Metamenu

Effective results for Blastopirellula marina DSM 3645 (eggnog40)

Summary

Number of putative secreted proteins: 394
- Predicted by T4SEpre: 0
- Predicted by EffectiveELD: 55 eukaryotic-like domains, contained in 394 proteins (71 high, 323 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): Type VI

Protein based results

Putative secreted proteins (weak evidence indicated by parentheses)

ProteinEffectiveT3EffectiveCCBDT4SEpreEffectiveELDPredotar
314230.DSM3645_11417(PF06283) (PF08305) (PF00034) PF06439ER
314230.DSM3645_13455(PF13646) (PF06283) (PF00034)ER
314230.DSM3645_12961(PF06283) (PF00034)ER
314230.DSM3645_06159(PF00884) (PF16347)ER
314230.DSM3645_26264(PF13646) (PF00034)(mitochondrial)
314230.DSM3645_25749PF13481 (PF00772)mitochondrial
314230.DSM3645_24195(PF00884) (PF16347)ER
314230.DSM3645_17670PF13481 (PF00772)mitochondrial
314230.DSM3645_12741(PF13646) (PF00034)ER
314230.DSM3645_26439(PF13646) (PF00034)ER
314230.DSM3645_28567(PF00884) (PF16347)ER
314230.DSM3645_26064(PF13646) (PF13385)ER
314230.DSM3645_26609(PF13385) (PF06283)ER
314230.DSM3645_07470(PF13646) (PF00034)ER
314230.DSM3645_11831PF00432 (PF13243)mitochondrial
314230.DSM3645_24670(PF13646) (PF00034)ER
314230.DSM3645_11237(PF00884) (PF16347)ER
314230.DSM3645_14090(PF06283) PF06439ER
314230.DSM3645_01215(PF13180) (PF08305)ER
314230.DSM3645_05820PF13481 (PF00772)mitochondrial
314230.DSM3645_00220(PF00884) (PF16347)ER
314230.DSM3645_10277(PF13646) (PF00034)ER
314230.DSM3645_06014(PF00884) (PF16347)(ER); plastid
314230.DSM3645_13465(PF13646) (PF00034)ER
314230.DSM3645_06464PF13481 (PF00772)mitochondrial
314230.DSM3645_29486(PF01062)(mitochondrial)
314230.DSM3645_23416(PF00884)ER
314230.DSM3645_11167(PF13180)ER
314230.DSM3645_10172PF13088ER
314230.DSM3645_11377(PF00034)ER
314230.DSM3645_26449(PF00884)(ER)
314230.DSM3645_23196(PF12831)ER
314230.DSM3645_13098(PF00884)(mitochondrial); (ER)
314230.DSM3645_02158(PF00884)ER
314230.DSM3645_17690(PF13360)ER
314230.DSM3645_24982PF00432ER
314230.DSM3645_13395PF06439ER
314230.DSM3645_12426(PF01609)mitochondrial
314230.DSM3645_26039PF13088ER
314230.DSM3645_01796PF03983ER
314230.DSM3645_08166(PF13360)(ER)
314230.DSM3645_18721(PF16387)ER
314230.DSM3645_23226(PF13360)ER
314230.DSM3645_21092(PF00884)ER
314230.DSM3645_18551(PF00701)mitochondrial; (mitochondrial)
314230.DSM3645_18556PF13088ER
314230.DSM3645_10007PF03983ER
314230.DSM3645_09722(PF00884)ER
314230.DSM3645_23076(PF13360)ER
314230.DSM3645_17931(PF00884)ER
314230.DSM3645_25091(PF13385)ER
314230.DSM3645_12371PF13481(mitochondrial)
314230.DSM3645_22671PF06439ER
314230.DSM3645_08647(PF13519)ER
314230.DSM3645_25327PF06439ER
314230.DSM3645_02253(PF00034)ER
314230.DSM3645_20972(PF00884)ER
314230.DSM3645_25512PF12580ER
314230.DSM3645_19413(PF01408)mitochondrial; (mitochondrial)
314230.DSM3645_27578PF15636mitochondrial
314230.DSM3645_04410(PF13360)ER
