Effective results for Runella slithyformis DSM 19594 (eggnog40)
Summary
Number of putative secreted proteins: 408
- Predicted by T4SEpre: 0
- Predicted by EffectiveELD: 86 eukaryotic-like domains, contained in 408 proteins (30 high, 378 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): None
Protein based results
Putative secreted proteins (weak evidence indicated by parentheses)
| Protein | EffectiveT3 | EffectiveCCBD | T4SEpre | EffectiveELD | Predotar |
|---|---|---|---|---|---|
| 761193.Runsl_2930 | (PF16334) (PF16335) (PF17168) (PF08760) | ER | |||
| 761193.Runsl_5614 | (PF07676) (PF00326) (PF00930) | ER | |||
| 761193.Runsl_1070 | (PF07676) (PF14684) (PF03572) | ER | |||
| 761193.Runsl_3128 | (PF07676) (PF14684) (PF03572) | ER | |||
| 761193.Runsl_0370 | (PF07676) (PF14684) (PF03572) | ER | |||
| 761193.Runsl_2417 | (PF07676) (PF00326) (PF00930) | ER | |||
| 761193.Runsl_4257 | (PF07676) (PF00326) | (mitochondrial) | |||
| 761193.Runsl_4225 | (PF00326) (PF00930) | ER | |||
| 761193.Runsl_2784 | (PF00326) (PF00930) | ER | |||
| 761193.Runsl_0923 | (PF07676) (PF00326) | ER | |||
| 761193.Runsl_4909 | PF12904 PF13204 | ER | |||
| 761193.Runsl_0908 | (PF07676) (PF00326) | ER | |||
| 761193.Runsl_1076 | (PF04389) (PF04253) | ER | |||
| 761193.Runsl_3637 | PF12904 PF13204 | ER | |||
| 761193.Runsl_3635 | (PF07676) (PF16472) | ER | |||
| 761193.Runsl_3638 | PF12904 PF13204 | ER | |||
| 761193.Runsl_0539 | (PF06283) (PF07995) | ER | |||
| 761193.Runsl_4712 | (PF00326) (PF00930) | ER | |||
| 761193.Runsl_0831 | (PF07676) (PF00326) | ER | |||
| 761193.Runsl_5037 | (PF00326) (PF00930) | (mitochondrial) | |||
| 761193.Runsl_0734 | (PF13087) (PF13086) | mitochondrial; (mitochondrial) | |||
| 761193.Runsl_4304 | (PF06283) (PF07995) | ER | |||
| 761193.Runsl_0424 | (PF07940) (PF16332) | (ER) | |||
| 761193.Runsl_0557 | (PF07676) | mitochondrial | |||
| 761193.Runsl_3041 | (PF00326) | ER | |||
| 761193.Runsl_1910 | (PF07676) | ER | |||
| 761193.Runsl_4753 | (PF07168) | ER | |||
| 761193.Runsl_1327 | (PF07676) | (ER) | |||
| 761193.Runsl_2487 | (PF15902) | ER | |||
| 761193.Runsl_4204 | (PF06439) | ER | |||
| 761193.Runsl_3784 | (PF01408) | (mitochondrial) | |||
| 761193.Runsl_0881 | (PF01261) | mitochondrial; (mitochondrial) | |||
| 761193.Runsl_0882 | (PF12831) | mitochondrial; (mitochondrial) | |||
| 761193.Runsl_5462 | (PF15902) | ER | |||
| 761193.Runsl_4641 | (PF12704) | (mitochondrial) | |||
| 761193.Runsl_0169 | (PF01804) | ER | |||
| 761193.Runsl_0129 | (PF01804) | ER | |||
| 761193.Runsl_4937 | (PF01408) | (mitochondrial) | |||
| 761193.Runsl_4938 | (PF01261) | ER | |||
