Effective results for Acidovorax citrulli AAC00-1 (eggnog40)
Summary
Number of putative secreted proteins: 887
- Predicted by EffectiveT3: 369 (high confidence), 351 (low confidence)
- Predicted by EffectiveCCBD: 12 within, 7 before, 24 behind expected region 25..70aa
- Predicted by T4SEpre: 0
- Predicted by EffectiveELD: 25 eukaryotic-like domains, contained in 144 proteins (54 high, 90 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): Type III, Type VI
Protein based results
Putative secreted proteins (weak evidence indicated by parentheses)
| Protein | EffectiveT3 | EffectiveCCBD | T4SEpre | EffectiveELD | Predotar |
|---|---|---|---|---|---|
| 397945.Aave_0706 | (PF13276) PF00665 | (mitochondrial) | |||
| 397945.Aave_0702 | (PF13276) PF00665 | (mitochondrial) | |||
| 397945.Aave_0708 | (PF13276) PF00665 | (mitochondrial) | |||
| 397945.Aave_2398 | (PF13276) PF00665 | (mitochondrial) | |||
| 397945.Aave_2400 | (PF13276) PF00665 | (mitochondrial) | |||
| 397945.Aave_3353 | (PF13276) PF00665 | (mitochondrial) | |||
| 397945.Aave_0693 | (PF13276) PF00665 | (mitochondrial) | |||
| 397945.Aave_4118 | (PF13276) PF00665 | (mitochondrial) | |||
| 397945.Aave_3796 | + | (PF05593) | (mitochondrial) | ||
| 397945.Aave_0519 | (PF13276) PF00665 | (mitochondrial) | |||
| 397945.Aave_0514 | (PF13276) PF00665 | (mitochondrial) | |||
| 397945.Aave_4413 | + | (>) | (ER); (mitochondrial) | ||
| 397945.Aave_3189 | (PF13276) PF00665 | (mitochondrial) | |||
| 397945.Aave_1343 | (<) | (PF12729) | (ER); (mitochondrial) | ||
| 397945.Aave_2118 | (PF12729) | ER | |||
| 397945.Aave_3085 | + | mitochondrial; plastid | |||
| 397945.Aave_4198 | + | (ER) | |||
| 397945.Aave_4446 | (PF12729) | ER | |||
| 397945.Aave_2284 | (PF12729) | ER | |||
| 397945.Aave_3880 | (PF12729) | (ER) | |||
| 397945.Aave_4294 | (PF12729) | mitochondrial; (mitochondrial) | |||
| 397945.Aave_1035 | (PF12138) | ER | |||
| 397945.Aave_1036 | (PF12138) | ER | |||
| 397945.Aave_2436 | (PF12729) | ER; (ER) | |||
| 397945.Aave_2543 | + | (ER); (plastid) | |||
| 397945.Aave_1211 | + | (ER) | |||
| 397945.Aave_0815 | + | mitochondrial; (mitochondrial) | |||
| 397945.Aave_3279 | (>) | ER | |||
| 397945.Aave_2739 | + | (mitochondrial); (plastid) | |||
| 397945.Aave_2737 | + | (mitochondrial); (plastid) | |||
| 397945.Aave_2142 | + | (mitochondrial); plastid | |||
| 397945.Aave_0940 | (PF12729) | (ER) | |||
| 397945.Aave_0700 | (<) | ER | |||
| 397945.Aave_4495 | (PF12729) | ER | |||
| 397945.Aave_1056 | + | mitochondrial; (mitochondrial) | |||
| 397945.Aave_0831 | (PF12729) | (ER) | |||
| 397945.Aave_3288 | + | ER | |||
| 397945.Aave_0227 | (PF12729) | ER | |||
| 397945.Aave_4728 | + | (mitochondrial); plastid | |||
| 397945.Aave_0820 | (>) | (mitochondrial) | |||
| 397945.Aave_0104 | (PF12729) | ER | |||
| 397945.Aave_4344 | + | ER | |||
| 397945.Aave_4648 | + | (ER) | |||
| 397945.Aave_2198 | (PF14113) | (mitochondrial) | |||
| 397945.Aave_1151 | + | mitochondrial; plastid | |||
| 397945.Aave_0690 | + | (mitochondrial); plastid | |||
| 397945.Aave_2742 | + | PF00847 | (ER) | ||
| 397945.Aave_3837 | + | (mitochondrial); plastid | |||
| 397945.Aave_1096 | + | (mitochondrial); (plastid) | |||
| 397945.Aave_4119 | PF00665 | (mitochondrial) | |||
| 397945.Aave_3482 | + | (mitochondrial); plastid | |||
| 397945.Aave_0266 | (PF05704) | ER | |||
| 397945.Aave_1315 | + | mitochondrial; (mitochondrial) | |||
| 397945.Aave_2538 | (PF12729) | ER | |||
| 397945.Aave_0918 | + | mitochondrial | |||
| 397945.Aave_2032 | + | (ER) | |||
| 397945.Aave_2033 | (PF12729) | ER | |||
| 397945.Aave_0784 | (>) | (ER) | |||
| 397945.Aave_0196 | + | mitochondrial; (mitochondrial) | |||
| 397945.Aave_3672 | (>) | (mitochondrial) | |||
| 397945.Aave_0412 | (PF09980) | ER; (ER) | |||
| 397945.Aave_0525 | (+) | (PF08357) | mitochondrial; (mitochondrial) | ||
| 397945.Aave_2809 | (>) | ER | |||
| 397945.Aave_3444 | (PF12729) | ER | |||
| 397945.Aave_0407 | (PF12729) | ER; (ER) | |||
| 397945.Aave_4316 | (>) | ER | |||
| 397945.Aave_2241 | (PF12729) | ER; mitochondrial | |||
| 397945.Aave_2879 | + | (mitochondrial) | |||
| 397945.Aave_3452 | + | mitochondrial; plastid | |||
| 397945.Aave_1430 | + | (ER) | |||
| 397945.Aave_3431 | + | (ER); (plastid) | |||
| 397945.Aave_3508 | + | mitochondrial | |||
