prevotella disiens FB035-09AN s 5 11
Porphyromonas asaccharolytica PR426713P-I s 6 12
Prevotella marshii DSM 16973 = JCM 13450 s 7 14
Capnocytophaga sp. oral taxon 329 str. F0087 s 6 13
Paraprevotella clara YIT 11840 s 5 11
Paraprevotella xylaniphila YIT 11841 s 5 10
Treponema phagedenis F0421 s 4 8
Capnocytophaga ochracea F0287 s 6 13
Prevotella sp. oral taxon 472 str. F0295 s 4 8
Prevotella multiformis DSM 16608 s 5 11
Prevotella nigrescens ATCC 33563 s 5 11
Prevotella pallens ATCC 700821 s 8 17
Clostridium sp. SS2/1 s 4 8
[Eubacterium] siraeum DSM 15702 s 4 8
Eubacterium ventriosum ATCC 27560 s 6 13
Ruminococcus callidus ATCC 27760 s 13 26
Porphyromonas asaccharolytica DSM 20707 s 6 12
Capnocytophaga ochracea str. Holt 25 s 6 13
Capnocytophaga sp. oral taxon 335 str. F0486 s 6 12
Capnocytophaga sp. oral taxon 412 str. F0487 s 6 13
Treponema socranskii subsp. socranskii VPI DR56BR1116 = ATCC 35536 s 9 18
Treponema sp. JC4 s 5 11
Prevotella nigrescens CC14M s 7 15
Lachnospiraceae bacterium A4 s 6 13
Lachnospiraceae bacterium A2 s 5 11
Eubacterium plexicaudatum ASF492 s 6 13
Treponema phagedenis 4A s 7 15
Prevotella nanceiensis DSM 19126 = JCM 15639 s 4 9
Treponema saccharophilum DSM 2985 s 24 46
Clostridium sp. L2-50 s 5 10
Anaerofustis stercorihominis DSM 17244 s 7 15
Treponema socranskii subsp. socranskii VPI DR56BR1116 = ATCC 35536 s 8 16
[Eubacterium] hallii DSM 3353 s 4 8
Ruminococcus albus 8 s 10 20
Prevotella saccharolytica F0055 s 4 9
Capnocytophaga sp. oral taxon 326 str. F0382 s 5 11
Capnocytophaga sp. oral taxon 324 str. F0483 s 6 12
Prevotella disiens JCM 6334 = ATCC 29426 s 4 9
Capnocytophaga sp. oral taxon 332 str. F0381 s 6 12
Anaerostipes hadrus DSM 3319 s 4 8
Prevotella sp. F0091 s 4 8
Capnocytophaga sp. oral taxon 380 str. F0488 s 6 12
Prevotella intermedia ATCC 25611 = DSM 20706 s 5 11
Porphyromonas uenonis DSM 23387 = JCM 13868 s 4 9
[Eubacterium] siraeum DSM 15702 s 4 8
Prevotella loescheii DSM 19665 = JCM 12249 = ATCC 15930 s 5 10
Brachyspira hyodysenteriae ATCC 27164 s 4 8
Prevotella micans DSM 21469 = JCM 16134 s 8 16
Ruminococcus sp. 5_1_39BFAA s 4 8
Alloprevotella rava F0323 s 5 10
Bacteroidetes oral taxon 274 str. F0058 s 4 8
Prevotella sp. C561 s 4 8
Hungatella hathewayi WAL-18680 s 4 8
Odoribacter laneus YIT 12061 s 4 8
Prevotella micans F0438 s 8 16
Bacteroides nordii CL02T12C05 s 4 9
Bacteroides salyersiae CL02T12C01 s 5 10
Bacteroides faecis MAJ27 s 4 8
Ruminococcus flavefaciens FD-1 s 27 52
Prevotella intermedia ATCC 25611 = DSM 20706 s 5 11
Ruminococcus flavefaciens ATCC 19208 s 16 31
Eubacterium xylanophilum ATCC 35991 s 19 37
Ruminococcus albus AD2013 s 24 46
Ruminococcus flavefaciens AE3010 s 15 30
Prevotella sp. oral taxon 317 str. F0108 s 4 9
Lachnospiraceae oral taxon 107 str. F0167 s 8 16
Prevotella nigrescens F0103 s 7 14
Barnesiella intestinihominis YIT 11860 s 5 11
Treponema denticola ATCC 33521 s 5 10
Treponema denticola ATCC 35404 s 5 11
Treponema denticola OTK s 4 9
Bacteroides sp. HPS0048 s 10 20
