Effective results for Roseibium sp. TrichSKD4 (eggnog40)
Summary
Number of putative secreted proteins: 411
- Predicted by T4SEpre: 155
- Predicted by EffectiveELD: 41 eukaryotic-like domains, contained in 298 proteins (149 high, 149 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): Type IV
Protein based results
Putative secreted proteins (weak evidence indicated by parentheses)
| Protein | EffectiveT3 | EffectiveCCBD | T4SEpre | EffectiveELD | Predotar |
|---|---|---|---|---|---|
| 744980.TRICHSKD4_5284 | PF01609 PF05598 | (ER) | |||
| 744980.TRICHSKD4_5800 | (PF02796) (PF00665) | mitochondrial | |||
| 744980.TRICHSKD4_2910 | PF01609 PF05598 | (ER) | |||
| 744980.TRICHSKD4_3091 | PF01609 PF05598 | (ER) | |||
| 744980.TRICHSKD4_1778 | PF01609 PF05598 | (ER) | |||
| 744980.TRICHSKD4_5842 | PF01609 PF05598 | (ER) | |||
| 744980.TRICHSKD4_0426 | PF01609 PF05598 | (ER) | |||
| 744980.TRICHSKD4_3668 | PF01609 PF05598 | (ER) | |||
| 744980.TRICHSKD4_2325 | PF01609 PF05598 | (ER) | |||
| 744980.TRICHSKD4_2181 | PF01609 PF05598 | (ER) | |||
| 744980.TRICHSKD4_0639 | + | PF05598 | (ER) | ||
| 744980.TRICHSKD4_0481 | PF01609 PF05598 | (ER) | |||
| 744980.TRICHSKD4_5963 | PF01609 PF05598 | (ER) | |||
| 744980.TRICHSKD4_5074 | PF01609 PF05598 | (ER) | |||
| 744980.TRICHSKD4_1977 | PF01609 PF05598 | (ER) | |||
| 744980.TRICHSKD4_5908 | PF01609 PF05598 | (ER) | |||
| 744980.TRICHSKD4_3971 | PF01609 PF05598 | (ER) | |||
| 744980.TRICHSKD4_2592 | PF01609 PF05598 | (ER) | |||
| 744980.TRICHSKD4_0329 | PF01609 PF05598 | (ER) | |||
| 744980.TRICHSKD4_1491 | PF01609 PF05598 | (ER) | |||
| 744980.TRICHSKD4_3897 | PF01609 PF05598 | (ER) | |||
| 744980.TRICHSKD4_2728 | PF01609 PF05598 | (ER) | |||
| 744980.TRICHSKD4_3912 | PF01609 PF05598 | (ER) | |||
| 744980.TRICHSKD4_3477 | PF01609 PF05598 | (ER) | |||
| 744980.TRICHSKD4_2982 | PF01609 PF05598 | (ER) | |||
| 744980.TRICHSKD4_2669 | PF01609 PF05598 | (ER) | |||
| 744980.TRICHSKD4_5101 | PF01609 PF05598 | (ER) | |||
| 744980.TRICHSKD4_4681 | PF01609 PF05598 | (ER) | |||
| 744980.TRICHSKD4_4684 | PF01609 PF05598 | (ER) | |||
| 744980.TRICHSKD4_0034 | PF01609 PF05598 | (ER) | |||
| 744980.TRICHSKD4_0794 | PF01609 PF05598 | (ER) | |||
| 744980.TRICHSKD4_3186 | + | (PF10517) | ER | ||
| 744980.TRICHSKD4_4496 | PF01609 PF05598 | (ER) | |||
| 744980.TRICHSKD4_4136 | PF01609 PF05598 | (ER) | |||
| 744980.TRICHSKD4_1262 | PF01609 PF05598 | (ER) | |||
| 744980.TRICHSKD4_5289 | (PF01471) | ER | |||
| 744980.TRICHSKD4_5802 | (PF01695) | ER; (ER) | |||
| 744980.TRICHSKD4_5325 | (PF01471) | mitochondrial; (mitochondrial) | |||