| 761193.Runsl_0433 | (PF07940) | ER | |||
| 761193.Runsl_0434 | (PF15892) | ER | |||
| 761193.Runsl_0234 | (PF01408) | (mitochondrial) | |||
| 761193.Runsl_3037 | (PF04389) | ER | |||
| 761193.Runsl_3363 | (PF12704) | mitochondrial | |||
| 761193.Runsl_1967 | (PF12704) | mitochondrial | |||
| 761193.Runsl_1966 | (PF12704) | mitochondrial | |||
| 761193.Runsl_1963 | (PF01261) | ER | |||
| 761193.Runsl_1968 | (PF12704) | mitochondrial | |||
| 761193.Runsl_3446 | (PF01261) | ER | |||
| 761193.Runsl_3533 | (PF01804) | ER | |||
| 761193.Runsl_0894 | PF16117 | ER | |||
| 761193.Runsl_0672 | (PF07676) | ER | |||
| 761193.Runsl_1550 | (PF13088) | ER | |||
| 761193.Runsl_1553 | (PF02230) | ER | |||
| 761193.Runsl_0157 | (PF13088) | (ER) | |||
| 761193.Runsl_0152 | (PF03321) | (mitochondrial) | |||
| 761193.Runsl_0203 | (PF07940) | (mitochondrial) | |||
| 761193.Runsl_3023 | (PF01408) | mitochondrial | |||
| 761193.Runsl_1970 | (PF12704) | (mitochondrial) | |||
| 761193.Runsl_3159 | (PF13354) | (mitochondrial) | |||
| 761193.Runsl_2172 | (PF13173) | mitochondrial; (mitochondrial) | |||
| 761193.Runsl_4226 | (PF15892) | ER | |||
| 761193.Runsl_2014 | (PF06439) | ER | |||
| 761193.Runsl_1462 | (PF04389) | ER | |||
| 761193.Runsl_5465 | PF00014 | ER | |||
| 761193.Runsl_2948 | (PF03572) | ER | |||
| 761193.Runsl_5083 | (PF07676) | ER | |||
| 761193.Runsl_4688 | (PF01408) | (mitochondrial) | |||
| 761193.Runsl_3309 | (PF06439) | ER | |||
| 761193.Runsl_4354 | (PF00326) | ER | |||
| 761193.Runsl_4353 | (PF03572) | ER | |||
| 761193.Runsl_3095 | (PF12704) | mitochondrial | |||
| 761193.Runsl_2786 | (PF12006) | ER | |||
| 761193.Runsl_2780 | (PF06439) | ER | |||
| 761193.Runsl_1949 | (PF12704) | mitochondrial | |||
| 761193.Runsl_1948 | (PF12704) | mitochondrial | |||
| 761193.Runsl_1940 | (PF12704) | mitochondrial | |||
| 761193.Runsl_1947 | (PF12704) | (mitochondrial); mitochondrial | |||
| 761193.Runsl_1946 | (PF12704) | mitochondrial | |||
| 761193.Runsl_1899 | (PF01408) | mitochondrial | |||
| 761193.Runsl_1897 | (PF04734) | ER | |||
| 761193.Runsl_1890 | (PF01408) | ER | |||
| 761193.Runsl_1139 | (PF12704) | mitochondrial | |||
| 761193.Runsl_0857 | (PF01261) | ER | |||
| 761193.Runsl_0859 | (PF01408) | mitochondrial; (mitochondrial) | |||
| 761193.Runsl_2991 | (PF07676) | ER | |||
| 761193.Runsl_5636 | (PF00246) | ER | |||
| 761193.Runsl_4234 | (PF15902) | ER | |||
| 761193.Runsl_1539 | (PF12006) | ER | |||
| 761193.Runsl_3221 | (PF16472) | ER | |||
| 761193.Runsl_3222 | (PF00094) | ER | |||
| 761193.Runsl_5201 | (PF07676) | ER | |||
| 761193.Runsl_0138 | (PF07876) | mitochondrial; (mitochondrial) | |||
