Effective results for Geobacter daltonii FRC-32 (eggnog40)
Summary
Number of putative secreted proteins: 229
- Predicted by T4SEpre: 0
- Predicted by EffectiveELD: 40 eukaryotic-like domains, contained in 229 proteins (3 high, 226 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): (Type VI)
Protein based results
Putative secreted proteins (weak evidence indicated by parentheses)
| Protein | EffectiveT3 | EffectiveCCBD | T4SEpre | EffectiveELD | Predotar |
|---|---|---|---|---|---|
| 316067.Geob_3465 | (PF00432) (PF13243) | ER | |||
| 316067.Geob_1917 | (PF02310) (PF04055) | (mitochondrial) | |||
| 316067.Geob_1902 | (PF13394) (PF04055) | mitochondrial; (mitochondrial) | |||
| 316067.Geob_3649 | (PF02310) (PF04055) | ER | |||
| 316067.Geob_1964 | (PF02310) (PF04055) | (mitochondrial) | |||
| 316067.Geob_0814 | (PF00432) (PF13243) | ER | |||
| 316067.Geob_1618 | (PF07646) (PF01436) | (ER); ER | |||
| 316067.Geob_3467 | (PF12849) | ER | |||
| 316067.Geob_3209 | (PF04055) | (mitochondrial); (plastid) | |||
| 316067.Geob_1356 | (PF12849) | ER | |||
| 316067.Geob_1353 | (PF12849) | ER | |||
| 316067.Geob_0246 | (PF13237) | ER | |||
| 316067.Geob_1690 | (PF04193) | ER | |||
| 316067.Geob_1372 | (PF01436) | ER | |||
| 316067.Geob_1104 | (PF04055) | ER | |||
| 316067.Geob_3089 | (PF13600) | ER | |||
| 316067.Geob_2639 | (PF01436) | ER | |||
| 316067.Geob_1548 | (PF12849) | ER | |||
| 316067.Geob_2154 | (PF16199) (PF04055) | (plastid) | |||
| 316067.Geob_3158 | (PF01436) | ER | |||
| 316067.Geob_3717 | (PF13600) | ER | |||
| 316067.Geob_1149 | (PF02010) | ER | |||
| 316067.Geob_1739 | (PF01436) | (ER) | |||
| 316067.Geob_1997 | (PF12849) | ER | |||
| 316067.Geob_1725 | (PF00050) | ER | |||
| 316067.Geob_3342 | (PF02310) | ER | |||
| 316067.Geob_0057 | (PF05140) | ER | |||
| 316067.Geob_1474 | PF03269 | mitochondrial | |||
| 316067.Geob_1985 | (PF01715) | mitochondrial; (mitochondrial) | |||
| 316067.Geob_1989 | (PF12849) | ER | |||
| 316067.Geob_0918 | (PF13237) | ER | |||
| 316067.Geob_0049 | (PF12849) | ER | |||
| 316067.Geob_0859 | (PF12849) | ER | |||
| 316067.Geob_0664 | (PF04055) | mitochondrial | |||
| 316067.Geob_0068 | (PF03162) | ER | |||
| 316067.Geob_2012 | (PF12849) | ER | |||
| 316067.Geob_1446 | (PF04055) | (mitochondrial) | |||
| 316067.Geob_3783 | (PF00139) | ER | |||
| 316067.Geob_0470 | (PF12838) | (mitochondrial) | |||
| 316067.Geob_0274 | (PF12849) | ER | |||
| 316067.Geob_2311 | (PF02310) (PF04055) | ||||
| 316067.Geob_3665 | (PF13394) (PF04055) | ||||
| 316067.Geob_3685 | (PF02310) (PF04055) | ||||
| 316067.Geob_0262 | (PF00158) | (mitochondrial) | |||
| 316067.Geob_0338 | (PF12899) (PF06202) | ||||
| 316067.Geob_0742 | (PF02550) (PF13336) | ||||
| 316067.Geob_1909 | (PF02310) (PF04055) | ||||
| 316067.Geob_1903 | (PF02310) (PF04055) | ||||
| 316067.Geob_1906 | (PF02310) (PF04055) | ||||