| 744980.TRICHSKD4_2571 | PF13551 PF13592 | plastid | |||
| 744980.TRICHSKD4_3773 | PF13551 PF13592 | plastid | |||
| 744980.TRICHSKD4_1324 | PF13551 PF13592 | plastid | |||
| 744980.TRICHSKD4_6304 | + | (mitochondrial); (plastid) | |||
| 744980.TRICHSKD4_1300 | (PF01695) | ER; (ER) | |||
| 744980.TRICHSKD4_0001 | PF05598 | (ER) | |||
| 744980.TRICHSKD4_0009 | (PF03432) | (ER) | |||
| 744980.TRICHSKD4_3666 | PF05598 | (ER) | |||
| 744980.TRICHSKD4_2323 | (PF01695) | ER; (ER) | |||
| 744980.TRICHSKD4_4050 | (PF05990) | ER | |||
| 744980.TRICHSKD4_0638 | PF01609 | mitochondrial | |||
| 744980.TRICHSKD4_0755 | + | ER | |||
| 744980.TRICHSKD4_3817 | (PF05990) | ER | |||
| 744980.TRICHSKD4_0735 | (PF06455) | ER | |||
| 744980.TRICHSKD4_5968 | PF05598 | (ER) | |||
| 744980.TRICHSKD4_1100 | + | PF13683 | (mitochondrial) | ||
| 744980.TRICHSKD4_5900 | + | (mitochondrial) | |||
| 744980.TRICHSKD4_0082 | + | ER | |||
| 744980.TRICHSKD4_4501 | (PF01695) | ER; (ER) | |||
| 744980.TRICHSKD4_1920 | (PF01695) | ER; (ER) | |||
| 744980.TRICHSKD4_6060 | (PF00665) | mitochondrial | |||
| 744980.TRICHSKD4_6061 | (PF01695) | ER; (ER) | |||
| 744980.TRICHSKD4_4788 | PF13551 PF13592 | plastid | |||
| 744980.TRICHSKD4_1790 | PF13551 PF13592 | plastid | |||
| 744980.TRICHSKD4_0156 | PF13551 PF13592 | plastid | |||
| 744980.TRICHSKD4_0153 | PF05598 | (ER) | |||
| 744980.TRICHSKD4_4896 | (PF01695) | ER; (ER) | |||
| 744980.TRICHSKD4_0306 | + | ER | |||
| 744980.TRICHSKD4_5477 | (PF13833) | ER | |||
| 744980.TRICHSKD4_4484 | + | ER | |||
| 744980.TRICHSKD4_5045 | + | ER | |||
| 744980.TRICHSKD4_4296 | + | ER | |||
| 744980.TRICHSKD4_5147 | + | (ER); (mitochondrial) | |||
| 744980.TRICHSKD4_5980 | (PF00665) | (mitochondrial) | |||
| 744980.TRICHSKD4_6184 | PF01609 | (mitochondrial) | |||
| 744980.TRICHSKD4_3113 | + | ER | |||
| 744980.TRICHSKD4_6168 | (PF00565) | (ER) | |||
| 744980.TRICHSKD4_0135 | + | ER | |||
| 744980.TRICHSKD4_6140 | (PF01695) | ER; (ER) | |||
| 744980.TRICHSKD4_4429 | (PF05992) | (ER); ER | |||
| 744980.TRICHSKD4_1601 | (PF01695) | ER; (ER) | |||
| 744980.TRICHSKD4_1604 | PF13551 PF13592 (PF00665) | ||||
| 744980.TRICHSKD4_6124 | + | ER | |||
| 744980.TRICHSKD4_4408 | + | ER | |||
| 744980.TRICHSKD4_5336 | (PF02882) | (mitochondrial) | |||
| 744980.TRICHSKD4_2565 | + | ER | |||
| 744980.TRICHSKD4_4211 | PF13551 PF13592 | plastid | |||
| 744980.TRICHSKD4_2902 | + | ER | |||
| 744980.TRICHSKD4_1334 | PF03050 | (mitochondrial) | |||
| 744980.TRICHSKD4_0190 | + | (mitochondrial); mitochondrial | |||
| 744980.TRICHSKD4_0194 | (PF00839) | ER | |||
| 744980.TRICHSKD4_0207 | + | ER | |||
