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Genomes encoding eukaryotic-like proteins

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PF00025 ADP-ribosylation factor family

Copy number in non-pathogens:
Mean=0.03 Stddev=0.21

Genomes significantly enriched in this eukaryotic-like domain (ELD; score >= 4):

Genome Class* ELD score Number of proteins containing this domain
Prevotella loescheii DSM 19665 = JCM 12249 = ATCC 15930 s 4 1
Verrucomicrobium sp. BvORR034 s 4 1
Verrucomicrobium sp. BvORR106 s 4 1
Deinococcus grandis s 4 1
Porphyromonas gingivalis s 4 1
Porphyromonas gingivalis s 4 1
Chthoniobacter flavus Ellin428 s 4 1
Deinococcus proteolyticus MRP s 4 1
Aeromicrobium marinum DSM 15272 s 4 1
Prevotella sp. oral taxon 472 str. F0295 s 4 1
Stigmatella aurantiaca DW4/3-1 s 9 2
Prevotella loescheii DSM 19665 = JCM 12249 = ATCC 15930 s 4 1
Deinococcus ficus DSM 19119 s 9 2
Gramella echinicola DSM 19838 s 4 1
Stigmatella aurantiaca DW4/3-1 s 9 2
Prevotella loescheii DSM 19665 = JCM 12249 = ATCC 15930 s 4 1
Pseudomonas aeruginosa s 4 1
Dichelobacter nodosus s 4 1
Pseudomonas fluorescens s 4 1
Moraxella catarrhalis s 4 1
Legionella birminghamensis s 4 1
Acinetobacter baumannii s 4 1
Acinetobacter baumannii s 4 1
Haemophilus parainfluenzae s 4 1
Stigmatella aurantiaca s 9 2
Pseudomonas fluorescens s 4 1
Pseudomonas aeruginosa s 4 1

*p=pathogen;s=symbiont

Release announcements

News

  • EffectiveDB genome mode fixed

    24.11.20
  • EFFECTIVEELD 5.2: EUKARYOTIC-LIKE DOMAIN PREDICTION UPGRADED TO PFAM 31

    20.08.17
  • EffectiveELD 5.1: Eukaryotic-like domain prediction upgraded to Pfam 29

    24.06.16

Latest publications

  • EffectiveDB-updates and novel features for a better annotation of bacterial secreted proteins and Type III, IV, VI secretion systems.
  • Prediction of microbial phenotypes based on comparative genomics.

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