Metamenu

Genomes encoding eukaryotic-like proteins

PF00240 Ubiquitin family

Copy number in non-pathogens:
Mean=0.01 Stddev=0.10

Genomes significantly enriched in this eukaryotic-like domain (ELD; score >= 4):

Genome Class* ELD score Number of proteins containing this domain
Bacteroides fragilis NCTC 9343 s 10 1
Paenibacillus senegalensis JC66 s 10 1
Collinsella massiliensis s 10 1
Enorma timonensis s 10 1
Bacteroides fragilis 638R s 10 1
Acidovorax avenae subsp. avenae ATCC 19860 s 10 1
Ruminococcus albus 7 = DSM 20455 s 20 2
Coprobacillus sp. 8_1_38FAA s 10 1
Bacteroides fragilis str. I1345 s 10 1
Bacteroides fragilis str. A7 (UDC12-2) s 10 1
Bacteroides fragilis str. S38L3 s 10 1
Bacteroides fragilis str. S38L5 s 10 1
Lachnospira multipara ATCC 19207 s 10 1
Bacteroides nordii CL02T12C05 s 10 1
Ochrovirga pacifica s 10 1
Pseudomonas syringae CC94 s 10 1
Pseudomonas syringae pv. syringae 1212 s 10 1
Pseudomonas syringae CC457 s 10 1
Pseudomonas syringae CC440 s 10 1
Acidovorax avenae subsp. avenae RS-1 s 10 1
Ruminococcus albus AD2013 s 10 1
Pseudomonas syringae pv. syringae str. B301D-R p 10 1
Bacteroides sp. HPS0048 s 10 1
Acidovorax citrulli AAC00-1 s 10 1
Ruminococcus albus 7 = DSM 20455 s 20 2
Prevotella brevis ATCC 19188 s 20 2
Saccharibacillus sacchari DSM 19268 s 10 1
Pseudomonas syringae pv. syringae s 10 1
Myxosarcina sp. GI1 s 10 1
Pseudomonas syringae s 10 1
Pseudomonas fluorescens s 10 1
Pseudomonas syringae pv. syringae B301D s 10 1
Pseudomonas fluorescens s 10 1
Bacteroides fragilis s 10 1
Burkholderia territorii s 10 1
Burkholderia territorii s 10 1
Burkholderia territorii s 10 1
Pseudomonas syringae pv. syringae s 10 1
Bacteroides fragilis s 10 1
Bacteroides fragilis s 10 1
Pseudomonas syringae pv. syringae s 10 1
Pseudomonas syringae pv. syringae s 10 1
Pseudomonas syringae pv. syringae s 10 1
Pseudomonas syringae pv. syringae s 10 1
Acidovorax avenae s 10 1
Pseudoalteromonas lipolytica s 10 1
Acinetobacter baumannii s 10 1
Acinetobacter baumannii s 10 1
Acinetobacter baumannii s 10 1
Acinetobacter baumannii s 10 1
Acinetobacter baumannii s 10 1
Acinetobacter baumannii s 10 1
Pseudomonas syringae pv. syringae s 10 1
Pseudomonas syringae s 10 1
Pseudomonas syringae s 10 1
Pseudomonas syringae s 10 1
Pseudomonas syringae s 10 1
Acinetobacter baumannii s 10 1
Bacteroides fragilis s 10 1
Paraburkholderia caryophylli s 10 1

*p=pathogen;s=symbiont