| 744980.TRICHSKD4_1997 | (PF00839) | ER | |||
| 744980.TRICHSKD4_1210 | + | ER | |||
| 744980.TRICHSKD4_1740 | + | mitochondrial | |||
| 744980.TRICHSKD4_5527 | PF13551 PF13592 | plastid | |||
| 744980.TRICHSKD4_5540 | + | ER | |||
| 744980.TRICHSKD4_6017 | (PF00565) | ER | |||
| 744980.TRICHSKD4_6018 | (PF00565) | ER | |||
| 744980.TRICHSKD4_3007 | PF13683 | (mitochondrial); mitochondrial | |||
| 744980.TRICHSKD4_6167 | + | ER | |||
| 744980.TRICHSKD4_5399 | (PF01471) | ER | |||
| 744980.TRICHSKD4_5976 | (PF02796) | (mitochondrial) | |||
| 744980.TRICHSKD4_5979 | (PF13276) | mitochondrial | |||
| 744980.TRICHSKD4_1895 | PF13551 PF13592 | plastid | |||
| 744980.TRICHSKD4_2276 | (PF10979) | mitochondrial; (mitochondrial) | |||
| 744980.TRICHSKD4_6036 | PF13551 PF13592 | plastid | |||
| 744980.TRICHSKD4_4779 | (PF13833) | ER | |||
| 744980.TRICHSKD4_0642 | PF13551 PF13592 | plastid | |||
| 744980.TRICHSKD4_1110 | + | (mitochondrial) | |||
| 744980.TRICHSKD4_2034 | (PF10517) | ER | |||
| 744980.TRICHSKD4_5765 | + | ER | |||
| 744980.TRICHSKD4_3189 | + | (mitochondrial) | |||
| 744980.TRICHSKD4_0518 | (PF01695) | ER; (ER) | |||
| 744980.TRICHSKD4_0519 | (PF00665) | mitochondrial | |||
| 744980.TRICHSKD4_6074 | + | (ER) | |||
| 744980.TRICHSKD4_0680 | + | ER | |||
| 744980.TRICHSKD4_3307 | + | ER | |||
| 744980.TRICHSKD4_3350 | (PF00959) | ER | |||
| 744980.TRICHSKD4_3941 | + | mitochondrial | |||
| 744980.TRICHSKD4_6098 | + | (mitochondrial) | |||
| 744980.TRICHSKD4_0169 | (PF01471) | (mitochondrial); (ER) | |||
| 744980.TRICHSKD4_0557 | PF01609 | (mitochondrial) | |||
| 744980.TRICHSKD4_0558 | PF13551 PF13592 | plastid | |||
| 744980.TRICHSKD4_0559 | PF05598 | (ER) | |||
| 744980.TRICHSKD4_3920 | + | (mitochondrial) | |||
| 744980.TRICHSKD4_4118 | (PF01471) | ER | |||
| 744980.TRICHSKD4_5191 | (PF01695) | ER; (ER) | |||
| 744980.TRICHSKD4_1226 | + | ER | |||
| 744980.TRICHSKD4_2677 | + | ER | |||
| 744980.TRICHSKD4_2676 | + | (mitochondrial) | |||
| 744980.TRICHSKD4_4453 | + | ER | |||
| 744980.TRICHSKD4_2645 | PF13551 PF13592 | plastid | |||
| 744980.TRICHSKD4_4430 | (PF01695) | ER; (ER) | |||
| 744980.TRICHSKD4_4432 | (PF05992) | ER | |||
| 744980.TRICHSKD4_3500 | (PF00665) | (plastid) | |||
| 744980.TRICHSKD4_1611 | + | (PF03432) | |||
| 744980.TRICHSKD4_1518 | + | (mitochondrial) | |||
| 744980.TRICHSKD4_5060 | (PF13276) (PF00665) | ||||
| 744980.TRICHSKD4_0583 | + | PF13683 | |||
| 744980.TRICHSKD4_4051 | (PF05990) | (plastid) | |||
| 744980.TRICHSKD4_0611 | (PF13358) | (mitochondrial) | |||
| 744980.TRICHSKD4_2850 | + | plastid | |||