| 761193.Runsl_3310 | (PF01408) | (mitochondrial) | |||
| 761193.Runsl_3311 | (PF01261) | ER | |||
| 761193.Runsl_4908 | (PF07676) | ER | |||
| 761193.Runsl_4905 | (PF08309) | ER | |||
| 761193.Runsl_4906 | (PF08309) | ER | |||
| 761193.Runsl_1950 | (PF12704) | mitochondrial | |||
| 761193.Runsl_1951 | (PF12704) | mitochondrial | |||
| 761193.Runsl_1952 | (PF12704) | mitochondrial | |||
| 761193.Runsl_0463 | (PF17132) | ER | |||
| 761193.Runsl_0464 | (PF01261) | ER | |||
| 761193.Runsl_2194 | (PF17132) | ER | |||
| 761193.Runsl_5400 | (PF01408) | (mitochondrial) | |||
| 761193.Runsl_0914 | (PF00246) | ER | |||
| 761193.Runsl_3582 | (PF11954) | ER | |||
| 761193.Runsl_2218 | (PF06439) | ER | |||
| 761193.Runsl_4595 | (PF01261) | ER; (ER) | |||
| 761193.Runsl_1322 | (PF01261) | (ER) | |||
| 761193.Runsl_1324 | (PF06283) | ER | |||
| 761193.Runsl_0121 | (PF13088) | ER | |||
| 761193.Runsl_1180 | (PF01804) | ER | |||
| 761193.Runsl_1059 | (PF12704) | mitochondrial; (mitochondrial) | |||
| 761193.Runsl_4375 | (PF01261) | mitochondrial | |||
| 761193.Runsl_2565 | (PF13905) | ER | |||
| 761193.Runsl_0277 | (PF00326) | ER | |||
| 761193.Runsl_3102 | (PF15071) | ER | |||
| 761193.Runsl_2748 | (PF16656) | ER | |||
| 761193.Runsl_3613 | (PF00326) | ER | |||
| 761193.Runsl_2744 | (PF10142) | ER | |||
| 761193.Runsl_2353 | (PF12704) | ER; (ER) | |||
| 761193.Runsl_2227 | (PF06439) | mitochondrial | |||
| 761193.Runsl_0872 | (PF06283) | ER; mitochondrial | |||
| 761193.Runsl_4588 | (PF07876) | ER | |||
| 761193.Runsl_5184 | (PF06439) | ER | |||
| 761193.Runsl_5344 | (PF11954) | ER | |||
| 761193.Runsl_5610 | (PF15902) | ER | |||
| 761193.Runsl_5619 | (PF07995) | ER; (ER) | |||
| 761193.Runsl_2513 | (PF07876) | ER | |||
| 761193.Runsl_0648 | (PF06283) | ER | |||
| 761193.Runsl_0243 | (PF00326) | ER | |||
| 761193.Runsl_0248 | (PF01261) | (ER) | |||
| 761193.Runsl_2421 | (PF06439) | ER | |||
| 761193.Runsl_4818 | (PF07995) | (ER) | |||
| 761193.Runsl_3119 | (PF04734) | ER | |||
| 761193.Runsl_2349 | (PF01261) | mitochondrial; (mitochondrial) | |||
| 761193.Runsl_5356 | (PF13354) | ER | |||
| 761193.Runsl_4771 | (PF01229) | ER | |||
| 761193.Runsl_4770 | (PF01229) | ER | |||
| 761193.Runsl_4487 | (PF07995) | ER | |||
| 761193.Runsl_1291 | (PF07593) | ER | |||
| 761193.Runsl_1290 | (PF07593) | ER | |||
| 761193.Runsl_0079 | (PF13905) | ER | |||
| 761193.Runsl_0650 | (PF06439) | ER | |||
| 761193.Runsl_0068 | PF16401 | (ER) | |||
| 761193.Runsl_3634 | (PF01261) | (ER) | |||
| 761193.Runsl_3632 | (PF07593) | ER | |||
| 761193.Runsl_3639 | (PF01408) | (mitochondrial) | |||