Capnocytophaga sp. oral taxon 336 str. F0502 s 5 10
Treponema vincentii F0403 s 4 9
Treponema socranskii subsp. paredis ATCC 35535 s 4 9
Treponema medium ATCC 700293 s 4 9
Bacteroides stercoris CC31F s 4 8
Lachnoanaerobaculum sp. MSX33 s 4 8
Brachyspira pilosicoli P43/6/78 s 4 8
Brachyspira hyodysenteriae WA1 s 4 8
Brachyspira pilosicoli 95/1000 s 4 9
Treponema primitia ZAS-2 s 5 11
Treponema azotonutricium ZAS-9 s 4 9
Brachyspira intermedia PWS/A s 4 9
Mycoplasma hyosynoviae s 7 14
Mycoplasma hyosynoviae s 4 9
Mycoplasma hyosynoviae s 5 11
Mycoplasma hyosynoviae s 5 10
Mycoplasma hyosynoviae s 4 9
Mycoplasma hyosynoviae s 4 8
Mycoplasma hyosynoviae s 5 10
Ruminococcus sp. NK3A76 s 10 20
Prevotella sp. HUN102 s 5 11
Ruminococcus albus 7 = DSM 20455 s 16 31
Butyrivibrio proteoclasticus FD2007 s 4 8
[Eubacterium] cellulosolvens LD2006 s 6 13
Butyrivibrio sp. MC2021 s 12 24
Prevotella brevis ATCC 19188 s 6 12
Ruminococcus sp. HUN007 s 14 27
Lachnospiraceae bacterium MA2020 s 6 13
Eubacterium uniforme s 31 60
Prevotella ruminicola s 4 8
Butyrivibrio fibrisolvens DSM 3071 s 4 9
Flavobacterium psychrophilum DSM 3660 s 4 8
Barnesiella viscericola DSM 18177 s 4 9
Flavobacterium psychrophilum s 9 19
Prevotella loescheii DSM 19665 = JCM 12249 = ATCC 15930 s 5 10
Erysipelotrichaceae bacterium NK3D112 s 4 8
Lachnospiraceae bacterium MC2017 s 5 11
Butyrivibrio sp. AE2032 s 17 34
Blautia schinkii DSM 10518 s 5 11
Butyrivibrio sp. AE3004 s 10 20
Ruminococcus flavefaciens s 15 30
Ruminococcus flavefaciens s 12 24
Ruminococcus flavefaciens s 19 38
Flavobacterium psychrophilum s 4 8
Flavobacterium psychrophilum s 4 9
Flavobacterium psychrophilum s 5 10
Flavobacterium psychrophilum s 4 9
Flavobacterium psychrophilum s 4 8
Ruminococcus flavefaciens 007c s 18 36
Flavobacterium psychrophilum s 4 8
Flavobacterium psychrophilum s 6 13
Flavobacterium psychrophilum s 6 13
Flavobacterium psychrophilum s 7 14
Capnocytophaga ochracea s 7 14
Eubacterium limosum s 5 11
Flavobacterium psychrophilum FPG101 s 5 11
Anaerostipes hadrus s 4 9
Clostridium perfringens s 10 21
Prevotella intermedia s 6 12
Lachnoanaerobaculum saburreum s 4 9
Flavobacterium psychrophilum s 5 11
Flavobacterium psychrophilum s 7 14
Flavobacterium psychrophilum s 7 14
Capnocytophaga haemolytica s 6 12
Treponema bryantii s 5 10
Ruminococcus flavefaciens s 27 52
Ruminococcus flavefaciens s 17 34
Prevotella intermedia ATCC 25611 = DSM 20706 s 6 12
Parabacteroides sp. YL27 s 4 9
Brachyspira hyodysenteriae ATCC 27164 s 4 8
Brachyspira hampsonii s 4 9
Prevotella ruminicola s 4 9
Capnocytophaga haemolytica s 6 12
Bacteroides faecis MAJ27 s 4 8
Flavobacterium psychrophilum s 4 9
Flavobacterium psychrophilum s 6 12
Flavobacterium psychrophilum s 5 10
Flavobacterium psychrophilum s 6 13
Flavobacterium psychrophilum s 4 9
Lachnospiraceae bacterium s 4 8
Clostridiales bacterium s 8 16
Prevotella intermedia s 5 11
Treponema denticola ATCC 35405 s 5 11
Flavobacterium psychrophilum JIP02/86 s 7 15

*p=pathogen;s=symbiont