Metamenu

Effective results for Ruminococcus lactaris ATCC 29176 (eggnog40)

Summary

Number of putative secreted proteins: 66
- Predicted by T4SEpre: 0
- Predicted by EffectiveELD: 21 eukaryotic-like domains, contained in 66 proteins (0 high, 66 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): None

Protein based results

Putative secreted proteins (weak evidence indicated by parentheses)

ProteinEffectiveT3EffectiveCCBDT4SEpreEffectiveELDPredotar
471875.RUMLAC_01481(PF00059) (PF13240)(mitochondrial)
471875.RUMLAC_01701(PF06541)ER
471875.RUMLAC_00231(PF07555)ER
471875.RUMLAC_00793(PF06541)ER
471875.RUMLAC_01456(PF07555)ER
471875.RUMLAC_01879(PF00344)ER
471875.RUMLAC_02117(PF06541)ER
471875.RUMLAC_01077(PF13358) (PF13384)not used
471875.RUMLAC_01195(PF13358) (PF13565)
471875.RUMLAC_01187(PF13358) (PF13384)
471875.RUMLAC_01416(PF13358) (PF13565)
471875.RUMLAC_01880(PF13358) (PF13565)
471875.RUMLAC_00963(PF13276)(ER)
471875.RUMLAC_01090(PF13358) (PF13565)
471875.RUMLAC_01444(PF13358) (PF13565)
471875.RUMLAC_02168(PF13358) (PF13565)
471875.RUMLAC_02226(PF13358) (PF13565)
471875.RUMLAC_02173(PF13358) (PF13384)
471875.RUMLAC_01864(PF13358)(mitochondrial)
471875.RUMLAC_02571(PF00344)(mitochondrial)
471875.RUMLAC_01066(PF13358) (PF13384)
471875.RUMLAC_00070(PF13358)not used
471875.RUMLAC_02766(PF01795)
471875.RUMLAC_02717(PF01991)
471875.RUMLAC_00842(PF02275)
471875.RUMLAC_00282(PF13358)
471875.RUMLAC_00710(PF13518)
471875.RUMLAC_00712(PF13276)
471875.RUMLAC_00719(PF08797)
471875.RUMLAC_00019(PF14311)
471875.RUMLAC_00490(PF13240)
471875.RUMLAC_00748(PF08797)
471875.RUMLAC_00742(PF13151)
471875.RUMLAC_02248(PF04218)
471875.RUMLAC_00241(PF13276)
471875.RUMLAC_01977(PF01416)
471875.RUMLAC_01574(PF00302)
471875.RUMLAC_01571(PF00302)
471875.RUMLAC_01405(PF13276)
471875.RUMLAC_00349(PF13240)
471875.RUMLAC_00595(PF13276)
471875.RUMLAC_02321(PF01416)
471875.RUMLAC_02140(PF02275)
471875.RUMLAC_01308(PF01795)
471875.RUMLAC_00785(PF13276)
471875.RUMLAC_01781(PF13518)
471875.RUMLAC_01784(PF13276)
471875.RUMLAC_00156(PF06541)
471875.RUMLAC_00155(PF12646)
471875.RUMLAC_01188(PF13151)
471875.RUMLAC_00944(PF02275)not used
471875.RUMLAC_01212(PF13276)
471875.RUMLAC_02176(PF13518)
471875.RUMLAC_02177(PF13276)
471875.RUMLAC_02336(PF13276)
471875.RUMLAC_01267(PF04432)
471875.RUMLAC_01661(PF01416)
471875.RUMLAC_01124(PF13276)
471875.RUMLAC_01125(PF13518)
471875.RUMLAC_01273(PF04432)
471875.RUMLAC_01475(PF13240)
471875.RUMLAC_01478(PF13240)
471875.RUMLAC_00602(PF13384)
471875.RUMLAC_01486(PF13240)
471875.RUMLAC_02748(PF13358)
471875.RUMLAC_02747(PF13518)

Detailed merged results for each protein sequence

Individual results for each protein sequence

Genome based results

Summary

  • Gram negative: NO (FDR = 0.5 %)
  • Functional Type III secretion system: N.D.
  • Functional Type IV secretion system: NO (FDR = 7.2 %)
  • Functional Type VI secretion system: N.D.

Individual results for each secretion system

Parameters:

==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================