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Genomes encoding eukaryotic-like proteins

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PF12138 Spherulation-specific family 4

Copy number in non-pathogens:
Mean=0.12 Stddev=0.45

Genomes significantly enriched in this eukaryotic-like domain (ELD; score >= 4):

Genome Class* ELD score Number of proteins containing this domain
Leptotrichia buccalis C-1013-b s 4 2
Acidovorax avenae subsp. avenae ATCC 19860 s 4 2
Streptomyces thermolilacinus SPC6 s 4 2
Streptomyces sp. SirexAA-E s 4 2
Cardiobacterium valvarum F0432 s 4 2
Streptomyces ipomoeae 91-03 s 4 2
Leptotrichia wadei F0279 s 6 3
Leptotrichia shahii DSM 19757 s 4 2
Leptotrichia wadei DSM 19758 s 6 3
Leptotrichia trevisanii DSM 22070 s 6 3
Streptomyces sp. TOR3209 s 4 2
Streptomyces somaliensis DSM 40738 s 4 2
Acidovorax avenae subsp. avenae RS-1 s 4 2
Acidovorax citrulli AAC00-1 s 4 2
Streptomyces scabiei s 4 2
Streptomyces pluripotens s 4 2
Streptomyces pluripotens s 4 2
Streptomyces griseus s 4 2
Streptomyces europaeiscabiei s 4 2
Acidovorax avenae s 4 2
Streptomyces europaeiscabiei s 4 2
Streptomyces europaeiscabiei s 4 2
Streptomyces sp. 96-12 s 6 3
Acidovorax sp. RAC01 s 4 2
Streptomyces sp. SAT1 s 4 2
Streptomyces scabiei s 6 3
Streptomyces scabiei s 6 3

*p=pathogen;s=symbiont

Release announcements

News

  • EffectiveDB genome mode fixed

    24.11.20
  • EFFECTIVEELD 5.2: EUKARYOTIC-LIKE DOMAIN PREDICTION UPGRADED TO PFAM 31

    20.08.17
  • EffectiveELD 5.1: Eukaryotic-like domain prediction upgraded to Pfam 29

    24.06.16

Latest publications

  • EffectiveDB-updates and novel features for a better annotation of bacterial secreted proteins and Type III, IV, VI secretion systems.
  • Prediction of microbial phenotypes based on comparative genomics.

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