Effective results for Labrenzia aggregata IAM 12614 (eggnog40)

Summary

Number of putative secreted proteins: 332
- Predicted by T4SEpre: 163
- Predicted by EffectiveELD: 33 eukaryotic-like domains, contained in 203 proteins (51 high, 152 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): Type IV

Protein based results

Putative secreted proteins (weak evidence indicated by parentheses)

ProteinEffectiveT3EffectiveCCBDT4SEpreEffectiveELDPredotar
384765.SIAM614_29936(PF06742) (PF06863)ER
384765.SIAM614_21852+(PF03480)ER; (ER)
384765.SIAM614_01534(PF13276) PF13683mitochondrial
384765.SIAM614_26156(PF06742) (PF06863)ER
384765.SIAM614_28826(PF06742) (PF06863)ER
384765.SIAM614_00255(PF13276) PF13683mitochondrial
384765.SIAM614_00075(PF13276) PF13683mitochondrial
384765.SIAM614_00572(PF13276) (PF00665)mitochondrial
384765.SIAM614_16517+(PF00656)ER
384765.SIAM614_30786+(PF03480)ER
384765.SIAM614_30661(PF03480)ER
384765.SIAM614_29171(PF06742) (PF06863)(ER)
384765.SIAM614_10093(PF03480)ER
384765.SIAM614_05628(PF03480)ER
384765.SIAM614_11778+ER
384765.SIAM614_10138(PF08239)ER
384765.SIAM614_10213+mitochondrial
384765.SIAM614_06733(PF00656)ER
384765.SIAM614_12688(PF00656)ER
384765.SIAM614_03518(PF03480)ER; (ER)
384765.SIAM614_15747+ER
384765.SIAM614_11983(PF03480)(ER)
384765.SIAM614_01004+(mitochondrial)
384765.SIAM614_18464+ER
384765.SIAM614_20970+(ER)
384765.SIAM614_23952+ER
384765.SIAM614_02171(PF04143)ER
384765.SIAM614_11868+ER
384765.SIAM614_27987(PF03480)ER
384765.SIAM614_22612+mitochondrial; (mitochondrial)
384765.SIAM614_29701(PF13276)(mitochondrial)
384765.SIAM614_01986+ER
384765.SIAM614_17154(PF03480)mitochondrial; (mitochondrial)
384765.SIAM614_01239(PF01527)(mitochondrial)
384765.SIAM614_15727+ER
384765.SIAM614_19381+ER
384765.SIAM614_08314PF13683(mitochondrial)
384765.SIAM614_03261(PF00656)ER
384765.SIAM614_06578+ER
384765.SIAM614_13218+ER
384765.SIAM614_26381(PF03480)mitochondrial
384765.SIAM614_08299PF13683(mitochondrial)
384765.SIAM614_20106+ER
384765.SIAM614_00872(PF08239)(mitochondrial); (plastid)
384765.SIAM614_07063+ER
384765.SIAM614_21752+ER
384765.SIAM614_06028+(mitochondrial); plastid
384765.SIAM614_01319(PF13495)mitochondrial; (mitochondrial)
384765.SIAM614_29211+ER
384765.SIAM614_29006(PF03480)(mitochondrial)
384765.SIAM614_21917(PF00656)(ER)
384765.SIAM614_21912(PF00656)ER
384765.SIAM614_22362+ER
384765.SIAM614_05085(PF01094)ER
384765.SIAM614_29806(PF03480)ER
384765.SIAM614_04115(PF04143)ER
384765.SIAM614_25027PF13683(ER); (mitochondrial)
384765.SIAM614_30136(PF04143)ER
384765.SIAM614_14670+ER; (mitochondrial)
384765.SIAM614_00722+(PF08239)plastid
384765.SIAM614_12853(PF00656)ER
384765.SIAM614_20066(PF00656)ER; mitochondrial
384765.SIAM614_20061+ER
384765.SIAM614_17744+ER
384765.SIAM614_05391(PF08239)ER