| 397945.Aave_1372 | + | (mitochondrial); (plastid) | |||
| 397945.Aave_2730 | (>) | ER | |||
| 397945.Aave_3722 | + | ER; (ER) | |||
| 397945.Aave_0355 | (>) | ER | |||
| 397945.Aave_1590 | (PF12729) | ER | |||
| 397945.Aave_2079 | + | (mitochondrial) | |||
| 397945.Aave_2108 | (PF12729) | ER | |||
| 397945.Aave_3302 | + | (mitochondrial); (plastid) | |||
| 397945.Aave_1905 | + | (mitochondrial) | |||
| 397945.Aave_1344 | (PF12729) | ER | |||
| 397945.Aave_1016 | (+) | (mitochondrial); (plastid) | |||
| 397945.Aave_1244 | + | (plastid) | |||
| 397945.Aave_4334 | + | plastid | |||
| 397945.Aave_2937 | (PF13276) PF00665 | ||||
| 397945.Aave_2844 | + | plastid | |||
| 397945.Aave_3711 | + | (mitochondrial) | |||
| 397945.Aave_3157 | (+) | (mitochondrial) | |||
| 397945.Aave_2627 | + | (plastid) | |||
| 397945.Aave_4615 | + | (plastid) | |||
| 397945.Aave_3884 | + | plastid | |||
| 397945.Aave_3881 | (PF00165) | (plastid) | |||
| 397945.Aave_2056 | (+) | ER; (ER) | |||
| 397945.Aave_3094 | + | (ER) | |||
| 397945.Aave_1960 | (>) | (mitochondrial) | |||
| 397945.Aave_1999 | + | ER; (ER) | |||
| 397945.Aave_0276 | + | plastid | |||
| 397945.Aave_1474 | (+) | (mitochondrial); mitochondrial | |||
| 397945.Aave_2547 | + | (ER) | |||
| 397945.Aave_3894 | (+) | ER | |||
| 397945.Aave_4651 | + | plastid | |||
| 397945.Aave_3973 | + | plastid | |||
| 397945.Aave_0971 | (+) | ER; (ER) | |||
| 397945.Aave_2135 | PF13565 PF00665 | ||||
| 397945.Aave_2136 | (PF01527) | (mitochondrial) | |||
| 397945.Aave_1554 | (+) | (ER) | |||
| 397945.Aave_1042 | (+) | (ER) | |||
| 397945.Aave_1606 | + | plastid | |||
| 397945.Aave_2427 | PF13565 PF00665 | ||||
| 397945.Aave_2426 | (PF01527) | (mitochondrial) | |||
| 397945.Aave_2609 | + | plastid | |||
| 397945.Aave_2099 | (+) | (mitochondrial); (plastid) | |||
| 397945.Aave_3764 | (PF01527) | (mitochondrial) | |||
| 397945.Aave_3763 | PF13565 PF00665 | ||||
| 397945.Aave_3167 | + | (mitochondrial) | |||
| 397945.Aave_2709 | (PF13276) PF00665 | ||||
| 397945.Aave_3949 | + | (mitochondrial) | |||
| 397945.Aave_1057 | + | plastid | |||
| 397945.Aave_1613 | (+) | (mitochondrial) | |||
| 397945.Aave_4710 | PF00240 | (mitochondrial) | |||
| 397945.Aave_4589 | + | plastid | |||
| 397945.Aave_2081 | + | plastid | |||
| 397945.Aave_4395 | + | (plastid) | |||
| 397945.Aave_3117 | (+) | (mitochondrial) | |||
| 397945.Aave_0719 | (PF01527) | (mitochondrial) | |||
| 397945.Aave_3759 | + | + | |||
| 397945.Aave_4241 | (+) | mitochondrial; (mitochondrial) | |||
| 397945.Aave_1995 | (+) | (ER) | |||
| 397945.Aave_2404 | (+) | ER | |||
| 397945.Aave_4400 | + | plastid | |||
| 397945.Aave_1202 | + | (mitochondrial) | |||
| 397945.Aave_4015 | + | (plastid) | |||
| 397945.Aave_0720 | PF13565 PF00665 | ||||
| 397945.Aave_1453 | + | (ER) | |||
| 397945.Aave_1279 | + | (plastid) | |||
| 397945.Aave_1183 | (+) | (mitochondrial) | |||
| 397945.Aave_1074 | (PF01527) | (mitochondrial) | |||
| 397945.Aave_1073 | PF13565 PF00665 | ||||
| 397945.Aave_1079 | + | (plastid) | |||
| 397945.Aave_0851 | + | (plastid) | |||
| 397945.Aave_2192 | + | (ER) | |||
| 397945.Aave_1866 | + | (plastid) | |||
| 397945.Aave_1518 | (PF01527) | (mitochondrial) | |||
| 397945.Aave_1517 | PF13565 PF00665 | ||||
| 397945.Aave_2773 | PF13565 PF00665 | ||||
| 397945.Aave_1625 | (+) | mitochondrial; (mitochondrial) | |||
| 397945.Aave_0110 | (+) | (mitochondrial); (plastid) | |||
| 397945.Aave_4357 | PF13565 PF00665 | ||||
| 397945.Aave_4358 | (PF01527) | (mitochondrial) | |||
| 397945.Aave_1883 | (+) | (mitochondrial) | |||
| 397945.Aave_1647 | (+) | (PF01129) | (plastid) | ||
| 397945.Aave_4742 | + | (mitochondrial) | |||
| 397945.Aave_4583 | + | (plastid) | |||
| 397945.Aave_3341 | PF13565 PF00665 | ||||
| 397945.Aave_3342 | (PF01527) | (mitochondrial) | |||
| 397945.Aave_2838 | (PF05593) | (ER) | |||
| 397945.Aave_3655 | + | (plastid) | |||
| 397945.Aave_0694 | PF13565 PF00665 | ||||
| 397945.Aave_0695 | (PF01527) | (mitochondrial) | |||
| 397945.Aave_0270 | (PF05704) | (ER) | |||
| 397945.Aave_2745 | (+) | (mitochondrial); (plastid) | |||
| 397945.Aave_1891 | + | + | |||
| 397945.Aave_4425 | + | (mitochondrial) | |||
| 397945.Aave_4687 | (+) | (ER) | |||
| 397945.Aave_3798 | PF13565 PF00665 | ||||
| 397945.Aave_3792 | PF13565 PF00665 | ||||
