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Genomes encoding eukaryotic-like proteins

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PF13237 4Fe-4S dicluster domain

Copy number in non-pathogens:
Mean=0.46 Stddev=0.98

Genomes significantly enriched in this eukaryotic-like domain (ELD; score >= 4):

Genome Class* ELD score Number of proteins containing this domain
bacterium MS4 s 6 7
bacterium MS4 s 6 7
Clostridioides difficile s 5 6
Acetomicrobium hydrogeniformans ATCC BAA-1850 s 4 5
Clostridium sp. 1_1_41A1FAA s 4 5
[Clostridium] bolteae WAL-14578 s 4 5
[Clostridium] bolteae ATCC BAA-613 s 4 5
Desulfotomaculum ruminis DSM 2154 s 5 6
Pelosinus fermentans DSM 17108 s 5 6
Sporomusa ovata DSM 2662 s 4 5
Desulfovibrio zosterae DSM 11974 s 6 7
Ruminococcus gauvreauii DSM 19829 s 4 5
Clostridiales bacterium 1_7_47FAA s 6 7
Acetonema longum DSM 6540 s 4 5
Sporomusa ovata DSM 2662 s 4 5
[Clostridium] termitidis CT1112 s 4 5
[Clostridium] bolteae 90B7 s 4 5
[Clostridium] bolteae 90A5 s 4 5
Clostridium ljungdahlii DSM 13528 s 5 6
Synergistes jonesii s 5 6
[Clostridium] cellobioparum DSM 1351 = ATCC 15832 s 4 5
Blautia schinkii DSM 10518 s 5 6
Synergistes jonesii s 4 5
Eubacterium limosum s 4 5
Clostridium ljungdahlii DSM 13528 s 5 6
Oxobacter pfennigii s 4 5
Desulfomicrobium orale DSM 12838 s 4 5
Cloacibacillus porcorum s 4 5

*p=pathogen;s=symbiont

Release announcements

News

  • EffectiveDB genome mode fixed

    24.11.20
  • EFFECTIVEELD 5.2: EUKARYOTIC-LIKE DOMAIN PREDICTION UPGRADED TO PFAM 31

    20.08.17
  • EffectiveELD 5.1: Eukaryotic-like domain prediction upgraded to Pfam 29

    24.06.16

Latest publications

  • EffectiveDB-updates and novel features for a better annotation of bacterial secreted proteins and Type III, IV, VI secretion systems.
  • Prediction of microbial phenotypes based on comparative genomics.

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