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Genomes encoding eukaryotic-like proteins

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PF12038 Domain of unknown function (DUF3524)

Copy number in non-pathogens:
Mean=0.03 Stddev=0.17

Genomes significantly enriched in this eukaryotic-like domain (ELD; score >= 4):

Genome Class* ELD score Number of proteins containing this domain
Marinomonas posidonica IVIA-Po-181 s 5 1
Teredinibacter turnerae T7902 s 5 1
Teredinibacter turnerae T8602 s 5 1
Endozoicomonas elysicola DSM 22380 s 5 1
Marinobacterium rhizophilum DSM 18822 s 5 1
Teredinibacter turnerae T8415 s 5 1
Teredinibacter turnerae T0609 s 5 1
Microbulbifer variabilis ATCC 700307 s 5 1
Halomonas zhanjiangensis DSM 21076 s 5 1
Halomonas stevensii S18214 s 5 1
Marinomonas sp. MWYL1 s 5 1
Teredinibacter turnerae T7901 s 5 1
Alteromonadaceae bacterium Bs12 s 5 1
Alteromonadaceae bacterium Bs31 s 5 1
Teredinibacter sp. 991H.S.0a.06 s 5 1
Endozoicomonas elysicola s 5 1
Endozoicomonas montiporae s 5 1
Endozoicomonas numazuensis s 5 1
Halomonas meridiana s 5 1
Thalassomonas viridans s 5 1
Endozoicomonas arenosclerae s 5 1
Halomonas meridiana s 5 1
Halomonas meridiana s 5 1
Halomonas meridiana s 5 1
Microbulbifer agarilyticus s 5 1
Kushneria sp. X49 s 5 1

*p=pathogen;s=symbiont

Release announcements

News

  • EffectiveDB genome mode fixed

    24.11.20
  • EFFECTIVEELD 5.2: EUKARYOTIC-LIKE DOMAIN PREDICTION UPGRADED TO PFAM 31

    20.08.17
  • EffectiveELD 5.1: Eukaryotic-like domain prediction upgraded to Pfam 29

    24.06.16

Latest publications

  • EffectiveDB-updates and novel features for a better annotation of bacterial secreted proteins and Type III, IV, VI secretion systems.
  • Prediction of microbial phenotypes based on comparative genomics.

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