| 397945.Aave_3793 | (PF01527) | (mitochondrial) | |||
| 397945.Aave_3062 | + | (PF06414) | |||
| 397945.Aave_3660 | PF13565 PF00665 | ||||
| 397945.Aave_3661 | (PF01527) | (mitochondrial) | |||
| 397945.Aave_0461 | + | (plastid) | |||
| 397945.Aave_1405 | (PF12729) | (ER) | |||
| 397945.Aave_4490 | + | plastid | |||
| 397945.Aave_2813 | + | (plastid) | |||
| 397945.Aave_0070 | + | (>) | |||
| 397945.Aave_2258 | + | plastid | |||
| 397945.Aave_1335 | + | (mitochondrial) | |||
| 397945.Aave_4401 | + | plastid | |||
| 397945.Aave_1113 | + | (plastid) | |||
| 397945.Aave_2242 | + | (mitochondrial) | |||
| 397945.Aave_2305 | + | (plastid) | |||
| 397945.Aave_4719 | + | (plastid) | |||
| 397945.Aave_2874 | (PF01527) | (mitochondrial) | |||
| 397945.Aave_2875 | PF13565 PF00665 | ||||
| 397945.Aave_2907 | PF00665 | (mitochondrial) | |||
| 397945.Aave_3451 | (+) | (ER) | |||
| 397945.Aave_4322 | + | (plastid) | |||
| 397945.Aave_1362 | (+) | mitochondrial; (plastid) | |||
| 397945.Aave_0431 | + | plastid | |||
| 397945.Aave_0344 | (+) | mitochondrial; (mitochondrial) | |||
| 397945.Aave_4436 | + | plastid | |||
| 397945.Aave_4431 | + | (plastid) | |||
| 397945.Aave_1103 | PF13565 PF00665 | ||||
| 397945.Aave_2952 | (+) | (mitochondrial) | |||
| 397945.Aave_1104 | (PF01527) | (mitochondrial) | |||
| 397945.Aave_2274 | + | (ER) | |||
| 397945.Aave_2275 | + | (ER) | |||
| 397945.Aave_0386 | + | (PF13415) | |||
| 397945.Aave_2007 | (+) | (mitochondrial) | |||
| 397945.Aave_2850 | + | (mitochondrial) | |||
| 397945.Aave_2865 | (PF02201) | (mitochondrial) | |||
| 397945.Aave_3516 | + | (plastid) | |||
| 397945.Aave_0645 | + | (plastid) | |||
| 397945.Aave_0647 | + | plastid | |||
| 397945.Aave_0420 | + | plastid | |||
| 397945.Aave_0357 | + | plastid | |||
| 397945.Aave_0511 | (+) | (ER) | |||
| 397945.Aave_4527 | (+) | mitochondrial | |||
| 397945.Aave_2074 | (+) | (mitochondrial) | |||
| 397945.Aave_1425 | + | (plastid) | |||
| 397945.Aave_2774 | (PF01527) | (mitochondrial) | |||
| 397945.Aave_3899 | + | plastid | |||
| 397945.Aave_2924 | + | (plastid) | |||
| 397945.Aave_3504 | + | (plastid) | |||
| 397945.Aave_1907 | PF13565 PF00665 | ||||
| 397945.Aave_1906 | (PF01527) | (mitochondrial) | |||
| 397945.Aave_3726 | (+) | (mitochondrial) | |||
| 397945.Aave_0185 | + | (PF06733) | |||
| 397945.Aave_4458 | + | plastid | |||
| 397945.Aave_4536 | + | ||||
| 397945.Aave_3852 | + | ||||
| 397945.Aave_1246 | + | ||||
| 397945.Aave_4627 | (PF02201) | ||||
| 397945.Aave_3033 | + | ||||
| 397945.Aave_4390 | + | ||||
| 397945.Aave_1351 | + | ||||
| 397945.Aave_3223 | + | ||||
| 397945.Aave_2979 | PF00665 | ||||
| 397945.Aave_2936 | (PF01527) | ||||
| 397945.Aave_3532 | + | ||||
| 397945.Aave_1977 | + | ||||
| 397945.Aave_4748 | + | ||||
| 397945.Aave_3716 | (+) | (PF13661) | |||
| 397945.Aave_3712 | (+) | (PF05593) | |||
| 397945.Aave_3151 | + | ||||
| 397945.Aave_4199 | (+) | (>) | |||
| 397945.Aave_4191 | + | ||||
| 397945.Aave_0179 | PF00665 | ||||
| 397945.Aave_4324 | + | ||||
| 397945.Aave_1808 | + | ||||
| 397945.Aave_1800 | + | ||||
| 397945.Aave_4445 | PF00665 | ||||
| 397945.Aave_1804 | + | ||||
| 397945.Aave_4504 | PF00665 | ||||
| 397945.Aave_2598 | + | ||||
| 397945.Aave_2280 | + | ||||
| 397945.Aave_1155 | + | ||||
| 397945.Aave_0009 | + | ||||
| 397945.Aave_3023 | + | ||||
| 397945.Aave_0349 | + | ||||
| 397945.Aave_2055 | (PF09980) | ||||
| 397945.Aave_2815 | (+) | (plastid) | |||
| 397945.Aave_2128 | + | ||||
| 397945.Aave_2124 | (+) | (ER) | |||
| 397945.Aave_2125 | + | ||||
| 397945.Aave_3239 | (+) | (mitochondrial) | |||
| 397945.Aave_3232 | + | ||||
| 397945.Aave_3093 | + | ||||
| 397945.Aave_2944 | + | ||||
| 397945.Aave_4290 | (+) | (PF14113) | |||
| 397945.Aave_2947 | + | (plastid) | |||
| 397945.Aave_0619 | + | ||||
| 397945.Aave_0130 | + | ||||
| 397945.Aave_0279 | + | ||||
| 397945.Aave_1997 | + | ||||
| 397945.Aave_1496 | + | ||||
| 397945.Aave_1562 | + | ||||
| 397945.Aave_0546 | + | ||||
| 397945.Aave_0547 | + | ||||
| 397945.Aave_1361 | + | ||||
| 397945.Aave_1814 | + | ||||
| 397945.Aave_1389 | + | ||||
| 397945.Aave_4283 | (PF05593) | ||||
| 397945.Aave_4605 | + | ||||
| 397945.Aave_1633 | + | ||||
| 397945.Aave_1630 | + | ||||
| 397945.Aave_4375 | + | ||||
| 397945.Aave_2049 | (PF05593) | ||||
| 397945.Aave_2041 | (+) | (ER) | |||