| 744980.TRICHSKD4_1088 | (PF13276) PF13683 | ||||
| 744980.TRICHSKD4_5717 | (PF13565) (PF00665) | ||||
| 744980.TRICHSKD4_5384 | (PF13565) (PF00665) | ||||
| 744980.TRICHSKD4_5965 | (PF05225) | (plastid) | |||
| 744980.TRICHSKD4_5967 | + | (PF00665) | |||
| 744980.TRICHSKD4_4740 | + | (ER) | |||
| 744980.TRICHSKD4_5905 | (PF13276) PF13683 | ||||
| 744980.TRICHSKD4_0691 | (PF13565) (PF00665) | ||||
| 744980.TRICHSKD4_5926 | + | PF13683 | |||
| 744980.TRICHSKD4_2599 | + | (ER) | |||
| 744980.TRICHSKD4_3782 | (PF13565) (PF00665) | ||||
| 744980.TRICHSKD4_3439 | (PF13276) PF13683 | ||||
| 744980.TRICHSKD4_1147 | + | (mitochondrial) | |||
| 744980.TRICHSKD4_5062 | PF13683 | (plastid) | |||
| 744980.TRICHSKD4_3495 | (PF05034) (PF07476) | ||||
| 744980.TRICHSKD4_1609 | (PF13276) PF13683 | ||||
| 744980.TRICHSKD4_0894 | (PF13276) PF13683 | ||||
| 744980.TRICHSKD4_0073 | + | (mitochondrial) | |||
| 744980.TRICHSKD4_4686 | (PF13276) PF13683 | ||||
| 744980.TRICHSKD4_3552 | (PF13565) (PF00665) | ||||
| 744980.TRICHSKD4_4233 | PF13683 | (plastid) | |||
| 744980.TRICHSKD4_4231 | (PF13276) (PF00665) | ||||
| 744980.TRICHSKD4_2960 | + | (PF00665) | |||
| 744980.TRICHSKD4_0013 | (PF13565) (PF00665) | ||||
| 744980.TRICHSKD4_4905 | (PF00959) (PF01471) | ||||
| 744980.TRICHSKD4_0600 | + | PF13683 | |||
| 744980.TRICHSKD4_0609 | + | PF13683 | |||
| 744980.TRICHSKD4_3656 | (PF13565) (PF00665) | ||||
| 744980.TRICHSKD4_5728 | (PF13565) (PF00665) | ||||
| 744980.TRICHSKD4_3008 | (PF13276) PF01527 | ||||
| 744980.TRICHSKD4_1892 | (PF13276) PF13683 | ||||
| 744980.TRICHSKD4_5708 | (PF13565) (PF00665) | ||||
| 744980.TRICHSKD4_0709 | + | (PF13565) | |||
| 744980.TRICHSKD4_1901 | (PF13565) (PF00665) | ||||
| 744980.TRICHSKD4_2037 | + | (mitochondrial) | |||
| 744980.TRICHSKD4_6078 | (PF02796) | (mitochondrial) | |||
| 744980.TRICHSKD4_3421 | PF13592 (PF13358) | ||||
| 744980.TRICHSKD4_6096 | (PF13276) (PF00665) | ||||
| 744980.TRICHSKD4_5195 | (PF00959) (PF01471) | ||||
| 744980.TRICHSKD4_4589 | + | (mitochondrial) | |||
| 744980.TRICHSKD4_4630 | (PF03432) | (mitochondrial) | |||
| 744980.TRICHSKD4_4841 | + | (PF00565) | |||
| 744980.TRICHSKD4_3527 | (PF13276) PF13683 | ||||
| 744980.TRICHSKD4_1616 | PF03050 | ||||
| 744980.TRICHSKD4_1617 | PF13683 | ||||
| 744980.TRICHSKD4_4655 | + | ||||
| 744980.TRICHSKD4_4656 | + | ||||
| 744980.TRICHSKD4_5619 | (PF01471) | ||||
| 744980.TRICHSKD4_5345 | + | ||||
| 744980.TRICHSKD4_6246 | + | ||||
| 744980.TRICHSKD4_3754 | (PF11074) | ||||
| 744980.TRICHSKD4_3757 | + | ||||
| 744980.TRICHSKD4_0065 | (PF01471) | ||||
| 744980.TRICHSKD4_6136 | (PF00665) | ||||