314230.DSM3645_01936(PF00884)ER
314230.DSM3645_07146(PF13180)ER
314230.DSM3645_13925(PF13180)ER
314230.DSM3645_22946(PF13180)ER
314230.DSM3645_17360PF13481(mitochondrial)
314230.DSM3645_00850(PF10142)ER
314230.DSM3645_14140PF06439ER
314230.DSM3645_13690(PF12831)(ER)
314230.DSM3645_09217(PF00884)ER
314230.DSM3645_01876(PF13646)ER
314230.DSM3645_14085(PF06283)ER
314230.DSM3645_20037(PF01609)mitochondrial
314230.DSM3645_12486(PF13360)ER
314230.DSM3645_03568(PF13180)ER
314230.DSM3645_15450(PF13646)ER
314230.DSM3645_18331PF13088ER
314230.DSM3645_15210(PF02709)(ER)
314230.DSM3645_20192(PF13360)ER
314230.DSM3645_15865(PF00884)ER
314230.DSM3645_01851(PF00034)ER
314230.DSM3645_12841(PF00884)ER
314230.DSM3645_02313PF13088ER
314230.DSM3645_13138PF06439ER
314230.DSM3645_20612PF06439ER; (ER)
314230.DSM3645_26904(PF13519)(ER)
314230.DSM3645_18601(PF00701)(ER)
314230.DSM3645_23501(PF00884)ER
314230.DSM3645_11382(PF00884) (PF16347)(plastid)
314230.DSM3645_01831(PF00884)ER
314230.DSM3645_19838PF06439ER
314230.DSM3645_11367(PF00884)ER
314230.DSM3645_02338(PF00884) (PF16347)(mitochondrial)
314230.DSM3645_07316(PF13385)ER
314230.DSM3645_12551(PF13360)ER
314230.DSM3645_14810(PF13360)ER
314230.DSM3645_10012PF03983ER
314230.DSM3645_23526(PF00060)ER
314230.DSM3645_23521(PF00060)ER
314230.DSM3645_15535(PF00884)ER
314230.DSM3645_10837(PF06283)ER
314230.DSM3645_19703(PF13180)ER; (ER)
314230.DSM3645_12766(PF13646)ER
314230.DSM3645_14640(PF01609)mitochondrial
314230.DSM3645_21462(PF06283)ER
314230.DSM3645_29651(PF13646) PF13088(ER)
314230.DSM3645_10937(PF00034)ER
314230.DSM3645_24130PF03983ER
314230.DSM3645_18581PF13088ER
314230.DSM3645_24917(PF08305)ER
314230.DSM3645_24912(PF13180)(ER)
314230.DSM3645_20802PF06439ER
314230.DSM3645_26364(PF13646)ER; (ER)
314230.DSM3645_00530(PF01408)(ER)
314230.DSM3645_26644(PF13646)ER
314230.DSM3645_29376(PF01408)mitochondrial; (mitochondrial)
314230.DSM3645_13475PF13481(mitochondrial)
314230.DSM3645_21427PF06439ER
314230.DSM3645_22439(PF01408)mitochondrial
314230.DSM3645_18271(PF12894)ER
314230.DSM3645_26669(PF13519)ER
314230.DSM3645_21392(PF12831)ER
314230.DSM3645_06184(PF01609)mitochondrial
314230.DSM3645_25649(PF01609)(mitochondrial)
314230.DSM3645_19598(PF13360)ER
314230.DSM3645_01465(PF13360)ER
314230.DSM3645_25924(PF01408)(mitochondrial); (ER)
314230.DSM3645_01685PF13088ER
314230.DSM3645_23401PF13481(mitochondrial)
314230.DSM3645_12411(PF13360)ER
314230.DSM3645_24275(PF13385)ER; (ER)
314230.DSM3645_17085(PF13180)(mitochondrial)
314230.DSM3645_13143(PF12831)(mitochondrial)
314230.DSM3645_01791(PF00034)ER; (ER)
314230.DSM3645_21689(PF01609)(ER)
314230.DSM3645_07475(PF13646)ER
314230.DSM3645_18381(PF13180)ER
314230.DSM3645_08171(PF00034)ER
314230.DSM3645_20337PF00432(ER)
314230.DSM3645_23786(PF01609)(ER)
314230.DSM3645_19638(PF08305)ER
314230.DSM3645_19633(PF13243)ER