| 397945.Aave_0970 | + | ||||
| 397945.Aave_0976 | (>) | ||||
| 397945.Aave_2137 | PF00665 | ||||
| 397945.Aave_1216 | + | ||||
| 397945.Aave_0810 | + | ||||
| 397945.Aave_0811 | + | ||||
| 397945.Aave_0816 | + | ||||
| 397945.Aave_4048 | + | ||||
| 397945.Aave_3392 | (>) | ||||
| 397945.Aave_3394 | PF00665 | ||||
| 397945.Aave_3395 | + | ||||
| 397945.Aave_3398 | + | ||||
| 397945.Aave_0772 | (PF12729) | ||||
| 397945.Aave_0774 | + | ||||
| 397945.Aave_4468 | + | ||||
| 397945.Aave_0159 | + | ||||
| 397945.Aave_1551 | + | ||||
| 397945.Aave_4260 | + | ||||
| 397945.Aave_0073 | + | ||||
| 397945.Aave_1605 | + | ||||
| 397945.Aave_2421 | + | ||||
| 397945.Aave_2608 | + | ||||
| 397945.Aave_2146 | (+) | plastid | |||
| 397945.Aave_2477 | + | ||||
| 397945.Aave_2148 | + | ||||
| 397945.Aave_0556 | + | ||||
| 397945.Aave_0809 | (<) | ||||
| 397945.Aave_4074 | (+) | (mitochondrial) | |||
| 397945.Aave_3727 | + | ||||
| 397945.Aave_3386 | + | ||||
| 397945.Aave_3544 | (+) | (plastid) | |||
| 397945.Aave_1949 | + | ||||
| 397945.Aave_0492 | + | ||||
| 397945.Aave_0493 | + | ||||
| 397945.Aave_0499 | (PF05593) | ||||
| 397945.Aave_0705 | (PF01527) | ||||
| 397945.Aave_0703 | (PF01527) | ||||
| 397945.Aave_0709 | (PF01527) | ||||
| 397945.Aave_1835 | + | ||||
| 397945.Aave_0012 | + | ||||
| 397945.Aave_0013 | (PF06733) | ||||
| 397945.Aave_0015 | + | ||||
| 397945.Aave_2702 | + | ||||
| 397945.Aave_2701 | + | ||||
| 397945.Aave_0986 | + | ||||
| 397945.Aave_4587 | + | ||||
| 397945.Aave_0520 | (PF01527) | ||||
| 397945.Aave_3948 | + | ||||
| 397945.Aave_2414 | + | ||||
| 397945.Aave_1058 | + | ||||
| 397945.Aave_1615 | + | ||||
| 397945.Aave_4098 | (+) | (plastid) | |||
| 397945.Aave_2564 | + | ||||
| 397945.Aave_2560 | PF00665 | ||||
| 397945.Aave_4711 | + | ||||
| 397945.Aave_4417 | + | ||||
| 397945.Aave_1413 | + | ||||
| 397945.Aave_2397 | (PF01527) | ||||
| 397945.Aave_2080 | + | ||||
| 397945.Aave_0839 | (+) | (plastid) | |||
| 397945.Aave_4067 | + | ||||
| 397945.Aave_3282 | + | ||||
| 397945.Aave_2889 | (+) | (plastid) | |||
| 397945.Aave_3575 | + | ||||
| 397945.Aave_0485 | PF00665 | ||||
| 397945.Aave_0488 | + | ||||
| 397945.Aave_3597 | + | ||||
| 397945.Aave_3114 | + | ||||
| 397945.Aave_3116 | + | ||||
| 397945.Aave_3112 | + | ||||
| 397945.Aave_0715 | + | ||||
| 397945.Aave_0712 | (PF01527) | ||||
| 397945.Aave_3626 | + | ||||
| 397945.Aave_3021 | + | ||||
| 397945.Aave_3022 | + | ||||
| 397945.Aave_3751 | (PF05593) | ||||
| 397945.Aave_0003 | + | ||||
| 397945.Aave_1535 | + | ||||
| 397945.Aave_3407 | + | ||||
| 397945.Aave_1449 | + | ||||
| 397945.Aave_1992 | + | ||||
| 397945.Aave_1990 | PF00665 | ||||
| 397945.Aave_2401 | (PF01527) | ||||
| 397945.Aave_1268 | + | ||||
| 397945.Aave_1199 | (+) | (mitochondrial) | |||
| 397945.Aave_1193 | (>) | ||||
| 397945.Aave_1060 | + | ||||
| 397945.Aave_1064 | (+) | (mitochondrial) | |||
| 397945.Aave_2578 | + | ||||
| 397945.Aave_0177 | + | ||||
| 397945.Aave_2362 | (+) | (plastid) | |||
| 397945.Aave_4014 | + | ||||
| 397945.Aave_3561 | + | ||||
| 397945.Aave_0281 | + | ||||
| 397945.Aave_3103 | + | ||||
| 397945.Aave_0726 | + | ||||
| 397945.Aave_3745 | (+) | (PF13207) | |||
| 397945.Aave_3031 | + | ||||
| 397945.Aave_3742 | (>) | ||||
| 397945.Aave_3362 | + | ||||
| 397945.Aave_1456 | + | ||||
| 397945.Aave_1987 | + | ||||
| 397945.Aave_1294 | (+) | (plastid) | |||
| 397945.Aave_1296 | + | ||||
| 397945.Aave_4649 | + | ||||
| 397945.Aave_3960 | + | ||||
| 397945.Aave_3969 | + | ||||
| 397945.Aave_1675 | (+) | (ER) | |||
| 397945.Aave_1077 | + | ||||
| 397945.Aave_0371 | (<) | ||||
| 397945.Aave_0899 | + | ||||
| 397945.Aave_2177 | + | ||||
| 397945.Aave_2484 | + | ||||
| 397945.Aave_2690 | + | ||||
| 397945.Aave_0852 | + | ||||
| 397945.Aave_0930 | + | ||||
| 397945.Aave_0939 | + | ||||
| 397945.Aave_4006 | PF00847 | ||||
| 397945.Aave_4005 | (+) | (mitochondrial) | |||
| 397945.Aave_3101 | + | ||||
| 397945.Aave_4008 | (PF05593) | ||||
| 397945.Aave_3356 | + | ||||
| 397945.Aave_3354 | (PF01527) | ||||
| 397945.Aave_3352 | PF00665 | ||||
| 397945.Aave_2998 | + | ||||
| 397945.Aave_2994 | + | ||||
| 397945.Aave_3134 | + | ||||
| 397945.Aave_1869 | + | ||||
| 397945.Aave_0595 | (+) | (mitochondrial) | |||
| 397945.Aave_1865 | + | ||||