| 744980.TRICHSKD4_4032 | (PF01321) | ||||
| 744980.TRICHSKD4_2570 | (PF13358) | ||||
| 744980.TRICHSKD4_3774 | (PF13358) | ||||
| 744980.TRICHSKD4_3772 | PF01527 | ||||
| 744980.TRICHSKD4_5792 | (PF00665) | ||||
| 744980.TRICHSKD4_1326 | PF13683 | ||||
| 744980.TRICHSKD4_1327 | PF03050 | ||||
| 744980.TRICHSKD4_6114 | PF01527 | ||||
| 744980.TRICHSKD4_1320 | PF01609 | not used | |||
| 744980.TRICHSKD4_2366 | + | ||||
| 744980.TRICHSKD4_3545 | (PF01321) | ||||
| 744980.TRICHSKD4_5653 | (PF01321) | ||||
| 744980.TRICHSKD4_4227 | (PF03432) | ||||
| 744980.TRICHSKD4_1301 | PF01527 | ||||
| 744980.TRICHSKD4_1309 | PF13683 | not used | |||
| 744980.TRICHSKD4_1548 | + | ||||
| 744980.TRICHSKD4_2896 | + | ||||
| 744980.TRICHSKD4_0004 | PF03050 | ||||
| 744980.TRICHSKD4_3665 | PF01609 | ||||
| 744980.TRICHSKD4_2322 | (PF00665) | ||||
| 744980.TRICHSKD4_2186 | + | ||||
| 744980.TRICHSKD4_3058 | (PF14336) | ||||
| 744980.TRICHSKD4_3274 | + | ||||
| 744980.TRICHSKD4_3586 | (PF01471) | ||||
| 744980.TRICHSKD4_3580 | + | ||||
| 744980.TRICHSKD4_4056 | PF03050 | ||||
| 744980.TRICHSKD4_0617 | PF13683 | ||||
| 744980.TRICHSKD4_0616 | + | ||||
| 744980.TRICHSKD4_0610 | PF13592 | ||||
| 744980.TRICHSKD4_0613 | (PF02796) | ||||
| 744980.TRICHSKD4_2041 | (PF01847) | ||||
| 744980.TRICHSKD4_5885 | + | ||||
| 744980.TRICHSKD4_3250 | + | ||||
| 744980.TRICHSKD4_1089 | PF01527 | ||||
| 744980.TRICHSKD4_1881 | (PF00665) | ||||
| 744980.TRICHSKD4_2281 | (PF01471) | ||||
| 744980.TRICHSKD4_5718 | PF01527 | ||||
| 744980.TRICHSKD4_5710 | PF13683 | ||||
| 744980.TRICHSKD4_6007 | + | ||||
| 744980.TRICHSKD4_4895 | (PF00665) | ||||
| 744980.TRICHSKD4_4542 | + | ||||
| 744980.TRICHSKD4_5383 | PF01527 | ||||
| 744980.TRICHSKD4_5969 | PF01609 | ||||
| 744980.TRICHSKD4_2265 | (PF00665) | ||||
| 744980.TRICHSKD4_1297 | (PF00665) | ||||
| 744980.TRICHSKD4_6022 | + | ||||
| 744980.TRICHSKD4_2744 | (PF01471) | ||||
| 744980.TRICHSKD4_4569 | + | ||||
| 744980.TRICHSKD4_4567 | (PF00665) | ||||
| 744980.TRICHSKD4_4747 | PF03050 | ||||
| 744980.TRICHSKD4_0710 | (PF13358) | ||||
| 744980.TRICHSKD4_0714 | PF03050 | ||||
| 744980.TRICHSKD4_5906 | PF01527 | ||||
| 744980.TRICHSKD4_2247 | + | ||||
| 744980.TRICHSKD4_3194 | + | ||||
| 744980.TRICHSKD4_4353 | + | ||||
| 744980.TRICHSKD4_6042 | (PF13358) | ||||
| 744980.TRICHSKD4_6046 | PF01609 | not used | |||
| 744980.TRICHSKD4_2761 | + | ||||
| 744980.TRICHSKD4_4500 | (PF00665) | ||||
| 744980.TRICHSKD4_4503 | PF01527 | ||||
| 744980.TRICHSKD4_0698 | PF01527 | ||||
| 744980.TRICHSKD4_0696 | PF03050 | ||||
| 744980.TRICHSKD4_0692 | PF01527 | ||||