384765.SIAM614_20001(PF08239)ER
384765.SIAM614_25302(PF08239)ER
384765.SIAM614_22502(PF03480)mitochondrial; (mitochondrial)
384765.SIAM614_02821PF10712(mitochondrial)
384765.SIAM614_00215(PF13276) (PF00665)(ER)
384765.SIAM614_19636+ER
384765.SIAM614_22192(PF03480)ER; mitochondrial
384765.SIAM614_28402(PF00656)(ER); ER
384765.SIAM614_01624(PF13495)mitochondrial; (mitochondrial)
384765.SIAM614_24892+mitochondrial
384765.SIAM614_29941(PF06742) (PF06863)(ER)
384765.SIAM614_11623+ER
384765.SIAM614_25342+ER
384765.SIAM614_19601+ER
384765.SIAM614_06643(PF03480)ER
384765.SIAM614_00010(PF13495)mitochondrial; (mitochondrial)
384765.SIAM614_06193+ER
384765.SIAM614_11643(PF04325)(mitochondrial)
384765.SIAM614_19134+ER
384765.SIAM614_01916+ER
384765.SIAM614_21532PF13683(mitochondrial)
384765.SIAM614_26181(PF03480)ER
384765.SIAM614_27323(PF03480)ER
384765.SIAM614_00642(PF13495)mitochondrial; (mitochondrial)
384765.SIAM614_25417(PF04143)ER
384765.SIAM614_27657(PF01847)(ER)
384765.SIAM614_17859(PF03480)ER
384765.SIAM614_18924PF10563ER
384765.SIAM614_21942(PF04143)ER
384765.SIAM614_20156(PF03480)mitochondrial
384765.SIAM614_26006(PF03480)ER; (mitochondrial)
384765.SIAM614_17544(PF00656)ER
384765.SIAM614_22837+(ER)
384765.SIAM614_21927(PF08239)ER
384765.SIAM614_12713+ER
384765.SIAM614_15215(PF06455)ER
384765.SIAM614_28077(PF03480)ER; (ER)
384765.SIAM614_22127(PF03480)ER
384765.SIAM614_25032+ER
384765.SIAM614_23462+(mitochondrial)
384765.SIAM614_29176(PF06742) (PF06863)
384765.SIAM614_06698(PF13023)(mitochondrial)
384765.SIAM614_00040(PF00665)(mitochondrial)
384765.SIAM614_21892+(mitochondrial)
384765.SIAM614_22557+(mitochondrial)
384765.SIAM614_28841(PF06742) (PF06863)
384765.SIAM614_00587(PF13276) (PF00665)
384765.SIAM614_22652(PF03480)(mitochondrial)
384765.SIAM614_14410(PF13551) (PF00665)
384765.SIAM614_01334(PF00665)(mitochondrial)
384765.SIAM614_01109(PF00665)(mitochondrial)
384765.SIAM614_16542+(plastid)
384765.SIAM614_08943(PF01527)(mitochondrial)
384765.SIAM614_01404(PF13551) (PF00665)
384765.SIAM614_21260+(mitochondrial)
384765.SIAM614_28836(PF06742) (PF06863)not used
384765.SIAM614_00702+PF13683
384765.SIAM614_19706(PF03480)plastid
384765.SIAM614_00552+(ER)
384765.SIAM614_06663(PF05292)(mitochondrial)
384765.SIAM614_00577(PF01527)(mitochondrial)
384765.SIAM614_15100+(plastid)
384765.SIAM614_01249(PF00665)(mitochondrial)
384765.SIAM614_01244(PF13276)(ER)
384765.SIAM614_28831(PF06742) (PF06863)
384765.SIAM614_01094+(plastid)
384765.SIAM614_21517PF00312(mitochondrial)
384765.SIAM614_14420(PF13551) (PF00665)
384765.SIAM614_08264(PF13276) PF13683
384765.SIAM614_08194(PF01527)(mitochondrial)
384765.SIAM614_08204(PF13276) (PF00665)
384765.SIAM614_21902(PF00656)(mitochondrial)
384765.SIAM614_08953(PF13276) (PF00665)
384765.SIAM614_21652+(mitochondrial)
384765.SIAM614_00387+
