Metamenu

Effective results for Nakamurella multipartita DSM 44233 (eggnog40)

Summary

Number of putative secreted proteins: 257
- Predicted by T4SEpre: 0
- Predicted by EffectiveELD: 36 eukaryotic-like domains, contained in 257 proteins (115 high, 142 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): None

Protein based results

Putative secreted proteins (weak evidence indicated by parentheses)

ProteinEffectiveT3EffectiveCCBDT4SEpreEffectiveELDPredotar
479431.Namu_2079PF00665(mitochondrial); mitochondrial
479431.Namu_1286(PF13401)(mitochondrial)
479431.Namu_1911(PF13401)(mitochondrial)
479431.Namu_1626(PF09851)ER
479431.Namu_3668PF00665(mitochondrial)
479431.Namu_2530PF00665(mitochondrial)
479431.Namu_0389(PF03663)ER
479431.Namu_3279(PF03663)mitochondrial
479431.Namu_3499(PF00589)mitochondrial
479431.Namu_3656PF00665(mitochondrial)
479431.Namu_2632(PF14329)(mitochondrial)
479431.Namu_1491(PF07885)ER
479431.Namu_3743(PF13401)(mitochondrial)
479431.Namu_0114(PF09851)(mitochondrial)
479431.Namu_4743(PF09851)mitochondrial
479431.Namu_4256(PF09851)mitochondrial; (mitochondrial)
479431.Namu_1984(PF10503)ER
479431.Namu_2170(PF08326)mitochondrial; (mitochondrial)
479431.Namu_2820(PF10503)mitochondrial
479431.Namu_1457PF02371(mitochondrial)
479431.Namu_4847PF00665mitochondrial
479431.Namu_4517PF00665(mitochondrial)
479431.Namu_4519(PF13401)(mitochondrial)
479431.Namu_0818(PF14329)mitochondrial; (mitochondrial)
479431.Namu_2162(PF09851)ER
479431.Namu_1150PF05007mitochondrial
479431.Namu_3555PF00665(mitochondrial); (plastid)
479431.Namu_0788PF00665(mitochondrial)
479431.Namu_0012(PF00121)mitochondrial
479431.Namu_2048(PF13401)(mitochondrial)
479431.Namu_1156PF13886ER
479431.Namu_1602PF00665(mitochondrial)
479431.Namu_4945(PF13401)(mitochondrial)
479431.Namu_2802(PF00121)(mitochondrial)
479431.Namu_0432(PF00589)(mitochondrial)
479431.Namu_1285(PF13518) PF00665
479431.Namu_1914(PF13344) (PF13242)
479431.Namu_4736(PF13344) (PF13242)
479431.Namu_3664(PF13276) PF00665
479431.Namu_3497(PF13276) PF00665
479431.Namu_2523(PF13276) PF00665
479431.Namu_2528(PF13276) PF00665
479431.Namu_1424(PF07885)(ER)
479431.Namu_3469(PF02899) (PF00589)
479431.Namu_3483(PF13276) PF00665
479431.Namu_1236(PF13276) PF00665
479431.Namu_3744(PF13518) PF00665
479431.Namu_3740(PF02899) (PF00589)
479431.Namu_1242(PF13276) PF00665
479431.Namu_0628(PF13276) PF00665
479431.Namu_0131(PF13276) PF00665
479431.Namu_3115(PF02899) (PF00589)
479431.Namu_3698(PF02899) (PF00589)
479431.Namu_3585(PF02899) (PF00589)
479431.Namu_1990(PF10503)(mitochondrial)
479431.Namu_3579(PF13518) PF00665
479431.Namu_2957(PF07885)(ER)
479431.Namu_5335PF00665(mitochondrial)
479431.Namu_1215(PF02899) (PF00589)
479431.Namu_4462(PF13276) PF00665
479431.Namu_4062(PF02899) (PF00589)
479431.Namu_0493(PF10503)(plastid)