| 744980.TRICHSKD4_5929 | PF03050 | ||||
| 744980.TRICHSKD4_2597 | + | ||||
| 744980.TRICHSKD4_3950 | + | ||||
| 744980.TRICHSKD4_1921 | (PF00665) | ||||
| 744980.TRICHSKD4_1922 | (PF00665) | ||||
| 744980.TRICHSKD4_3783 | PF01527 | ||||
| 744980.TRICHSKD4_3438 | PF01527 | ||||
| 744980.TRICHSKD4_4789 | (PF13358) | ||||
| 744980.TRICHSKD4_1006 | (PF01471) | ||||
| 744980.TRICHSKD4_5270 | PF03050 | ||||
| 744980.TRICHSKD4_3151 | (PF11927) | ||||
| 744980.TRICHSKD4_1332 | (PF13276) | ||||
| 744980.TRICHSKD4_0157 | (PF13358) | ||||
| 744980.TRICHSKD4_5063 | PF01609 | ||||
| 744980.TRICHSKD4_3936 | + | ||||
| 744980.TRICHSKD4_5689 | (PF00162) | ||||
| 744980.TRICHSKD4_6266 | + | ||||
| 744980.TRICHSKD4_6088 | PF01527 | ||||
| 744980.TRICHSKD4_6086 | (PF00665) | ||||
| 744980.TRICHSKD4_6083 | + | ||||
| 744980.TRICHSKD4_5474 | + | ||||
| 744980.TRICHSKD4_4091 | (PF10517) | ||||
| 744980.TRICHSKD4_2627 | PF01527 | ||||
| 744980.TRICHSKD4_2625 | PF03050 | ||||
| 744980.TRICHSKD4_3682 | (PF00028) | not used | |||
| 744980.TRICHSKD4_5993 | (PF00565) | ||||
| 744980.TRICHSKD4_0174 | (PF00102) | ||||
| 744980.TRICHSKD4_2432 | (PF01471) | ||||
| 744980.TRICHSKD4_3551 | PF01527 | ||||
| 744980.TRICHSKD4_3472 | + | ||||
| 744980.TRICHSKD4_2981 | + | ||||
| 744980.TRICHSKD4_6187 | (PF00028) | ||||
| 744980.TRICHSKD4_6185 | PF03050 | ||||
| 744980.TRICHSKD4_4554 | (PF02796) | ||||
| 744980.TRICHSKD4_0457 | + | ||||
| 744980.TRICHSKD4_4601 | PF03050 | ||||
| 744980.TRICHSKD4_2455 | + | ||||
| 744980.TRICHSKD4_1430 | + | ||||
| 744980.TRICHSKD4_6166 | (PF03432) | ||||
| 744980.TRICHSKD4_2663 | + | ||||
| 744980.TRICHSKD4_1325 | (PF13358) | ||||
| 744980.TRICHSKD4_0579 | PF03050 | ||||
| 744980.TRICHSKD4_5371 | + | ||||
| 744980.TRICHSKD4_3606 | PF03050 | ||||
| 744980.TRICHSKD4_1875 | + | ||||
| 744980.TRICHSKD4_3601 | + | ||||
| 744980.TRICHSKD4_4552 | (PF01471) | ||||
| 744980.TRICHSKD4_4882 | (PF01471) | ||||
| 744980.TRICHSKD4_1608 | PF01527 | ||||
| 744980.TRICHSKD4_1603 | (PF13358) | ||||
| 744980.TRICHSKD4_0895 | PF01527 | ||||
| 744980.TRICHSKD4_4986 | + | ||||
| 744980.TRICHSKD4_6128 | + | ||||
| 744980.TRICHSKD4_5838 | PF03050 | ||||
| 744980.TRICHSKD4_4404 | (PF01442) | ||||
| 744980.TRICHSKD4_1626 | (PF01321) | ||||
| 744980.TRICHSKD4_1622 | + | ||||
| 744980.TRICHSKD4_3994 | + | ||||
| 744980.TRICHSKD4_4210 | (PF13358) | ||||
| 744980.TRICHSKD4_6104 | (PF08975) | ||||
| 744980.TRICHSKD4_1333 | PF01527 | ||||
| 744980.TRICHSKD4_5812 | + | ||||
| 744980.TRICHSKD4_4685 | PF01527 | ||||
| 744980.TRICHSKD4_0852 | + | ||||
| 744980.TRICHSKD4_3767 | (PF00665) | ||||