314230.DSM3645_21087(PF00034)ER
314230.DSM3645_20562PF06439ER
314230.DSM3645_19613(PF13519)ER
314230.DSM3645_05929(PF13360)ER
314230.DSM3645_19403PF06439ER
314230.DSM3645_29296(PF02275)ER
314230.DSM3645_05150(PF13646)ER
314230.DSM3645_11402(PF00034)ER
314230.DSM3645_13328(PF00034)ER
314230.DSM3645_18446PF06439ER
314230.DSM3645_14770(PF00884)(mitochondrial)
314230.DSM3645_24005(PF13360)ER
314230.DSM3645_26394(PF09825)(mitochondrial)
314230.DSM3645_08025PF06439mitochondrial
314230.DSM3645_12491(PF13360)ER
314230.DSM3645_16975(PF01609)mitochondrial
314230.DSM3645_26704(PF13519)ER
314230.DSM3645_20627(PF13360)ER
314230.DSM3645_04800(PF07678)ER
314230.DSM3645_17981(PF13768)ER
314230.DSM3645_14985(PF00884)(ER)
314230.DSM3645_25252(PF01609)ER
314230.DSM3645_00805(PF00884)ER
314230.DSM3645_24615(PF10162)(ER); ER
314230.DSM3645_06094(PF13519)(ER)
314230.DSM3645_08632(PF13519)ER
314230.DSM3645_07116(PF13646)ER
314230.DSM3645_06244PF13088ER
314230.DSM3645_02096PF06439ER
314230.DSM3645_26134(PF01609)mitochondrial
314230.DSM3645_25116PF06439ER
314230.DSM3645_01025(PF00884)ER
314230.DSM3645_20667(PF13180)ER
314230.DSM3645_06324(PF13360)ER
314230.DSM3645_05795(PF13360)ER
314230.DSM3645_26339PF06439ER
314230.DSM3645_24160(PF00701)(ER)
314230.DSM3645_03533(PF01408)mitochondrial
314230.DSM3645_21272(PF12894)ER
314230.DSM3645_14350(PF00034)ER
314230.DSM3645_27448PF06439ER
314230.DSM3645_19478(PF00884)ER
314230.DSM3645_11242(PF13360)ER
314230.DSM3645_29661PF13088ER
314230.DSM3645_29401(PF13360)ER
314230.DSM3645_28757PF06439ER
314230.DSM3645_24145(PF00884)ER
314230.DSM3645_28922PF03118(mitochondrial)
314230.DSM3645_04730(PF01408)(mitochondrial)
314230.DSM3645_19508(PF00032)(ER)
314230.DSM3645_18826(PF00884)ER
314230.DSM3645_06956PF06439mitochondrial
314230.DSM3645_08081(PF01408)mitochondrial
314230.DSM3645_10907(PF08305)ER
314230.DSM3645_10902(PF01847)ER
314230.DSM3645_16665(PF00034)ER
314230.DSM3645_30216(PF01062)(ER); ER
314230.DSM3645_24902(PF13180)ER
314230.DSM3645_26354(PF06283)ER
314230.DSM3645_05095(PF02275)mitochondrial; ER
314230.DSM3645_24100(PF00884)ER
314230.DSM3645_21604(PF02033)mitochondrial
314230.DSM3645_29381(PF01408)ER
314230.DSM3645_13860(PF13360)ER
314230.DSM3645_18261(PF13360)ER
314230.DSM3645_17225(PF06283)ER
314230.DSM3645_01085(PF00884)ER
314230.DSM3645_15115(PF01609)(ER)
314230.DSM3645_20707(PF00032) (PF00033)
314230.DSM3645_26289(PF01408)(mitochondrial)
314230.DSM3645_27453(PF01408)plastid
314230.DSM3645_05315(PF00884) (PF16347)
314230.DSM3645_14280PF00432plastid
314230.DSM3645_26804(PF01408)(ER)
314230.DSM3645_21307(PF13519)(ER)
314230.DSM3645_06114(PF01408)(ER)
314230.DSM3645_09727(PF12831)(ER)
314230.DSM3645_14910(PF00059) PF06439
314230.DSM3645_18316(PF00884) (PF16347)
314230.DSM3645_14330(PF13243)plastid
314230.DSM3645_08010PF13481 (PF00772)
314230.DSM3645_29476(PF09861)(mitochondrial)
314230.DSM3645_14040(PF02709)(plastid)