| 761193.Runsl_5560 | (PF01715) | ER | |||
| 761193.Runsl_4761 | (PF06439) | ER | |||
| 761193.Runsl_4768 | (PF01229) | ER | |||
| 761193.Runsl_4769 | (PF07470) | ER | |||
| 761193.Runsl_5521 | (PF06439) | ER | |||
| 761193.Runsl_5362 | (PF01408) | (mitochondrial) | |||
| 761193.Runsl_2880 | (PF13304) | (mitochondrial); (plastid) | |||
| 761193.Runsl_1447 | (PF07676) | ER | |||
| 761193.Runsl_1448 | (PF03321) | mitochondrial | |||
| 761193.Runsl_0394 | PF10577 | ER | |||
| 761193.Runsl_0006 | (PF13354) | ER | |||
| 761193.Runsl_1716 | (PF04734) | ER | |||
| 761193.Runsl_2534 | (PF05572) | ER | |||
| 761193.Runsl_0719 | (PF03572) | ER | |||
| 761193.Runsl_4838 | (PF06439) | ER | |||
| 761193.Runsl_3132 | (PF00246) | ER | |||
| 761193.Runsl_3133 | (PF00246) | ER | |||
| 761193.Runsl_0538 | (PF07940) | ER | |||
| 761193.Runsl_2713 | (PF04389) | ER | |||
| 761193.Runsl_2714 | (PF07995) | ER; (ER) | |||
| 761193.Runsl_3622 | (PF07593) | ER | |||
| 761193.Runsl_3431 | (PF04389) | ER | |||
| 761193.Runsl_3432 | (PF16871) | ER | |||
| 761193.Runsl_2250 | (PF16011) | ER | |||
| 761193.Runsl_0829 | (PF01261) | (ER) | |||
| 761193.Runsl_2092 | (PF16656) | ER | |||
| 761193.Runsl_5393 | (PF05572) | mitochondrial | |||
| 761193.Runsl_2876 | (PF07995) | ER | |||
| 761193.Runsl_1381 | (PF06283) | ER | |||
| 761193.Runsl_0387 | PF16117 | ER | |||
| 761193.Runsl_4024 | (PF07676) | ER | |||
| 761193.Runsl_0016 | (PF00326) | ER | |||
| 761193.Runsl_0012 | (PF07995) | ER | |||
| 761193.Runsl_0018 | (PF02230) | ER | |||
| 761193.Runsl_0708 | (PF00246) | ER | |||
| 761193.Runsl_2707 | (PF03572) | ER | |||
| 761193.Runsl_3429 | (PF06439) | ER | |||
| 761193.Runsl_2845 | (PF03572) | ER | |||
| 761193.Runsl_2281 | (PF07470) | ER | |||
| 761193.Runsl_1481 | (PF00326) | ER | |||
| 761193.Runsl_1008 | (PF01261) | mitochondrial | |||
| 761193.Runsl_1733 | (PF01408) | ER | |||
| 761193.Runsl_1131 | (PF07995) | ER | |||
| 761193.Runsl_4456 | (PF13354) | ER | |||
| 761193.Runsl_1643 | (PF07676) | ER | |||
| 761193.Runsl_1138 | (PF12704) | mitochondrial | |||
| 761193.Runsl_0733 | (PF08309) | ER | |||
| 761193.Runsl_0284 | (PF01804) | ER | |||
| 761193.Runsl_2271 | (PF16757) | ER | |||
| 761193.Runsl_2273 | (PF16757) | ER | |||
| 761193.Runsl_4733 | (PF06283) | ER | |||
| 761193.Runsl_4736 | (PF01408) | (mitochondrial); (ER) | |||
| 761193.Runsl_4195 | (PF04389) | ER | |||
| 761193.Runsl_4194 | (PF00697) | (mitochondrial) | |||
| 761193.Runsl_0038 | (PF13088) | ER | |||
| 761193.Runsl_3251 | (PF03572) | ER | |||
| 761193.Runsl_3250 | (PF15902) | ER | |||
| 761193.Runsl_3254 | (PF13354) | ER | |||