384765.SIAM614_26948(PF08443)
384765.SIAM614_01474PF02371
384765.SIAM614_05386+
384765.SIAM614_00250(PF01527)
384765.SIAM614_06648(PF03480)
384765.SIAM614_12378+
384765.SIAM614_28966(PF14707)
384765.SIAM614_00507+
384765.SIAM614_00502PF13683
384765.SIAM614_18799PF02371
384765.SIAM614_02836+
384765.SIAM614_14930+
384765.SIAM614_00265+
384765.SIAM614_01926+
384765.SIAM614_06693(PF00102)
384765.SIAM614_27278+
384765.SIAM614_19099(PF13023)
384765.SIAM614_30891+
384765.SIAM614_18719+
384765.SIAM614_21305+
384765.SIAM614_00542(PF00665)
384765.SIAM614_00225(PF01527)
384765.SIAM614_22237+
384765.SIAM614_23017+
384765.SIAM614_28981+
384765.SIAM614_06533+
384765.SIAM614_31546(PF13875)
384765.SIAM614_21460(PF00665)
384765.SIAM614_18814(PF08443)
384765.SIAM614_15490(PF11074)
384765.SIAM614_29706(PF01527)
384765.SIAM614_07003+
384765.SIAM614_00582PF02371
384765.SIAM614_11803(PF08239)
384765.SIAM614_02521(PF00665)
384765.SIAM614_29611(PF06742)
384765.SIAM614_24807+
384765.SIAM614_07393+
384765.SIAM614_23867(PF04325)not used
384765.SIAM614_11103+
384765.SIAM614_00422+
384765.SIAM614_21527(PF01527)
384765.SIAM614_18974PF02371
384765.SIAM614_18759(PF03480)
384765.SIAM614_12018+
384765.SIAM614_03653(PF03480)not used
384765.SIAM614_11788(PF14707)
384765.SIAM614_16922(PF06742)
384765.SIAM614_30191(PF00665)
384765.SIAM614_25082PF02371
384765.SIAM614_31071(PF03480)
384765.SIAM614_12783+
384765.SIAM614_03638+
384765.SIAM614_30051+
384765.SIAM614_09463+
384765.SIAM614_12998+
384765.SIAM614_15500(PF11523)
384765.SIAM614_00672PF13683
384765.SIAM614_06843(PF14707)
384765.SIAM614_08259(PF01527)
384765.SIAM614_13908+
384765.SIAM614_07508+
384765.SIAM614_24472+
384765.SIAM614_02691+
384765.SIAM614_02966+
384765.SIAM614_00337PF02371
384765.SIAM614_29696PF13683
384765.SIAM614_01314+
384765.SIAM614_05461+
384765.SIAM614_15562(PF00665)
384765.SIAM614_19531+
384765.SIAM614_23862(PF04325)
384765.SIAM614_05783+
384765.SIAM614_06788+
384765.SIAM614_13433(PF07364)
384765.SIAM614_14805+
384765.SIAM614_21932(PF04143)
384765.SIAM614_19981(PF14295)
384765.SIAM614_06413+
384765.SIAM614_12263+
384765.SIAM614_11518+
384765.SIAM614_24332PF02371
384765.SIAM614_19511+
384765.SIAM614_00767PF02371
384765.SIAM614_21827PF02371
384765.SIAM614_18254+
384765.SIAM614_24352+
384765.SIAM614_24602+
384765.SIAM614_21587PF02371
384765.SIAM614_21582PF02371
384765.SIAM614_00747PF02371
384765.SIAM614_08948PF02371
384765.SIAM614_31181PF03188
384765.SIAM614_29026+
384765.SIAM614_04580(PF07958)
384765.SIAM614_25217+
384765.SIAM614_30131(PF04143)
384765.SIAM614_19004(PF05292)
384765.SIAM614_14860+
384765.SIAM614_10163(PF13023)
384765.SIAM614_28232+
384765.SIAM614_02866+
384765.SIAM614_30846(PF03480)not used
384765.SIAM614_02491PF02371
384765.SIAM614_28911(PF07364)
384765.SIAM614_16477+
384765.SIAM614_31006+