479431.Namu_4076(PF13344) (PF13242)
479431.Namu_3204(PF01695) PF00665
479431.Namu_2446(PF13276) PF00665
479431.Namu_2219(PF14494)(mitochondrial)
479431.Namu_1224(PF13276) PF00665
479431.Namu_1220(PF13276) PF00665
479431.Namu_4520(PF13518) PF00665
479431.Namu_1960PF02371(plastid)
479431.Namu_3321(PF13344) (PF13242)
479431.Namu_3611(PF02899) (PF00589)
479431.Namu_2873(PF13276) PF00665
479431.Namu_4946(PF13518) PF00665
479431.Namu_3040PF00665(mitochondrial)
479431.Namu_3045PF00665(mitochondrial)
479431.Namu_3044(PF02899) (PF00589)
479431.Namu_2066(PF13276) PF00665
479431.Namu_3425(PF13344) (PF13242)
479431.Namu_3608(PF13276) PF00665
479431.Namu_3603(PF02899) (PF00589)
479431.Namu_3701PF00665
479431.Namu_3706(PF00589)
479431.Namu_2255PF02371
479431.Namu_2252(PF07885)
479431.Namu_1767(PF01704)
479431.Namu_1287PF02371
479431.Namu_1282PF02371
479431.Namu_0087PF02371
479431.Namu_4967(PF07885)
479431.Namu_3289PF02371
479431.Namu_3669(PF01695)
479431.Namu_3667(PF00872)
479431.Namu_1234(PF00872)
479431.Namu_2006PF02371
479431.Namu_3713PF00665
479431.Namu_2531(PF01695)
479431.Namu_1386(PF05598)
479431.Namu_4773PF00665
479431.Namu_0253(PF07885)
479431.Namu_0250(PF01014)
479431.Namu_0891PF00665
479431.Namu_3472(PF00872)
479431.Namu_3470(PF01695)
479431.Namu_4950(PF00042)
479431.Namu_3657(PF01695)
479431.Namu_3654(PF00042)
479431.Namu_2839PF02371
479431.Namu_2522(PF00589)
479431.Namu_2521(PF00589)
479431.Namu_5385PF01610
479431.Namu_5361PF00665
479431.Namu_1941(PF13242)
479431.Namu_0461PF01610
479431.Namu_3864PF02371
479431.Namu_4764PF02371
479431.Namu_1642PF00665
479431.Namu_1641(PF01695)
479431.Namu_0542PF01610
479431.Namu_3397(PF00042)
479431.Namu_0111(PF05598)
479431.Namu_3468(PF00589)
479431.Namu_3487PF00665
479431.Namu_3731(PF02589)
479431.Namu_3733PF00665
479431.Namu_3732(PF02589)
479431.Namu_3735(PF00872)
479431.Namu_5083PF02037
479431.Namu_0476(PF00589)
479431.Namu_4628(PF05063)
479431.Namu_4333(PF05598)
479431.Namu_0617PF01610
479431.Namu_0859PF00665
479431.Namu_0858PF02371
479431.Namu_3741(PF00589)
479431.Namu_2348(PF13242)
479431.Namu_1245PF01610
479431.Namu_1886PF00665
479431.Namu_3465(PF00872)
479431.Namu_4748(PF05598)
479431.Namu_0913PF08213not used
479431.Namu_4632PF01610
479431.Namu_2973PF02371
479431.Namu_2752(PF02899)
479431.Namu_1275PF02371
479431.Namu_1185PF02371
479431.Namu_1182(PF00872)
479431.Namu_1872PF02371
479431.Namu_1980(PF05598)
479431.Namu_0907PF00665
479431.Namu_0906PF01610
479431.Namu_3900(PF05598)
479431.Namu_3699(PF00589)
479431.Namu_2188(PF04525)
479431.Namu_3586(PF00589)
479431.Namu_3561(PF02589)
479431.Namu_3562(PF02589)
479431.Namu_2362PF02371
479431.Namu_2560PF00665
479431.Namu_2415(PF05495)
479431.Namu_5327PF01610
479431.Namu_1197PF02371
479431.Namu_1198PF02371
479431.Namu_4492(PF00589)