| 316067.Geob_0621 | (PF16199) (PF04055) | ||||
| 316067.Geob_1585 | (PF16199) (PF04055) | ||||
| 316067.Geob_2594 | (PF02550) (PF13336) | ||||
| 316067.Geob_2289 | (PF02310) (PF04055) | ||||
| 316067.Geob_2604 | (PF02550) (PF13336) | ||||
| 316067.Geob_0513 | (PF02550) (PF13336) | ||||
| 316067.Geob_3545 | (PF13394) (PF04055) | ||||
| 316067.Geob_0175 | (PF02550) (PF13336) | ||||
| 316067.Geob_3383 | (PF01739) | mitochondrial | |||
| 316067.Geob_0549 | (PF00158) (PF13187) | ||||
| 316067.Geob_0737 | (PF02310) (PF04055) | ||||
| 316067.Geob_2414 | (PF13394) (PF04055) | ||||
| 316067.Geob_3295 | (PF13394) (PF04055) | ||||
| 316067.Geob_0058 | (PF02310) (PF04055) | ||||
| 316067.Geob_2990 | PF02516 | (mitochondrial) | |||
| 316067.Geob_2195 | (PF02550) (PF13336) | ||||
| 316067.Geob_2194 | (PF02550) (PF13336) | ||||
| 316067.Geob_3339 | (PF02310) (PF04055) | ||||
| 316067.Geob_1662 | (PF02310) (PF04055) | ||||
| 316067.Geob_0670 | (PF13394) (PF04055) | ||||
| 316067.Geob_3136 | (PF04193) | (ER) | |||
| 316067.Geob_0201 | (PF02550) (PF13336) | ||||
| 316067.Geob_0066 | (PF02310) (PF04055) | ||||
| 316067.Geob_1427 | (PF05140) | (ER) | |||
| 316067.Geob_2831 | (PF13394) (PF04055) | ||||
| 316067.Geob_0659 | (PF02310) (PF04055) | ||||
| 316067.Geob_3444 | (PF02915) | ||||
| 316067.Geob_0468 | (PF13237) | ||||
| 316067.Geob_3662 | (PF13243) | ||||
| 316067.Geob_0792 | (PF12838) | ||||
| 316067.Geob_0266 | (PF13394) | ||||
| 316067.Geob_0642 | (PF03016) | ||||
| 316067.Geob_2812 | (PF11523) | ||||
| 316067.Geob_2491 | (PF00148) | ||||
| 316067.Geob_0126 | (PF12838) | ||||
| 316067.Geob_0533 | (PF00158) | ||||
| 316067.Geob_2072 | (PF13187) | ||||
| 316067.Geob_0128 | (PF00158) | ||||
| 316067.Geob_3079 | (PF00158) | ||||
| 316067.Geob_0417 | (PF04055) | ||||
| 316067.Geob_0418 | (PF04055) | ||||
| 316067.Geob_3473 | (PF04055) | ||||
| 316067.Geob_3475 | (PF12038) | ||||
| 316067.Geob_3692 | (PF00158) | ||||
| 316067.Geob_3697 | (PF01739) | ||||
| 316067.Geob_3211 | (PF00158) | ||||
| 316067.Geob_0231 | (PF12838) | ||||
| 316067.Geob_0251 | (PF13187) | ||||
| 316067.Geob_1201 | (PF12838) | ||||
| 316067.Geob_2482 | (PF12838) | ||||
| 316067.Geob_2247 | (PF00158) | ||||
| 316067.Geob_2665 | (PF13187) | ||||
| 316067.Geob_0757 | (PF03144) | ||||
| 316067.Geob_1371 | (PF00158) | ||||
| 316067.Geob_1376 | (PF12838) | ||||
| 316067.Geob_1978 | (PF04055) | ||||
| 316067.Geob_1975 | (PF02915) | ||||
| 316067.Geob_2581 | (PF00148) | ||||
| 316067.Geob_1808 | (PF12838) | ||||
| 316067.Geob_0145 | (PF00158) | ||||
| 316067.Geob_3234 | (PF13243) | ||||
| 316067.Geob_0183 | (PF10142) | ||||
| 316067.Geob_1741 | (PF00158) | ||||
| 316067.Geob_0963 | (PF05189) | ||||
| 316067.Geob_1365 | (PF02310) | ||||
| 316067.Geob_1965 | (PF04055) | ||||
| 316067.Geob_2591 | (PF04055) | ||||
| 316067.Geob_2461 | (PF00148) | ||||
| 316067.Geob_2460 | (PF00148) | ||||
