Metamenu

Effective results for Pseudopedobacter saltans DSM 12145 (eggnog40)

Summary

Number of putative secreted proteins: 168
- Predicted by T4SEpre: 0
- Predicted by EffectiveELD: 51 eukaryotic-like domains, contained in 168 proteins (50 high, 118 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): None

Protein based results

Putative secreted proteins (weak evidence indicated by parentheses)

ProteinEffectiveT3EffectiveCCBDT4SEpreEffectiveELDPredotar
762903.Pedsa_0299(PF11721) (PF00703) (PF02837) (PF16355) (PF02836)ER
762903.Pedsa_0469(PF00703) (PF02929) (PF02837) (PF02836)ER
762903.Pedsa_3164(PF00703) (PF02837) (PF16355) (PF02836)ER
762903.Pedsa_0323(PF00703) (PF02929) (PF02837) (PF02836)ER
762903.Pedsa_0843(PF00703) (PF02837) (PF16355) (PF02836)ER; mitochondrial
762903.Pedsa_0799(PF00703) (PF02837) (PF16355) (PF02836)ER
762903.Pedsa_2187(PF00703) (PF02837) (PF16355) (PF02836)ER
762903.Pedsa_3071(PF11721) (PF00703) (PF02837) (PF02836)ER
762903.Pedsa_3713(PF00703) (PF02929) (PF02837) (PF02836)ER
762903.Pedsa_3738(PF00703) (PF02837) (PF16355) (PF02836)ER
762903.Pedsa_3402PF00295 (PF00703) (PF12708) (PF02836)ER
762903.Pedsa_2639(PF00703) (PF02837) (PF02836)ER
762903.Pedsa_0017(PF02838) (PF00728) (PF13287)ER
762903.Pedsa_3060(PF00703) (PF02837) (PF02836)(mitochondrial)
762903.Pedsa_1523(PF02838) (PF00728) (PF13287)ER
762903.Pedsa_3403(PF00703) (PF02837) (PF16355)ER
762903.Pedsa_0047(PF02838) (PF00728)ER
762903.Pedsa_1814(PF07940) (PF16889)ER
762903.Pedsa_1818(PF07940) (PF16889)ER
762903.Pedsa_1196(PF07940) (PF05426)ER
762903.Pedsa_0566(PF02838) (PF00728)ER
762903.Pedsa_1513(PF02838) (PF00728)ER
762903.Pedsa_2571(PF16338) (PF17137)ER
762903.Pedsa_3808(PF02278) (PF02884)ER
762903.Pedsa_3805(PF02278) (PF02884)ER
762903.Pedsa_2575(PF16338) (PF17137)ER
762903.Pedsa_3103(PF02838) (PF00728)ER
762903.Pedsa_3076(PF02055) (PF17189)ER; (ER)
762903.Pedsa_2708(PF03629) (PF02837)ER
762903.Pedsa_0298(PF02837) (PF14498)ER
762903.Pedsa_0297PF00295 (PF12708)ER
762903.Pedsa_1094(PF03629) (PF02837)ER
762903.Pedsa_2384(PF02838) (PF00728)ER
762903.Pedsa_3737(PF16338) (PF17137)ER
762903.Pedsa_3734(PF00703) (PF02837)ER; (ER)
762903.Pedsa_3726PF00295 (PF12708)ER
762903.Pedsa_3406(PF07940) (PF16332)ER
762903.Pedsa_3740(PF02837)ER
762903.Pedsa_3363(PF07940)ER
762903.Pedsa_3366(PF01095)ER
762903.Pedsa_3367PF00295ER
762903.Pedsa_2710(PF14498)ER
762903.Pedsa_0057(PF02278)ER
762903.Pedsa_3626PF00295ER
762903.Pedsa_0466(PF14498)ER
762903.Pedsa_0465(PF01095)ER
762903.Pedsa_0463(PF01095)ER
762903.Pedsa_3552(PF14307)ER
762903.Pedsa_1817PF07470ER
762903.Pedsa_0321(PF13088)ER
762903.Pedsa_0322(PF03629)ER
762903.Pedsa_0326(PF13088)ER
762903.Pedsa_1497(PF05426)ER
762903.Pedsa_0444(PF15892)ER
762903.Pedsa_0446(PF14498)ER
762903.Pedsa_0447(PF14498)ER
762903.Pedsa_0844(PF05426)ER
762903.Pedsa_0845PF07470ER
762903.Pedsa_2209(PF05426)(mitochondrial)
762903.Pedsa_2555(PF02055)ER
762903.Pedsa_0332(PF05448)ER
762903.Pedsa_3330(PF16401)(ER)
762903.Pedsa_1793(PF14885)ER
762903.Pedsa_0021(PF16401)(ER)
762903.Pedsa_0494PF07470ER
762903.Pedsa_2631PF06268ER
762903.Pedsa_0010(PF09992)ER
762903.Pedsa_0797(PF00703)ER
762903.Pedsa_0798PF00295ER
762903.Pedsa_2535PF00295ER
762903.Pedsa_0316PF00295ER
762903.Pedsa_1193PF14592ER
