Metamenu

Genomes encoding eukaryotic-like proteins

PF13240 zinc-ribbon domain

Copy number in non-pathogens:
Mean=0.36 Stddev=0.95

Genomes significantly enriched in this eukaryotic-like domain (ELD; score >= 4):

Genome Class* ELD score Number of proteins containing this domain
Lactobacillus equigenerosi DSM 18793 = JCM 14505 s 4 5
Lactobacillus paracasei s 5 6
Enorma massiliensis phI s 11 11
Collinsella massiliensis s 13 13
Enorma timonensis s 14 14
Senegalimassilia anaerobia JC110 s 4 5
Ruminococcus bicirculans s 6 7
Lactobacillus plantarum s 4 5
Blautia obeum s 4 5
Roseburia faecis s 5 6
Anaerostipes hadrus s 4 5
[Ruminococcus] torques s 5 6
Ruminococcus sp. AT10 s 9 9
Lactobacillus plantarum s 4 5
Lactobacillus plantarum s 4 5
Dorea formicigenerans ATCC 27755 s 6 7
Ruminococcus lactaris ATCC 29176 s 5 6
Atopobium rimae ATCC 49626 s 5 6
Lactobacillus brevis subsp. gravesensis ATCC 27305 s 4 5
Lactobacillus antri DSM 16041 s 6 7
Lactobacillus plantarum subsp. plantarum ATCC 14917 = JCM 1149 = CGMCC 1.2437 s 4 5
[Clostridium asparagiforme] DSM 15981 s 13 13
[Clostridium] hylemonae DSM 15053 s 5 6
Oribacterium sp. oral taxon 078 str. F0262 s 5 6
Ruminococcus albus 7 = DSM 20455 s 6 7
Dorea sp. D27 s 5 6
Lactobacillus oris PB013-T2-3 s 4 5
Pseudoflavonifractor capillosus ATCC 29799 s 5 6
Ruminococcus torques ATCC 27756 s 6 7
Ruminococcus callidus ATCC 27760 s 6 7
Enterococcus pallens ATCC BAA-351 s 4 5
Bifidobacterium longum subsp. longum 44B s 5 6
Bifidobacterium longum subsp. longum 1-6B s 4 5
Lachnospiraceae bacterium M18-1 s 5 6
[Eubacterium] cellulosolvens 6 s 5 6
Lachnospiraceae bacterium oral taxon 082 str. F0431 s 5 6
Lactobacillus rhamnosus L31 s 5 6
Lactobacillus rhamnosus L34 s 5 6
Lactobacillus rhamnosus L35 s 5 6
Lactobacillus equigenerosi DSM 18793 = JCM 14505 s 4 5
Lactobacillus animalis KCTC 3501 = DSM 20602 s 4 5
Lactobacillus antri DSM 16041 s 6 7
Lactobacillus fructivorans KCTC 3543 = DSM 20203 s 4 5
Lactobacillus plantarum subsp. plantarum ATCC 14917 = JCM 1149 = CGMCC 1.2437 s 4 5
Lactobacillus spicheri DSM 15429 s 4 5
Gardnerella vaginalis 6420B s 4 5
Gardnerella vaginalis 00703Dmash s 5 6
Gardnerella vaginalis 6119V5 s 4 5
Oribacterium sp. oral taxon 078 str. F0263 s 4 5
Enterorhabdus mucosicola DSM 19490 s 8 8
Coprobacillus sp. D6 s 5 6
Lactobacillus coleohominis 101-4-CHN s 8 8
Lachnospiraceae bacterium 1_1_57FAA s 6 7
Lachnospiraceae bacterium 3_1_57FAA_CT1 s 5 6
Lachnospiraceae bacterium 9_1_43BFAA s 5 6
Lachnospiraceae bacterium 3_1_46FAA s 8 8
Lachnospiraceae bacterium 8_1_57FAA s 6 7
Pediococcus acidilactici 7_4 s 4 5
Coprobacillus sp. 29_1 s 5 6
Lachnospiraceae bacterium 2_1_46FAA s 5 6
Lactobacillus pentosus KCA1 s 4 5
Lactobacillus paracasei subsp. tolerans Lpl14 s 4 5
Lactobacillus paracasei subsp. paracasei Lpp49 s 4 5
Lactobacillus fructivorans KCTC 3543 = DSM 20203 s 4 5
Lactobacillus animalis KCTC 3501 = DSM 20602 s 4 5
Bifidobacterium longum subsp. longum CMCC P0001 s 4 5
Lactobacillus gastricus PS3 s 4 5
Lactobacillus casei CRF28 s 4 5
Gardnerella vaginalis AMD s 4 5
Ruminococcus albus AD2013 s 5 6
Butyrivibrio sp. FCS014 s 6 7
Coprococcus sp. HPP0074 s 4 5
Coprococcus sp. HPP0048 s 4 5
Enterococcus pallens ATCC BAA-351 s 4 5
Lachnospiraceae bacterium JC7 s 6 7
Slackia heliotrinireducens DSM 20476 s 22 22
Acidaminococcus fermentans DSM 20731 s 4 5
Butyrivibrio proteoclasticus B316 s 5 6
[Eubacterium] eligens ATCC 27750 s 8 8
Bifidobacterium longum subsp. longum JDM301 s 4 5
Lactobacillus paracasei subsp. paracasei CNCM I-2877 s 5 6
Bifidobacterium stellenboschense s 5 6
Lactobacillus plantarum s 5 6
Ruminococcus sp. NK3A76 s 10 10
Butyrivibrio sp. AE2005 s 4 5
Lactobacillus plantarum s 8 8