| 316067.Geob_2467 | (PF00148) | ||||
| 316067.Geob_2466 | (PF00148) | ||||
| 316067.Geob_2269 | (PF01739) | ||||
| 316067.Geob_2603 | (PF00158) | ||||
| 316067.Geob_2737 | (PF02594) | ||||
| 316067.Geob_2722 | (PF02594) | ||||
| 316067.Geob_2456 | (PF04055) | ||||
| 316067.Geob_2450 | (PF04055) | ||||
| 316067.Geob_2451 | (PF00158) | ||||
| 316067.Geob_1823 | (PF00158) | ||||
| 316067.Geob_3729 | (PF03144) | ||||
| 316067.Geob_3723 | (PF12838) | ||||
| 316067.Geob_0168 | (PF00158) | ||||
| 316067.Geob_0362 | (PF03063) | ||||
| 316067.Geob_0014 | (PF04055) | ||||
| 316067.Geob_1381 | (PF00158) | ||||
| 316067.Geob_2441 | (PF00158) | ||||
| 316067.Geob_2440 | (PF04055) | ||||
| 316067.Geob_1796 | (PF02594) | ||||
| 316067.Geob_3397 | (PF00158) | ||||
| 316067.Geob_3370 | (PF00158) | ||||
| 316067.Geob_0176 | (PF00158) | ||||
| 316067.Geob_0375 | (PF12838) | ||||
| 316067.Geob_0373 | (PF00025) | ||||
| 316067.Geob_1623 | (PF13187) | not used | |||
| 316067.Geob_2946 | (PF00158) | ||||
| 316067.Geob_1845 | (PF01739) | ||||
| 316067.Geob_2540 | (PF00148) | ||||
| 316067.Geob_2541 | (PF02310) | ||||
| 316067.Geob_3238 | (PF06202) | ||||
| 316067.Geob_2389 | (PF00025) | ||||
| 316067.Geob_2386 | (PF03144) | ||||
| 316067.Geob_2768 | (PF00158) | ||||
| 316067.Geob_2166 | (PF01739) | ||||
| 316067.Geob_3389 | (PF00158) | ||||
| 316067.Geob_3381 | (PF01739) | ||||
| 316067.Geob_3142 | (PF02310) | ||||
| 316067.Geob_3709 | (PF01739) | ||||
| 316067.Geob_0148 | (PF00158) | ||||
| 316067.Geob_0143 | (PF00158) | ||||
| 316067.Geob_1633 | (PF00158) | ||||
| 316067.Geob_1630 | (PF04055) | ||||
| 316067.Geob_0927 | (PF01739) | ||||
| 316067.Geob_0920 | (PF04055) | ||||
| 316067.Geob_1529 | (PF00158) | ||||
| 316067.Geob_2178 | (PF04055) | ||||
| 316067.Geob_3286 | (PF03144) | ||||
| 316067.Geob_0557 | (PF01739) | ||||
| 316067.Geob_3352 | (PF04055) | ||||
| 316067.Geob_3821 | (PF03144) | ||||
| 316067.Geob_3824 | (PF02915) | ||||
| 316067.Geob_3827 | (PF00158) | ||||
| 316067.Geob_0800 | (PF12838) | ||||
| 316067.Geob_0806 | (PF03144) | ||||
| 316067.Geob_1608 | (PF13237) | ||||
| 316067.Geob_1600 | (PF00158) | ||||
| 316067.Geob_1046 | (PF03063) | ||||
| 316067.Geob_2412 | (PF04055) | ||||
| 316067.Geob_2561 | (PF00158) | ||||
| 316067.Geob_2189 | (PF00158) | ||||
| 316067.Geob_1726 | (PF00847) | ||||
| 316067.Geob_1720 | (PF00158) | ||||
| 316067.Geob_3345 | (PF05140) | ||||
| 316067.Geob_1617 | (PF03063) | ||||
| 316067.Geob_3830 | (PF01739) | ||||
| 316067.Geob_0234 | (PF13187) | ||||
| 316067.Geob_0235 | (PF12838) | ||||
| 316067.Geob_1293 | (PF04055) | ||||
| 316067.Geob_2575 | (PF00148) | ||||
| 316067.Geob_2577 | (PF00148) | ||||
| 316067.Geob_3027 | (PF02915) | ||||
| 316067.Geob_3628 | (PF03144) | ||||
| 316067.Geob_3627 | (PF03144) | ||||
| 316067.Geob_0222 | (PF00158) | ||||
| 316067.Geob_1082 | (PF02915) | ||||