| 397945.Aave_0021 | + | ||||
| 397945.Aave_4356 | + | ||||
| 397945.Aave_4355 | + | ||||
| 397945.Aave_4359 | (PF02902) | ||||
| 397945.Aave_1646 | + | ||||
| 397945.Aave_4743 | + | ||||
| 397945.Aave_3825 | + | ||||
| 397945.Aave_2443 | (>) | ||||
| 397945.Aave_4586 | (>) | ||||
| 397945.Aave_2511 | + | ||||
| 397945.Aave_2205 | (+) | (mitochondrial) | |||
| 397945.Aave_0587 | + | ||||
| 397945.Aave_4237 | + | ||||
| 397945.Aave_4233 | + | ||||
| 397945.Aave_1651 | + | ||||
| 397945.Aave_0841 | + | ||||
| 397945.Aave_4031 | + | ||||
| 397945.Aave_3345 | (PF05593) | ||||
| 397945.Aave_0210 | + | ||||
| 397945.Aave_2481 | + | ||||
| 397945.Aave_3125 | + | ||||
| 397945.Aave_4211 | + | ||||
| 397945.Aave_1870 | PF00665 | ||||
| 397945.Aave_1872 | (<) | ||||
| 397945.Aave_3658 | PF00665 | ||||
| 397945.Aave_0692 | (PF01527) | ||||
| 397945.Aave_0457 | + | ||||
| 397945.Aave_0055 | + | ||||
| 397945.Aave_1506 | + | ||||
| 397945.Aave_1502 | + | ||||
| 397945.Aave_2622 | + | ||||
| 397945.Aave_2740 | (+) | (PF05593) | |||
| 397945.Aave_0477 | + | ||||
| 397945.Aave_4362 | (+) | (plastid) | |||
| 397945.Aave_3903 | + | ||||
| 397945.Aave_1899 | (+) | (mitochondrial) | |||
| 397945.Aave_2692 | + | ||||
| 397945.Aave_1098 | + | ||||
| 397945.Aave_4596 | + | ||||
| 397945.Aave_4598 | PF00665 | ||||
| 397945.Aave_3403 | + | ||||
| 397945.Aave_4683 | + | ||||
| 397945.Aave_2357 | + | ||||
| 397945.Aave_0871 | (+) | plastid | |||
| 397945.Aave_1678 | + | ||||
| 397945.Aave_4028 | + | ||||
| 397945.Aave_4025 | PF00665 | ||||
| 397945.Aave_4021 | + | ||||
| 397945.Aave_0790 | + | ||||
| 397945.Aave_2212 | + | ||||
| 397945.Aave_4117 | (PF01527) | ||||
| 397945.Aave_3248 | + | ||||
| 397945.Aave_3242 | (PF06733) | ||||
| 397945.Aave_3481 | (PF05593) | ||||
| 397945.Aave_3484 | (>) | ||||
| 397945.Aave_4200 | + | ||||
| 397945.Aave_4202 | + | ||||
| 397945.Aave_3462 | + | ||||
| 397945.Aave_3797 | (PF01527) | ||||
| 397945.Aave_0460 | + | ||||
| 397945.Aave_1400 | + | ||||
| 397945.Aave_4376 | + | ||||
| 397945.Aave_1310 | + | ||||
| 397945.Aave_1316 | + | ||||
| 397945.Aave_2689 | + | ||||
| 397945.Aave_2687 | + | ||||
| 397945.Aave_2681 | + | ||||
| 397945.Aave_3809 | (PF08392) | ||||
| 397945.Aave_1137 | (PF12899) | ||||
| 397945.Aave_2220 | + | ||||
| 397945.Aave_2222 | + | ||||
| 397945.Aave_2327 | + | ||||
| 397945.Aave_0864 | + | ||||
| 397945.Aave_0867 | + | ||||
| 397945.Aave_2030 | + | ||||
| 397945.Aave_3252 | + | ||||
| 397945.Aave_3498 | (+) | (ER) | |||
| 397945.Aave_3495 | + | ||||
| 397945.Aave_3490 | + | ||||
| 397945.Aave_3492 | + | ||||
| 397945.Aave_3471 | (<) | ||||
| 397945.Aave_3477 | + | ||||
| 397945.Aave_3478 | (PF05593) | ||||
| 397945.Aave_0673 | PF00665 | ||||
| 397945.Aave_3788 | (PF05593) | ||||
| 397945.Aave_1787 | + | ||||
| 397945.Aave_1784 | + | ||||
| 397945.Aave_0099 | + | ||||
| 397945.Aave_0333 | + | ||||
| 397945.Aave_0533 | + | ||||
| 397945.Aave_3032 | (+) | plastid | |||
| 397945.Aave_0324 | + | ||||
| 397945.Aave_0322 | + | ||||
| 397945.Aave_0256 | + | ||||
| 397945.Aave_4418 | + | ||||
| 397945.Aave_0068 | + | ||||
| 397945.Aave_4447 | + | ||||
| 397945.Aave_4404 | + | ||||
| 397945.Aave_2259 | + | ||||
| 397945.Aave_2256 | + | ||||
| 397945.Aave_2252 | + | ||||
| 397945.Aave_1242 | + | ||||
| 397945.Aave_0188 | + | ||||
| 397945.Aave_2025 | (+) | plastid | |||
| 397945.Aave_3318 | + | ||||
| 397945.Aave_4172 | + | ||||
| 397945.Aave_2803 | + | ||||
| 397945.Aave_2802 | + | ||||
| 397945.Aave_1204 | + | ||||
| 397945.Aave_3931 | + | ||||
| 397945.Aave_3443 | + | ||||
| 397945.Aave_0797 | + | ||||
| 397945.Aave_0795 | (>) | ||||
| 397945.Aave_0660 | + | ||||
| 397945.Aave_0665 | + | ||||
| 397945.Aave_3042 | (+) | (>) | |||
| 397945.Aave_0681 | (+) | (<) | |||
| 397945.Aave_4319 | + | ||||
| 397945.Aave_3795 | + | ||||
| 397945.Aave_1338 | + | ||||
| 397945.Aave_1337 | + | ||||
| 397945.Aave_3866 | + | ||||
| 397945.Aave_1754 | + | ||||
| 397945.Aave_1755 | + | ||||
| 397945.Aave_2300 | + | ||||
| 397945.Aave_2103 | + | ||||
| 397945.Aave_0537 | + | ||||
| 397945.Aave_4718 | + | ||||
| 397945.Aave_3306 | (>) | ||||
| 397945.Aave_4002 | + | ||||
| 397945.Aave_3450 | + | ||||
| 397945.Aave_3453 | (+) | (plastid) | |||
| 397945.Aave_0549 | PF00665 | ||||
| 397945.Aave_0658 | + | ||||
| 397945.Aave_0659 | + | ||||