384765.SIAM614_00899PF02371not used
384765.SIAM614_07268(PF00665)
384765.SIAM614_26568+
384765.SIAM614_01054PF13683
384765.SIAM614_08923PF13683
384765.SIAM614_22717PF02371
384765.SIAM614_02651+
384765.SIAM614_01529(PF01527)
384765.SIAM614_00517(PF01527)
384765.SIAM614_00070(PF01527)
384765.SIAM614_00210(PF01527)
384765.SIAM614_12698(PF00656)
384765.SIAM614_15420+
384765.SIAM614_15425+
384765.SIAM614_00687(PF00665)
384765.SIAM614_22032+
384765.SIAM614_00235PF13683
384765.SIAM614_00230PF02371
384765.SIAM614_02161+
384765.SIAM614_03568+
384765.SIAM614_20201(PF03480)
384765.SIAM614_24252+
384765.SIAM614_19431+
384765.SIAM614_16117+
384765.SIAM614_02141PF02371
384765.SIAM614_14995+
384765.SIAM614_27423PF02371
384765.SIAM614_28297(PF03480)
384765.SIAM614_00547(PF13276)
384765.SIAM614_01766+
384765.SIAM614_26878PF02371
384765.SIAM614_05501PF02371
384765.SIAM614_09168(PF04325)
384765.SIAM614_24562+
384765.SIAM614_13508+
384765.SIAM614_00592(PF01527)
384765.SIAM614_24172(PF03480)
384765.SIAM614_02511(PF01527)
384765.SIAM614_03648+
384765.SIAM614_03643+
384765.SIAM614_11118+
384765.SIAM614_10578+
384765.SIAM614_00412PF13683
384765.SIAM614_14795+
384765.SIAM614_00622(PF00665)
384765.SIAM614_21512(PF01527)
384765.SIAM614_25876+
384765.SIAM614_13953+
384765.SIAM614_02396+
384765.SIAM614_24002+
384765.SIAM614_04570PF02371
384765.SIAM614_16042+
384765.SIAM614_13023+
384765.SIAM614_09603(PF00665)
384765.SIAM614_16512(PF00656)
384765.SIAM614_00452(PF13551)
384765.SIAM614_11998+
384765.SIAM614_22462PF02371
384765.SIAM614_22467PF02371
384765.SIAM614_22687(PF08443)
384765.SIAM614_16727(PF08443)
384765.SIAM614_28543(PF03480)
384765.SIAM614_31131+
384765.SIAM614_02971PF00312
384765.SIAM614_08199PF02371
384765.SIAM614_18679(PF08239)
384765.SIAM614_22162+
384765.SIAM614_13428(PF07364)not used
384765.SIAM614_16557(PF08443)
384765.SIAM614_20525+
384765.SIAM614_06403PF02371
384765.SIAM614_18654(PF03480)
384765.SIAM614_12863+
384765.SIAM614_27882+
384765.SIAM614_00160(PF01527)
384765.SIAM614_00165PF02371
384765.SIAM614_00752PF02371
384765.SIAM614_18639(PF01442)
384765.SIAM614_09578+
384765.SIAM614_02196PF02371
384765.SIAM614_13463(PF07364)
384765.SIAM614_18024+
384765.SIAM614_28716+
384765.SIAM614_20715(PF13495)
384765.SIAM614_01064PF02371

Detailed merged results for each protein sequence

Individual results for each protein sequence

Genome based results

Summary

  • Gram negative: YES (FDR = 0.5 %)
  • Functional Type III secretion system: NO (FDR = 12.5 %)
  • Functional Type IV secretion system: YES (FDR = 7.2 %)
    Estimated copy number = 0.6 (6/10 KEGG proteins)
  • Functional Type VI secretion system: NO (FDR = 7.7 %)

Individual results for each secretion system

Parameters:

==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================