Lachnospiraceae bacterium AC2031 s 5 6
Selenomonas ruminantium AC2024 s 4 5
Ruminococcus albus 7 = DSM 20455 s 6 7
Lachnospiraceae bacterium AC3007 s 13 13
Butyrivibrio proteoclasticus FD2007 s 4 5
Lachnospiraceae bacterium AB2028 s 6 7
Butyrivibrio sp. LB2008 s 5 6
[Eubacterium] cellulosolvens LD2006 s 6 7
Anaerovibrio lipolyticus LB2005 s 11 11
Butyrivibrio sp. MC2021 s 5 6
Lachnospiraceae bacterium MA2020 s 4 5
Schwartzia succinivorans DSM 10502 s 5 6
Butyrivibrio fibrisolvens DSM 3071 s 21 21
[Clostridium] aminophilum DSM 10710 s 5 6
Anaerovibrio lipolyticus DSM 3074 s 5 6
Lachnospiraceae bacterium AC2028 s 4 5
Oribacterium sp. FC2011 s 18 18
Lachnospiraceae bacterium MC2017 s 10 10
Butyrivibrio sp. AE2032 s 15 15
Pseudobutyrivibrio ruminis HUN009 s 4 5
Lachnospiraceae bacterium AC2029 s 5 6
Butyrivibrio sp. AE3004 s 5 6
Bifidobacterium longum s 4 5
Lactobacillus plantarum s 4 5
[Clostridium] aminophilum s 5 6
Ruminococcus flavefaciens s 4 5
Anaerovibrio lipolyticus s 5 6
Lactobacillus plantarum s 4 5
Lactobacillus paracasei s 5 6
Lactobacillus casei s 4 5
Lactobacillus plantarum s 4 5
Lactobacillus plantarum s 5 6
Lactobacillus paracasei s 5 6
Lactobacillus plantarum s 5 6
Lactobacillus plantarum s 4 5
Lactobacillus plantarum s 4 5
Lactobacillus plantarum s 4 5
Lactobacillus plantarum s 4 5
Lactobacillus plantarum s 4 5
Lactobacillus plantarum s 4 5
Lactobacillus plantarum s 5 6
Lactobacillus plantarum s 4 5
Lactobacillus plantarum s 4 5
Lactobacillus plantarum s 4 5
Lactobacillus plantarum s 4 5
Lactobacillus plantarum s 4 5
Lactobacillus plantarum s 5 6
Lactobacillus plantarum s 4 5
Lactobacillus plantarum s 4 5
Lactobacillus plantarum s 4 5
Lactobacillus plantarum s 4 5
Lactobacillus plantarum s 4 5
Lactobacillus plantarum s 4 5
Lactobacillus plantarum s 8 8
Lactobacillus plantarum s 4 5
Lactobacillus paracasei s 5 6
Lactobacillus paracasei s 5 6
Lactobacillus plantarum s 4 5
Lachnoanaerobaculum saburreum s 5 6
Oxobacter pfennigii s 4 5
Lactobacillus plantarum s 4 5
Lactobacillus plantarum s 4 5
Lactobacillus plantarum s 4 5
Lactobacillus plantarum s 5 6
Lactobacillus plantarum s 4 5
[Clostridium] aminophilum s 5 6
Ruminococcus flavefaciens s 4 5
Lactobacillus plantarum s 6 7
Lactobacillus plantarum s 4 5
Lactobacillus plantarum s 6 7
Lactobacillus plantarum s 4 5
Lactobacillus plantarum s 4 5
Lactobacillus plantarum s 4 5
Lactobacillus plantarum s 4 5
Lactobacillus plantarum s 4 5
Lactobacillus plantarum s 4 5
Lactobacillus plantarum s 4 5
Lactobacillus plantarum s 6 7
Lactobacillus plantarum s 4 5
Lactobacillus plantarum s 4 5
Lactobacillus plantarum s 4 5
Lactobacillus plantarum s 4 5
Lactobacillus plantarum s 4 5
Lactobacillus plantarum s 5 6
Lactobacillus paracasei s 5 6
Lactobacillus plantarum s 4 5
Pediococcus acidilactici s 4 5
Lactobacillus plantarum s 4 5
Lactobacillus plantarum s 4 5
Lactobacillus plantarum s 4 5
Lactobacillus paracasei s 5 6
Eisenbergiella tayi s 4 5
Lactobacillus plantarum s 4 5
Lactobacillus brevis s 4 5
Lactobacillus plantarum s 4 5
Lactobacillus plantarum s 4 5
Lactobacillus plantarum s 4 5
Lactobacillus plantarum s 4 5
Lactobacillus plantarum s 4 5
Lactobacillus paracasei s 5 6
Lactobacillus plantarum s 4 5
Lactobacillus plantarum s 4 5
Lactobacillus plantarum s 4 5
Lactobacillus plantarum s 4 5
Lactobacillus plantarum s 6 7
Lactobacillus plantarum s 4 5
Lactobacillus plantarum s 4 5
Lactobacillus plantarum s 4 5
Eisenbergiella tayi s 4 5
Lactobacillus paracasei s 6 7
Lactobacillus casei s 5 6
Lactobacillus plantarum s 8 8
Lachnospiraceae bacterium s 4 5
Lactobacillus plantarum s 4 5
Lactobacillus plantarum s 4 5
Pediococcus acidilactici s 4 5
Pediococcus acidilactici s 4 5
Pediococcus acidilactici s 4 5

*p=pathogen;s=symbiont