| 744980.TRICHSKD4_4230 | PF01527 | ||||
| 744980.TRICHSKD4_0033 | + | ||||
| 744980.TRICHSKD4_2963 | + | ||||
| 744980.TRICHSKD4_1312 | PF01527 | ||||
| 744980.TRICHSKD4_1315 | PF03050 | ||||
| 744980.TRICHSKD4_2373 | (PF03432) | ||||
| 744980.TRICHSKD4_3846 | (PF01321) | ||||
| 744980.TRICHSKD4_0012 | PF01527 | ||||
| 744980.TRICHSKD4_4256 | + | ||||
| 744980.TRICHSKD4_1763 | + | ||||
| 744980.TRICHSKD4_1760 | (PF07958) | ||||
| 744980.TRICHSKD4_1377 | + | ||||
| 744980.TRICHSKD4_2317 | (PF00565) | ||||
| 744980.TRICHSKD4_1572 | + | ||||
| 744980.TRICHSKD4_3671 | + | ||||
| 744980.TRICHSKD4_1356 | + | ||||
| 744980.TRICHSKD4_0598 | PF01527 | ||||
| 744980.TRICHSKD4_3060 | (PF00028) | ||||
| 744980.TRICHSKD4_3249 | + | ||||
| 744980.TRICHSKD4_0607 | PF01527 | ||||
| 744980.TRICHSKD4_5956 | (PF00028) | ||||
| 744980.TRICHSKD4_2294 | + | ||||
| 744980.TRICHSKD4_3655 | PF01527 | ||||
| 744980.TRICHSKD4_5729 | PF01527 | ||||
| 744980.TRICHSKD4_5890 | + | ||||
| 744980.TRICHSKD4_3005 | PF01527 | ||||
| 744980.TRICHSKD4_3004 | (PF00665) | ||||
| 744980.TRICHSKD4_2710 | (PF00665) | ||||
| 744980.TRICHSKD4_2849 | (PF01321) | ||||
| 744980.TRICHSKD4_5978 | PF01527 | ||||
| 744980.TRICHSKD4_1893 | PF01527 | ||||
| 744980.TRICHSKD4_1894 | (PF13358) | ||||
| 744980.TRICHSKD4_0501 | + | ||||
| 744980.TRICHSKD4_5704 | (PF02882) | ||||
| 744980.TRICHSKD4_5705 | (PF02882) | ||||
| 744980.TRICHSKD4_5707 | PF01527 | ||||
| 744980.TRICHSKD4_6038 | PF01609 | ||||
| 744980.TRICHSKD4_2737 | (PF10979) | ||||
| 744980.TRICHSKD4_2731 | + | ||||
| 744980.TRICHSKD4_4559 | (PF10979) | ||||
| 744980.TRICHSKD4_4886 | + | ||||
| 744980.TRICHSKD4_0643 | PF03050 | ||||
| 744980.TRICHSKD4_0641 | (PF13358) | ||||
| 744980.TRICHSKD4_0706 | PF01609 | ||||
| 744980.TRICHSKD4_0700 | (PF00959) | ||||
| 744980.TRICHSKD4_1074 | PF03050 | ||||
| 744980.TRICHSKD4_1900 | PF01527 | ||||
| 744980.TRICHSKD4_0797 | + | ||||
| 744980.TRICHSKD4_5764 | PF03050 | ||||
| 744980.TRICHSKD4_5582 | + | ||||
| 744980.TRICHSKD4_0662 | PF01609 | ||||
| 744980.TRICHSKD4_5240 | + | ||||
| 744980.TRICHSKD4_5931 | PF01527 | ||||
| 744980.TRICHSKD4_3187 | (PF00162) | ||||
| 744980.TRICHSKD4_0929 | + | ||||
| 744980.TRICHSKD4_5744 | (PF11927) | ||||
| 744980.TRICHSKD4_5482 | + | ||||
| 744980.TRICHSKD4_3308 | (PF01321) | ||||
| 744980.TRICHSKD4_5010 | + | ||||
| 744980.TRICHSKD4_6095 | PF13683 | ||||
| 744980.TRICHSKD4_0766 | PF03050 | ||||
| 744980.TRICHSKD4_0763 | PF01527 | ||||
| 744980.TRICHSKD4_3143 | + | ||||
| 744980.TRICHSKD4_1789 | (PF13358) | ||||
| 744980.TRICHSKD4_1205 | PF03050 | ||||
| 744980.TRICHSKD4_1199 | (PF01321) | ||||