| 397945.Aave_3056 | + | ||||
| 397945.Aave_1695 | + | ||||
| 397945.Aave_2654 | PF00665 | ||||
| 397945.Aave_2656 | + | ||||
| 397945.Aave_0500 | PF00847 | ||||
| 397945.Aave_1227 | + | ||||
| 397945.Aave_4553 | (+) | plastid | |||
| 397945.Aave_1743 | + | ||||
| 397945.Aave_1748 | + | ||||
| 397945.Aave_1477 | + | ||||
| 397945.Aave_2270 | (>) | ||||
| 397945.Aave_2276 | (+) | plastid | |||
| 397945.Aave_2473 | + | ||||
| 397945.Aave_2000 | + | ||||
| 397945.Aave_2008 | + | ||||
| 397945.Aave_4429 | (+) | (plastid) | |||
| 397945.Aave_3206 | + | ||||
| 397945.Aave_3207 | PF00665 | ||||
| 397945.Aave_3424 | PF00665 | ||||
| 397945.Aave_4084 | + | ||||
| 397945.Aave_4083 | + | ||||
| 397945.Aave_4337 | (+) | (plastid) | |||
| 397945.Aave_3721 | + | ||||
| 397945.Aave_0425 | + | ||||
| 397945.Aave_1910 | + | ||||
| 397945.Aave_0356 | + | ||||
| 397945.Aave_1595 | + | ||||
| 397945.Aave_0513 | (PF01527) | ||||
| 397945.Aave_3803 | + | ||||
| 397945.Aave_1352 | + | ||||
| 397945.Aave_4422 | + | ||||
| 397945.Aave_1359 | + | ||||
| 397945.Aave_4526 | + | ||||
| 397945.Aave_4528 | + | ||||
| 397945.Aave_3800 | + | ||||
| 397945.Aave_3848 | + | ||||
| 397945.Aave_1005 | + | ||||
| 397945.Aave_2462 | + | ||||
| 397945.Aave_3992 | + | ||||
| 397945.Aave_0459 | + | ||||
| 397945.Aave_1515 | + | ||||
| 397945.Aave_0212 | + | ||||
| 397945.Aave_3181 | (>) | ||||
| 397945.Aave_3188 | (PF01527) | ||||
| 397945.Aave_2541 | + | ||||
| 397945.Aave_3218 | + | ||||
| 397945.Aave_3533 | + | ||||
| 397945.Aave_3435 | + | ||||
| 397945.Aave_0113 | + | ||||
| 397945.Aave_3502 | (PF14566) | ||||
| 397945.Aave_4065 | (+) | (mitochondrial) | |||
| 397945.Aave_1903 | (PF14113) | ||||
| 397945.Aave_4141 | + | ||||
| 397945.Aave_0740 | + | ||||
| 397945.Aave_2674 | + | ||||
| 397945.Aave_2670 | (+) | plastid | |||
| 397945.Aave_0165 | + | ||||
| 397945.Aave_1583 | + | ||||
| 397945.Aave_0299 | + | ||||
| 397945.Aave_0567 | + | ||||
| 397945.Aave_1347 | + | ||||
| 397945.Aave_1345 | + | ||||
| 397945.Aave_1349 | (PF06414) | ||||
| 397945.Aave_2584 | (+) | ||||
| 397945.Aave_2589 | (+) | ||||
| 397945.Aave_0362 | (+) | ||||
| 397945.Aave_0366 | (+) | ||||
| 397945.Aave_0364 | (+) | ||||
| 397945.Aave_2452 | (+) | ||||
| 397945.Aave_3987 | (+) | ||||
| 397945.Aave_1164 | (+) | ||||
| 397945.Aave_3851 | (+) | ||||
| 397945.Aave_4393 | (+) | ||||
| 397945.Aave_2113 | (+) | ||||
| 397945.Aave_2112 | (+) | ||||
| 397945.Aave_2116 | (+) | ||||
| 397945.Aave_2115 | (+) | ||||
| 397945.Aave_0995 | (+) | ||||
| 397945.Aave_0996 | (+) | ||||
| 397945.Aave_3088 | (+) | ||||
| 397945.Aave_1970 | (+) | ||||
| 397945.Aave_3155 | (+) | ||||
| 397945.Aave_1489 | (+) | ||||
| 397945.Aave_1485 | (+) | ||||
| 397945.Aave_1481 | (+) | ||||
| 397945.Aave_1483 | (+) | ||||
| 397945.Aave_4506 | (+) | ||||
| 397945.Aave_1398 | (+) | ||||
| 397945.Aave_1711 | (+) | ||||
| 397945.Aave_3623 | (+) | ||||
| 397945.Aave_1157 | (+) | ||||
| 397945.Aave_1159 | (+) | ||||
| 397945.Aave_0646 | (+) | ||||
| 397945.Aave_2123 | (+) | ||||
| 397945.Aave_4054 | (+) | ||||
| 397945.Aave_0968 | (+) | ||||
| 397945.Aave_3525 | (+) | ||||
| 397945.Aave_1964 | (+) | ||||
| 397945.Aave_3141 | (+) | ||||
| 397945.Aave_0760 | (+) | ||||
| 397945.Aave_2615 | (+) | ||||
| 397945.Aave_1383 | (+) | ||||
| 397945.Aave_4604 | (+) | ||||
| 397945.Aave_1032 | (+) | ||||
| 397945.Aave_2430 | (+) | ||||
| 397945.Aave_0601 | (+) | ||||
| 397945.Aave_0602 | (+) | ||||
| 397945.Aave_2139 | (+) | ||||
| 397945.Aave_0522 | (+) | ||||
| 397945.Aave_1214 | (+) | ||||
| 397945.Aave_4043 | (+) | ||||
| 397945.Aave_4289 | (+) | ||||
| 397945.Aave_3772 | (+) | ||||
| 397945.Aave_3172 | (+) | ||||
| 397945.Aave_0775 | (+) | ||||
| 397945.Aave_3074 | (+) | ||||
| 397945.Aave_0156 | (+) | ||||
| 397945.Aave_1559 | (+) | ||||
| 397945.Aave_0550 | (+) | ||||
| 397945.Aave_0559 | (+) | ||||
| 397945.Aave_1603 | (+) | ||||
| 397945.Aave_2425 | (+) | ||||
| 397945.Aave_0983 | (+) | ||||
| 397945.Aave_4756 | (+) | ||||
| 397945.Aave_2388 | (+) | ||||
| 397945.Aave_2095 | (+) | ||||
| 397945.Aave_4267 | (+) | ||||
| 397945.Aave_0808 | (+) | ||||
| 397945.Aave_1499 | (+) | ||||
| 397945.Aave_4076 | (+) | ||||
| 397945.Aave_4072 | (+) | ||||
| 397945.Aave_4070 | (+) | ||||
| 397945.Aave_3541 | (+) | ||||