762903.Pedsa_1213PF15711ER
762903.Pedsa_2434(PF03629)ER
762903.Pedsa_1525(PF01436)ER
762903.Pedsa_0805PF00295ER
762903.Pedsa_0806(PF05448)ER
762903.Pedsa_0801PF00295ER
762903.Pedsa_0802PF00295ER
762903.Pedsa_3064(PF13088)ER
762903.Pedsa_1515(PF09992)ER
762903.Pedsa_1238(PF14938)ER
762903.Pedsa_3807PF14592ER
762903.Pedsa_2578(PF03629)ER
762903.Pedsa_3072PF07470ER
762903.Pedsa_2705(PF15979)ER
762903.Pedsa_0632PF14592ER
762903.Pedsa_1721PF05641ER
762903.Pedsa_2066PF07470ER
762903.Pedsa_3628PF14592ER
762903.Pedsa_3623(PF12708)ER
762903.Pedsa_3622PF14592ER
762903.Pedsa_3715PF00295ER
762903.Pedsa_3714PF00295ER
762903.Pedsa_0724(PF05448)ER
762903.Pedsa_0720PF14592ER
762903.Pedsa_0722PF14592ER
762903.Pedsa_0729PF14592ER
762903.Pedsa_1093(PF13088)ER
762903.Pedsa_1099(PF13088)(mitochondrial)
762903.Pedsa_2279(PF05448)ER
762903.Pedsa_2493PF07470ER
762903.Pedsa_2492(PF07940)mitochondrial
762903.Pedsa_2494(PF03629)ER
762903.Pedsa_2723PF00295ER
762903.Pedsa_2722PF07470ER
762903.Pedsa_1521(PF16387)ER
762903.Pedsa_1522(PF01436)ER
762903.Pedsa_3411PF07470ER
762903.Pedsa_1289PF13813ER
762903.Pedsa_2488(PF07940)mitochondrial
762903.Pedsa_3736(PF15979)ER
762903.Pedsa_3735PF07470ER
762903.Pedsa_3358(PF01095)ER
762903.Pedsa_0702(PF05448)ER
762903.Pedsa_3721PF07470ER
762903.Pedsa_3722PF00295ER
762903.Pedsa_3723PF07470ER
762903.Pedsa_3617(PF17137)ER
762903.Pedsa_0074(PF01436)(mitochondrial)
762903.Pedsa_0076(PF09992)ER
762903.Pedsa_0078(PF09992)ER
762903.Pedsa_0711PF07470ER
762903.Pedsa_3755PF07470mitochondrial
762903.Pedsa_3757PF00295ER
762903.Pedsa_3753(PF05426)ER
762903.Pedsa_3370PF07470ER
762903.Pedsa_3405PF07470ER
762903.Pedsa_3404(PF02929)ER
762903.Pedsa_0063PF07470ER
762903.Pedsa_0506(PF05426)ER
762903.Pedsa_0519(PF16338) (PF17137)
762903.Pedsa_2576(PF14498)(mitochondrial)
762903.Pedsa_1810(PF07940) (PF16332)
762903.Pedsa_3077(PF02055) (PF17189)
762903.Pedsa_3078(PF02055) (PF17189)
762903.Pedsa_3627(PF12708)(ER)
762903.Pedsa_1526(PF09992)(ER)
762903.Pedsa_2026(PF01436)(ER)
762903.Pedsa_0189(PF13376)
762903.Pedsa_1804PF16011
762903.Pedsa_3546(PF16317)
762903.Pedsa_0194(PF13376)
762903.Pedsa_1770(PF12899)
762903.Pedsa_0542(PF06983)
762903.Pedsa_2094(PF06983)
762903.Pedsa_2417(PF05185)
762903.Pedsa_1995PF16830
762903.Pedsa_1366(PF08022)
762903.Pedsa_1368(PF00454)
762903.Pedsa_2322(PF14307)
762903.Pedsa_3630PF00295
762903.Pedsa_0800PF00295
762903.Pedsa_1512(PF16387)
762903.Pedsa_0342(PF06983)
762903.Pedsa_0631PF14592
762903.Pedsa_1406(PF13376)
762903.Pedsa_3636(PF04405)
762903.Pedsa_3632(PF04405)
762903.Pedsa_0736PF16011
762903.Pedsa_2398(PF06983)
762903.Pedsa_2396(PF06983)
762903.Pedsa_0719(PF15892)
762903.Pedsa_0712(PF03629)
762903.Pedsa_1109(PF13376)
762903.Pedsa_2029(PF13376)
762903.Pedsa_1441(PF08022)
762903.Pedsa_0508(PF06983)

Detailed merged results for each protein sequence

Individual results for each protein sequence

Genome based results

Summary

  • Gram negative: YES (FDR = 0.5 %)
  • Functional Type III secretion system: NO (FDR = 12.5 %)
  • Functional Type IV secretion system: NO (FDR = 7.2 %)
  • Functional Type VI secretion system: NO (FDR = 7.7 %)

Individual results for each secretion system

Parameters:

==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================