314230.DSM3645_19503(PF00033)(plastid)
314230.DSM3645_05285(PF01408)(plastid)
314230.DSM3645_28167(PF01609)(mitochondrial)
314230.DSM3645_24650(PF13646)(mitochondrial)
314230.DSM3645_11567(PF01477)(ER)
314230.DSM3645_13298(PF00033) (PF00032)
314230.DSM3645_03513(PF00884)(plastid)
314230.DSM3645_24907(PF13180)(plastid)
314230.DSM3645_26359(PF13646) (PF00034)
314230.DSM3645_27927(PF01408)(mitochondrial)
314230.DSM3645_06619(PF01408)mitochondrial
314230.DSM3645_26469(PF13385)
314230.DSM3645_06074(PF07726)
314230.DSM3645_10567(PF13180)
314230.DSM3645_18186(PF01609)
314230.DSM3645_17095(PF13360)
314230.DSM3645_14285(PF07726)
314230.DSM3645_27041(PF13360)
314230.DSM3645_21077(PF01609)
314230.DSM3645_18951PF00432
314230.DSM3645_12966(PF01408)
314230.DSM3645_26034(PF00701)
314230.DSM3645_23016(PF13646)
314230.DSM3645_17440(PF00701)
314230.DSM3645_19603(PF07726)
314230.DSM3645_18916(PF13243)
314230.DSM3645_00080PF09239
314230.DSM3645_15880(PF13180)
314230.DSM3645_18451PF06439
314230.DSM3645_13480(PF00884)
314230.DSM3645_05939(PF09861)
314230.DSM3645_08752(PF00772)
314230.DSM3645_26739(PF00701)
314230.DSM3645_05165(PF13360)
314230.DSM3645_28152(PF01609)
314230.DSM3645_14160PF03983
314230.DSM3645_10097(PF01408)
314230.DSM3645_26884(PF07726)
314230.DSM3645_10667(PF01408)not used
314230.DSM3645_00855(PF04450)
314230.DSM3645_22711PF03118
314230.DSM3645_04835PF13481
314230.DSM3645_25492(PF01408)
314230.DSM3645_26524PF13088
314230.DSM3645_17991(PF00034)
314230.DSM3645_17140(PF01062)
314230.DSM3645_25262(PF13385)
314230.DSM3645_24605(PF13646)
314230.DSM3645_22369(PF12831)
314230.DSM3645_06314(PF10143)
314230.DSM3645_27673(PF07726)
314230.DSM3645_00020(PF13429)
314230.DSM3645_29451PF16940
314230.DSM3645_20467(PF13646)
314230.DSM3645_02318(PF00701)
314230.DSM3645_26839(PF00701)
314230.DSM3645_26714(PF07726)
314230.DSM3645_25592(PF13360)
314230.DSM3645_00765(PF01609)
314230.DSM3645_25402(PF12006)
314230.DSM3645_10957(PF13385)
314230.DSM3645_10482(PF01408)
314230.DSM3645_05665(PF13180)
314230.DSM3645_29087(PF00701)
314230.DSM3645_26944PF13481not used
314230.DSM3645_20132(PF10143)
314230.DSM3645_19513(PF00034)
314230.DSM3645_27306(PF01408)
314230.DSM3645_02066PF13481
314230.DSM3645_29656(PF00701)
314230.DSM3645_26164(PF01609)
314230.DSM3645_06584(PF13768)
314230.DSM3645_11512(PF13385)
314230.DSM3645_21247(PF05090)
314230.DSM3645_28397(PF01609)
314230.DSM3645_24832(PF01408)
314230.DSM3645_22434(PF00701)
314230.DSM3645_07495(PF13646)
314230.DSM3645_27763(PF13385)
314230.DSM3645_16020(PF01609)
314230.DSM3645_28047(PF01609)
314230.DSM3645_19918(PF01609)
314230.DSM3645_18526(PF13646)
314230.DSM3645_25644(PF01408)
314230.DSM3645_21629(PF01609)
314230.DSM3645_25007(PF13360)
314230.DSM3645_15105(PF01609)
314230.DSM3645_07370PF13813
314230.DSM3645_17080(PF13180)
314230.DSM3645_17010(PF12006)
314230.DSM3645_08367PF03118