| 397945.Aave_2961 | (+) | ||||
| 397945.Aave_2967 | (+) | ||||
| 397945.Aave_3160 | (+) | ||||
| 397945.Aave_2703 | (+) | ||||
| 397945.Aave_2415 | (+) | ||||
| 397945.Aave_3942 | (+) | ||||
| 397945.Aave_3947 | (+) | ||||
| 397945.Aave_1059 | (+) | ||||
| 397945.Aave_2077 | (+) | ||||
| 397945.Aave_2002 | (+) | ||||
| 397945.Aave_2085 | (+) | ||||
| 397945.Aave_0837 | (+) | ||||
| 397945.Aave_4063 | (+) | ||||
| 397945.Aave_4066 | (+) | ||||
| 397945.Aave_3595 | (+) | ||||
| 397945.Aave_4398 | (+) | ||||
| 397945.Aave_2974 | (+) | ||||
| 397945.Aave_2973 | (+) | ||||
| 397945.Aave_0716 | (+) | ||||
| 397945.Aave_4484 | (+) | ||||
| 397945.Aave_2629 | (+) | ||||
| 397945.Aave_2628 | (+) | ||||
| 397945.Aave_4579 | (+) | ||||
| 397945.Aave_3019 | (+) | ||||
| 397945.Aave_1446 | (+) | ||||
| 397945.Aave_2713 | (+) | ||||
| 397945.Aave_0758 | (+) | ||||
| 397945.Aave_1994 | (+) | ||||
| 397945.Aave_2408 | (+) | ||||
| 397945.Aave_1669 | (+) | ||||
| 397945.Aave_1660 | (+) | ||||
| 397945.Aave_0197 | (+) | ||||
| 397945.Aave_2169 | (+) | ||||
| 397945.Aave_2165 | (+) | ||||
| 397945.Aave_0170 | (+) | ||||
| 397945.Aave_2364 | (+) | ||||
| 397945.Aave_3196 | (+) | ||||
| 397945.Aave_0824 | (+) | ||||
| 397945.Aave_4010 | (+) | ||||
| 397945.Aave_3585 | (+) | ||||
| 397945.Aave_3105 | (+) | ||||
| 397945.Aave_3104 | (+) | ||||
| 397945.Aave_1378 | (+) | ||||
| 397945.Aave_0287 | (+) | ||||
| 397945.Aave_0034 | (+) | ||||
| 397945.Aave_2760 | (+) | ||||
| 397945.Aave_0219 | (+) | ||||
| 397945.Aave_0102 | (+) | ||||
| 397945.Aave_0101 | (+) | ||||
| 397945.Aave_0105 | (+) | ||||
| 397945.Aave_4340 | (+) | ||||
| 397945.Aave_3967 | (+) | ||||
| 397945.Aave_1251 | (+) | ||||
| 397945.Aave_0699 | (+) | ||||
| 397945.Aave_4003 | (+) | ||||
| 397945.Aave_2190 | (+) | ||||
| 397945.Aave_4278 | (+) | ||||
| 397945.Aave_0733 | (+) | ||||
| 397945.Aave_4220 | (+) | ||||
| 397945.Aave_1461 | (+) | ||||
| 397945.Aave_1888 | (+) | ||||
| 397945.Aave_3822 | (+) | ||||
| 397945.Aave_4271 | (+) | ||||
| 397945.Aave_1085 | (+) | ||||
| 397945.Aave_2519 | (+) | ||||
| 397945.Aave_2203 | (+) | ||||
| 397945.Aave_1521 | (+) | ||||
| 397945.Aave_3061 | (+) | ||||
| 397945.Aave_0800 | (+) | ||||
| 397945.Aave_1120 | (+) | ||||
| 397945.Aave_0847 | (+) | ||||
| 397945.Aave_0908 | (+) | ||||
| 397945.Aave_0901 | (+) | ||||
| 397945.Aave_2491 | (+) | ||||
| 397945.Aave_3122 | (+) | ||||
| 397945.Aave_0696 | (+) | ||||
| 397945.Aave_3014 | (+) | ||||
| 397945.Aave_1984 | (+) | ||||
| 397945.Aave_0278 | (+) | ||||
| 397945.Aave_0470 | (+) | ||||
| 397945.Aave_1253 | (+) | ||||
| 397945.Aave_1892 | (+) | ||||
| 397945.Aave_1894 | (+) | ||||
| 397945.Aave_2698 | (+) | ||||
| 397945.Aave_2696 | (+) | ||||
| 397945.Aave_2697 | (+) | ||||
| 397945.Aave_2520 | (+) | ||||
| 397945.Aave_2891 | (+) | ||||
| 397945.Aave_4681 | (+) | ||||
| 397945.Aave_2234 | (+) | ||||
| 397945.Aave_2230 | (+) | ||||
| 397945.Aave_1177 | (+) | ||||
| 397945.Aave_0877 | (+) | ||||
| 397945.Aave_0878 | (+) | ||||
| 397945.Aave_0915 | (+) | ||||
| 397945.Aave_1672 | (+) | ||||
| 397945.Aave_3929 | (+) | ||||
| 397945.Aave_4486 | (+) | ||||
| 397945.Aave_0042 | (+) | ||||
| 397945.Aave_1793 | (+) | ||||
| 397945.Aave_0469 | (+) | ||||
| 397945.Aave_3667 | (+) | ||||
| 397945.Aave_3665 | (+) | ||||
| 397945.Aave_0467 | (+) | ||||
| 397945.Aave_1406 | (+) | ||||
| 397945.Aave_1401 | (+) | ||||
| 397945.Aave_4498 | (+) | ||||
| 397945.Aave_0310 | (+) | ||||
| 397945.Aave_2686 | (+) | ||||
| 397945.Aave_2684 | (+) | ||||
| 397945.Aave_2534 | (+) | ||||
| 397945.Aave_2531 | (+) | ||||
| 397945.Aave_4562 | (+) | ||||
| 397945.Aave_2224 | (+) | ||||
| 397945.Aave_2321 | (+) | ||||
| 397945.Aave_4029 | (+) | ||||
| 397945.Aave_0865 | (+) | ||||
| 397945.Aave_0860 | (+) | ||||
| 397945.Aave_3685 | (+) | ||||
| 397945.Aave_2038 | (+) | ||||
| 397945.Aave_3321 | (+) | ||||
| 397945.Aave_0512 | (+) | ||||
| 397945.Aave_4305 | (+) | ||||
| 397945.Aave_4306 | (+) | ||||
| 397945.Aave_4300 | (+) | ||||
| 397945.Aave_1305 | (+) | ||||
| 397945.Aave_4411 | (+) | ||||
| 397945.Aave_4771 | (+) | ||||
| 397945.Aave_4773 | (+) | ||||
| 397945.Aave_2174 | (+) | ||||
| 397945.Aave_1683 | (+) | ||||
| 397945.Aave_3870 | (+) | ||||
| 397945.Aave_4790 | (+) | ||||
| 397945.Aave_4661 | (+) | ||||