479431.Namu_4019(PF01704)
479431.Namu_2881(PF05598)
479431.Namu_2883(PF00872)
479431.Namu_2889PF01610
479431.Namu_3595PF01610
479431.Namu_2085PF02371
479431.Namu_2080(PF01695)
479431.Namu_5208PF02371
479431.Namu_1214(PF01695)
479431.Namu_1216(PF00589)
479431.Namu_1218(PF01695)
479431.Namu_1455(PF00872)
479431.Namu_1525PF02371
479431.Namu_1032(PF02589)
479431.Namu_1033(PF02589)
479431.Namu_0034PF02371
479431.Namu_4069PF01610
479431.Namu_0495(PF00042)
479431.Namu_4518(PF01695)
479431.Namu_2767(PF00589)
479431.Namu_2545PF00665
479431.Namu_2232PF02371
479431.Namu_5232PF02371
479431.Namu_5301(PF16901)
479431.Namu_0644(PF00589)
479431.Namu_3990PF02371
479431.Namu_4473PF01610
479431.Namu_4475(PF13276)
479431.Namu_1026(PF14441)
479431.Namu_4851(PF05598)
479431.Namu_4853PF00665
479431.Namu_4852PF02371
479431.Namu_0957PF02371
479431.Namu_0173(PF16952)
479431.Namu_3556(PF00872)
479431.Namu_2448(PF05598)
479431.Namu_5227(PF02589)
479431.Namu_5228(PF02589)
479431.Namu_1238(PF00589)
479431.Namu_1237(PF00589)
479431.Namu_0016(PF16901)
479431.Namu_3631PF00665
479431.Namu_1222(PF05598)
479431.Namu_1319PF02371
479431.Namu_0682PF02371
479431.Namu_1179(PF12740)
479431.Namu_1436PF01610
479431.Namu_0209(PF10503)
479431.Namu_3889(PF00872)
479431.Namu_0759PF02371
479431.Namu_3315(PF00121)
479431.Namu_3314(PF16901)
479431.Namu_3083PF00665
479431.Namu_2042PF02371
479431.Namu_2044(PF00872)
479431.Namu_2910PF01610
479431.Namu_3629(PF00872)
479431.Namu_1363(PF16901)
479431.Namu_1369(PF09851)
479431.Namu_1966PF01610
479431.Namu_1765PF01610
479431.Namu_1610(PF05598)
479431.Namu_1618(PF12740)
479431.Namu_3436(PF16901)
479431.Namu_2050(PF00872)
479431.Namu_3615(PF00589)
479431.Namu_3610(PF00589)
479431.Namu_2870(PF02899)
479431.Namu_2583PF00665
479431.Namu_5272(PF04525)
479431.Namu_4095PF01610
479431.Namu_1973(PF00589)
479431.Namu_0421(PF14329)
479431.Namu_0424(PF01695)
479431.Namu_0426(PF00872)
479431.Namu_0221PF02371
479431.Namu_4943(PF00872)
479431.Namu_3043(PF00589)
479431.Namu_3047PF01610
479431.Namu_3046(PF01695)
479431.Namu_2064(PF05063)
479431.Namu_2060PF02371
479431.Namu_3601PF00665
479431.Namu_3600PF00665
479431.Namu_3604(PF00589)
479431.Namu_5264PF00665
479431.Namu_5260(PF13401)
479431.Namu_5286PF02371
479431.Namu_5136PF02371
479431.Namu_4398PF02371
479431.Namu_4399PF02371
479431.Namu_1634PF02371
479431.Namu_0238(PF01014)

Detailed merged results for each protein sequence

Individual results for each protein sequence

Genome based results

Summary

  • Gram negative: NO (FDR = 0.5 %)
  • Functional Type III secretion system: N.D.
  • Functional Type IV secretion system: NO (FDR = 7.2 %)
  • Functional Type VI secretion system: N.D.

Individual results for each secretion system

Parameters:

==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================