| 744980.TRICHSKD4_5190 | (PF00665) | ||||
| 744980.TRICHSKD4_5999 | + | ||||
| 744980.TRICHSKD4_3122 | + | ||||
| 744980.TRICHSKD4_3120 | (PF01471) | ||||
| 744980.TRICHSKD4_0578 | PF05598 | ||||
| 744980.TRICHSKD4_5059 | PF01527 | ||||
| 744980.TRICHSKD4_3905 | + | ||||
| 744980.TRICHSKD4_3488 | (PF02796) | ||||
| 744980.TRICHSKD4_3481 | (PF10013) | not used | |||
| 744980.TRICHSKD4_2999 | (PF02796) | ||||
| 744980.TRICHSKD4_2991 | PF01527 | ||||
| 744980.TRICHSKD4_5152 | + | ||||
| 744980.TRICHSKD4_1242 | + | ||||
| 744980.TRICHSKD4_1866 | (PF01471) | ||||
| 744980.TRICHSKD4_2644 | (PF13358) | ||||
| 744980.TRICHSKD4_4154 | + | ||||
| 744980.TRICHSKD4_2123 | PF02551 | ||||
| 744980.TRICHSKD4_4431 | (PF00665) | ||||
| 744980.TRICHSKD4_3526 | PF01527 | ||||
| 744980.TRICHSKD4_1675 | + | ||||
| 744980.TRICHSKD4_1263 | PF03050 |
Detailed merged results for each protein sequence
- Detailed merged results as table (merge_results.html)
- Detailed merged results as tab delimited file (merge_results.csv)
Individual results for each protein sequence
- T4SEpre bpbAac predictions (T4SEpre_bpbAac_FinalResult.csv)
- T4SEpre psAac predictions (T4SEpre_psAac_FinalResult.csv)
- EffectiveELD predictions (PROTEINS.ELD.TXT)
- Predotar predictions using animal/human model (Predotar_output_modelANIMAL.TXT)
- Predotar predictions using plant model (Predotar_output_modelPLANT.TXT)
Genome based results
Summary
- Gram negative: YES (FDR = 0.5 %)
- Functional Type III secretion system: NO (FDR = 12.5 %)
- Functional Type IV secretion system: YES (FDR = 7.2 %)
Estimated copy number = 1.2 (12/10 KEGG proteins)
- Functional Type VI secretion system: NO (FDR = 7.7 %)
Individual results for each secretion system
- List of 100 most important COGs/NOGs for prediction of functional Type III secretion system (T3_top100_COGS.xls)
- List of 100 most important COGs/NOGs for prediction of functional Type IV secretion system (T4_top100_COGS.xls)
- List of 100 most important COGs/NOGs for prediction of functional Type VI secretion system (T6_top100_COGS.xls)
- List of COGs assigned to Type III secretion system in KEGG (T3SS_KEGG_cmp.xls)
- List of COGs assigned to Type IV secretion system in KEGG (T4SS_KEGG_cmp.xls)
- List of COGs assigned to Type VI secretion system in KEGG (T6SS_KEGG_cmp.xls)
Parameters:
==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================
Estimated copy number = 1.2 (12/10 KEGG proteins)
Release announcements
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Contact
- +43 1 4277 76681
- +43 1 4277 876681
- contact.cube@univie.ac.at