| 316067.Geob_1884 | (PF12838) | ||||
| 316067.Geob_2500 | (PF00148) | ||||
| 316067.Geob_2501 | (PF00148) | ||||
| 316067.Geob_3107 | (PF01715) | ||||
| 316067.Geob_3327 | (PF04055) | ||||
| 316067.Geob_3257 | (PF04055) | ||||
| 316067.Geob_0218 | (PF13187) | ||||
| 316067.Geob_0219 | (PF12838) | ||||
| 316067.Geob_0215 | (PF12838) | ||||
| 316067.Geob_0852 | (PF00158) | ||||
| 316067.Geob_1270 | (PF12838) | ||||
| 316067.Geob_0077 | (PF00158) | ||||
| 316067.Geob_2510 | (PF13237) | ||||
| 316067.Geob_2333 | (PF00158) | ||||
| 316067.Geob_3008 | (PF04055) | ||||
| 316067.Geob_3640 | (PF03144) | ||||
| 316067.Geob_3641 | (PF04055) | ||||
| 316067.Geob_3267 | (PF04055) | ||||
| 316067.Geob_0662 | (PF04055) | ||||
| 316067.Geob_0669 | (PF04055) | ||||
| 316067.Geob_1240 | (PF04055) | ||||
| 316067.Geob_1424 | PF02516 | ||||
| 316067.Geob_2781 | (PF04055) | ||||
| 316067.Geob_3789 | (PF01739) | ||||
| 316067.Geob_3787 | (PF02915) | ||||
| 316067.Geob_3499 | (PF00158) | ||||
| 316067.Geob_3309 | (PF00432) | ||||
| 316067.Geob_3658 | (PF03144) | ||||
| 316067.Geob_0787 | (PF04055) | ||||
| 316067.Geob_3279 | (PF13187) | ||||
| 316067.Geob_0308 | (PF03063) | ||||
| 316067.Geob_1785 | (PF00158) | ||||
| 316067.Geob_1320 | (PF04055) | ||||
| 316067.Geob_2539 | (PF00148) | ||||
| 316067.Geob_1924 | (PF06202) | ||||
| 316067.Geob_2228 | (PF00158) |
Detailed merged results for each protein sequence
- Detailed merged results as table (merge_results.html)
- Detailed merged results as tab delimited file (merge_results.csv)
Individual results for each protein sequence
- EffectiveELD predictions (PROTEINS.ELD.TXT)
- Predotar predictions using animal/human model (Predotar_output_modelANIMAL.TXT)
- Predotar predictions using plant model (Predotar_output_modelPLANT.TXT)
Genome based results
Summary
- Gram negative: YES (FDR = 0.5 %)
- Functional Type III secretion system: NO (FDR = 12.5 %)
- Functional Type IV secretion system: NO (FDR = 7.2 %)
- Functional Type VI secretion system: YES (FDR = 7.7 %)
Estimated copy number = 0.125 (1/8 KEGG proteins)
Individual results for each secretion system
- List of 100 most important COGs/NOGs for prediction of functional Type III secretion system (T3_top100_COGS.xls)
- List of 100 most important COGs/NOGs for prediction of functional Type IV secretion system (T4_top100_COGS.xls)
- List of 100 most important COGs/NOGs for prediction of functional Type VI secretion system (T6_top100_COGS.xls)
- List of COGs assigned to Type III secretion system in KEGG (T3SS_KEGG_cmp.xls)
- List of COGs assigned to Type IV secretion system in KEGG (T4SS_KEGG_cmp.xls)
- List of COGs assigned to Type VI secretion system in KEGG (T6SS_KEGG_cmp.xls)
Parameters:
==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================
Estimated copy number = 0.125 (1/8 KEGG proteins)
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