314230.DSM3645_14925(PF00701)
314230.DSM3645_12381(PF12831)
314230.DSM3645_18176(PF00034)
314230.DSM3645_18171(PF01408)
314230.DSM3645_18716(PF13385)
314230.DSM3645_27528(PF01609)
314230.DSM3645_23231(PF01408)
314230.DSM3645_09162(PF09861)
314230.DSM3645_28122(PF13910)
314230.DSM3645_01966(PF00034)
314230.DSM3645_02128(PF00701)
314230.DSM3645_22661(PF13180)
314230.DSM3645_18736(PF05090)
314230.DSM3645_06104(PF13360)
314230.DSM3645_14345(PF13385)
314230.DSM3645_04425(PF06283)
314230.DSM3645_09922(PF01408)
314230.DSM3645_02243(PF05090)
314230.DSM3645_26996(PF00701)
314230.DSM3645_19453(PF02275)
314230.DSM3645_18136(PF13429)
314230.DSM3645_26219(PF12831)
314230.DSM3645_08387(PF00884)
314230.DSM3645_25679(PF13180)
314230.DSM3645_05710(PF13385)
314230.DSM3645_14945(PF01408)
314230.DSM3645_25292(PF01609)
314230.DSM3645_08677(PF12831)
314230.DSM3645_28117(PF01609)
314230.DSM3645_15220(PF02709)
314230.DSM3645_00075PF04406
314230.DSM3645_25277(PF01609)
314230.DSM3645_09527(PF13646)
314230.DSM3645_05190(PF07726)
314230.DSM3645_10102(PF13385)
314230.DSM3645_05755(PF13360)
314230.DSM3645_02988(PF01609)
314230.DSM3645_08637(PF07726)
314230.DSM3645_28982PF00432
314230.DSM3645_18616(PF01408)
314230.DSM3645_16675(PF01062)
314230.DSM3645_22339(PF02033)
314230.DSM3645_14860(PF13385)
314230.DSM3645_24967(PF13360)
314230.DSM3645_24962(PF07726)
314230.DSM3645_05825(PF14792)
314230.DSM3645_05790PF03118
314230.DSM3645_27463(PF01609)
314230.DSM3645_26334PF06439
314230.DSM3645_21457(PF00034)
314230.DSM3645_24887(PF01408)
314230.DSM3645_20647(PF09861)
314230.DSM3645_04195(PF13385)
314230.DSM3645_01801(PF07726)
314230.DSM3645_19868(PF01408)
314230.DSM3645_29301(PF01408)
314230.DSM3645_23496(PF00884)
314230.DSM3645_15995PF13481
314230.DSM3645_22991(PF01408)
314230.DSM3645_24125PF03983
314230.DSM3645_23476(PF00701)
314230.DSM3645_19318(PF13768)
314230.DSM3645_29626(PF01408)
314230.DSM3645_28572(PF04765)
314230.DSM3645_23131(PF08305)
314230.DSM3645_18206(PF00884)
314230.DSM3645_07925(PF01408)
314230.DSM3645_27121(PF01609)
314230.DSM3645_05370(PF07726)
314230.DSM3645_13445(PF13360)
314230.DSM3645_26869(PF12894)
314230.DSM3645_07485(PF01408)
314230.DSM3645_16575PF06439
314230.DSM3645_23381(PF01609)
314230.DSM3645_26679(PF07726)
314230.DSM3645_17425(PF13243)
314230.DSM3645_26844(PF12831)
314230.DSM3645_11352(PF01609)

Detailed merged results for each protein sequence

Individual results for each protein sequence

Genome based results

Summary

  • Gram negative: YES (FDR = 0.5 %)
  • Functional Type III secretion system: NO (FDR = 12.5 %)
  • Functional Type IV secretion system: NO (FDR = 7.2 %)
  • Functional Type VI secretion system: YES (FDR = 7.7 %)
    Estimated copy number = 5.5 (44/8 KEGG proteins)

Individual results for each secretion system

Parameters:

==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================