| 397945.Aave_3944 | (+) | ||||
| 397945.Aave_3930 | (+) | ||||
| 397945.Aave_3906 | (+) | ||||
| 397945.Aave_0065 | (+) | ||||
| 397945.Aave_0061 | (+) | ||||
| 397945.Aave_0081 | (+) | ||||
| 397945.Aave_0408 | (+) | ||||
| 397945.Aave_0406 | (+) | ||||
| 397945.Aave_3790 | (+) | ||||
| 397945.Aave_0245 | (+) | ||||
| 397945.Aave_4402 | (+) | ||||
| 397945.Aave_1687 | (+) | ||||
| 397945.Aave_1685 | (+) | ||||
| 397945.Aave_1209 | (+) | ||||
| 397945.Aave_2790 | (+) | ||||
| 397945.Aave_2307 | (+) | ||||
| 397945.Aave_1472 | (+) | ||||
| 397945.Aave_3049 | (+) | ||||
| 397945.Aave_0889 | (+) | ||||
| 397945.Aave_1491 | (+) | ||||
| 397945.Aave_2017 | (+) | ||||
| 397945.Aave_2012 | (+) | ||||
| 397945.Aave_3301 | (+) | ||||
| 397945.Aave_3278 | (+) | ||||
| 397945.Aave_4277 | (+) | ||||
| 397945.Aave_3459 | (+) | ||||
| 397945.Aave_3458 | (+) | ||||
| 397945.Aave_3695 | (+) | ||||
| 397945.Aave_0435 | (+) | ||||
| 397945.Aave_3877 | (+) | ||||
| 397945.Aave_1102 | (+) | ||||
| 397945.Aave_2475 | (+) | ||||
| 397945.Aave_0385 | (+) | ||||
| 397945.Aave_2009 | (+) | ||||
| 397945.Aave_2535 | (+) | ||||
| 397945.Aave_2869 | (+) | ||||
| 397945.Aave_1112 | (+) | ||||
| 397945.Aave_3208 | (+) | ||||
| 397945.Aave_3428 | (+) | ||||
| 397945.Aave_3426 | (+) | ||||
| 397945.Aave_3422 | (+) | ||||
| 397945.Aave_4080 | (+) | ||||
| 397945.Aave_4585 | (+) | ||||
| 397945.Aave_1146 | (+) | ||||
| 397945.Aave_1374 | (+) | ||||
| 397945.Aave_2015 | (+) | ||||
| 397945.Aave_2642 | (+) | ||||
| 397945.Aave_2647 | (+) | ||||
| 397945.Aave_1597 | (+) | ||||
| 397945.Aave_0516 | (+) | ||||
| 397945.Aave_1350 | (+) | ||||
| 397945.Aave_4521 | (+) | ||||
| 397945.Aave_1779 | (+) | ||||
| 397945.Aave_2260 | (+) | ||||
| 397945.Aave_2269 | (+) | ||||
| 397945.Aave_2461 | (+) | ||||
| 397945.Aave_2465 | (+) | ||||
| 397945.Aave_3991 | (+) | ||||
| 397945.Aave_2943 | (+) | ||||
| 397945.Aave_3977 | (+) | ||||
| 397945.Aave_0599 | (+) | ||||
| 397945.Aave_1424 | (+) | ||||
| 397945.Aave_2101 | (+) | ||||
| 397945.Aave_2105 | (+) | ||||
| 397945.Aave_2720 | (+) | ||||
| 397945.Aave_2871 | (+) | ||||
| 397945.Aave_0115 | (+) | ||||
| 397945.Aave_0114 | (+) | ||||
| 397945.Aave_3503 | (+) | ||||
| 397945.Aave_1818 | (+) | ||||
| 397945.Aave_4187 | (+) | ||||
| 397945.Aave_1325 | (+) | ||||
| 397945.Aave_2677 | (+) | ||||
| 397945.Aave_1587 | (+) | ||||
| 397945.Aave_0565 | (+) |
Detailed merged results for each protein sequence
- Detailed merged results as table (merge_results.html)
- Detailed merged results as tab delimited file (merge_results.csv)
Individual results for each protein sequence
- EffectiveT3 predictions using new standard model 2.0.1 (PROTEINS.NEW.EFFECTIVET3)
- EffectiveT3 predictions using old standard model 1.0.1 (PROTEINS.OLD.EFFECTIVET3)
- EffectiveCCBD predictions (PROTEINS.CHAPERONES.TXT)
- EffectiveELD predictions (PROTEINS.ELD.TXT)
- Predotar predictions using animal/human model (Predotar_output_modelANIMAL.TXT)
- Predotar predictions using plant model (Predotar_output_modelPLANT.TXT)
Genome based results
Summary
- Gram negative: YES (FDR = 0.5 %)
- Functional Type III secretion system: YES (FDR = 12.5 %)
Estimated copy number = 1.2 (12/10 KEGG proteins)
- Functional Type IV secretion system: NO (FDR = 7.2 %)
- Functional Type VI secretion system: YES (FDR = 7.7 %)
Estimated copy number = 2.125 (17/8 KEGG proteins)
Individual results for each secretion system
- List of 100 most important COGs/NOGs for prediction of functional Type III secretion system (T3_top100_COGS.xls)
- List of 100 most important COGs/NOGs for prediction of functional Type IV secretion system (T4_top100_COGS.xls)
- List of 100 most important COGs/NOGs for prediction of functional Type VI secretion system (T6_top100_COGS.xls)
- List of COGs assigned to Type III secretion system in KEGG (T3SS_KEGG_cmp.xls)
- List of COGs assigned to Type IV secretion system in KEGG (T4SS_KEGG_cmp.xls)
- List of COGs assigned to Type VI secretion system in KEGG (T6SS_KEGG_cmp.xls)
Parameters:
==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================
Estimated copy number = 1.2 (12/10 KEGG proteins)
Estimated copy number = 2.125 (17/8 KEGG proteins)
Release announcements
News
Latest publications
Contact
- +43 1 4277 76681
- +43 1 4277 876681
- contact.cube@univie.ac.at