| 761193.Runsl_4467 | (PF06884) | ER | |||
| 761193.Runsl_4461 | (PF13173) | ER | |||
| 761193.Runsl_4468 | (PF07995) | ER | |||
| 761193.Runsl_4868 | (PF13653) | ER | |||
| 761193.Runsl_3077 | (PF01408) | ER | |||
| 761193.Runsl_4720 | (PF06439) | ER | |||
| 761193.Runsl_1399 | (PF01229) | ER | |||
| 761193.Runsl_5120 | (PF00386) | ER | |||
| 761193.Runsl_5230 | (PF04389) | ER | |||
| 761193.Runsl_2914 | (PF04389) | ER | |||
| 761193.Runsl_4508 | (PF06439) | ER | |||
| 761193.Runsl_3084 | (PF00246) | ER | |||
| 761193.Runsl_1752 | (PF07676) | ER | |||
| 761193.Runsl_5603 | (PF06439) | ER | |||
| 761193.Runsl_2448 | (PF07593) | ER | |||
| 761193.Runsl_2443 | (PF07995) | ER | |||
| 761193.Runsl_2444 | (PF01261) | ER | |||
| 761193.Runsl_1806 | (PF12831) | ER | |||
| 761193.Runsl_1804 | (PF13905) | ER | |||
| 761193.Runsl_0405 | (PF00112) | ER | |||
| 761193.Runsl_3063 | (PF13354) | ER | |||
| 761193.Runsl_3067 | (PF11954) | ER | |||
| 761193.Runsl_3068 | (PF15902) | ER | |||
| 761193.Runsl_1938 | (PF07648) | ER | |||
| 761193.Runsl_1937 | (PF12704) | mitochondrial | |||
| 761193.Runsl_2137 | (PF07470) | ER | |||
| 761193.Runsl_2136 | (PF13173) | mitochondrial | |||
| 761193.Runsl_2134 | (PF07470) | ER | |||
| 761193.Runsl_3875 | (PF07995) | ER | |||
| 761193.Runsl_2836 | (PF16656) | ER | |||
| 761193.Runsl_2901 | (PF01261) | (mitochondrial) | |||
| 761193.Runsl_5046 | (PF01804) | ER | |||
| 761193.Runsl_0187 | (PF07995) | (ER); (mitochondrial) | |||
| 761193.Runsl_0088 | (PF13088) | ER | |||
| 761193.Runsl_0369 | (PF00246) | ER | |||
| 761193.Runsl_0364 | (PF00246) | ER | |||
| 761193.Runsl_0367 | (PF13173) | (mitochondrial) | |||
| 761193.Runsl_3693 | (PF03572) | ER | |||
| 761193.Runsl_0412 | (PF06439) | ER | |||
| 761193.Runsl_0417 | (PF07470) | ER | |||
| 761193.Runsl_2635 | (PF12831) | ER | |||
| 761193.Runsl_2630 | (PF17132) | ER | |||
| 761193.Runsl_2020 | (PF12006) | (ER) | |||
| 761193.Runsl_5459 | (PF12704) | (mitochondrial) | |||
| 761193.Runsl_5456 | (PF13905) | ER | |||
| 761193.Runsl_4954 | (PF07593) | ER | |||
| 761193.Runsl_2879 | (PF01408) | mitochondrial; (mitochondrial) | |||
| 761193.Runsl_1596 | (PF05572) | ER | |||
| 761193.Runsl_4070 | (PF13354) | ER | |||
| 761193.Runsl_1176 | (PF16661) | (mitochondrial) | |||
| 761193.Runsl_0797 | (PF01261) | ER | |||
| 761193.Runsl_4301 | (PF07676) | ER | |||
| 761193.Runsl_3362 | PF12904 PF13204 | ||||
| 761193.Runsl_1961 | (PF12704) | (mitochondrial) | |||
| 761193.Runsl_0159 | PF13384 PF13592 | ||||
| 761193.Runsl_1465 | PF13384 PF13592 | ||||
| 761193.Runsl_0931 | PF13384 PF13592 | ||||
| 761193.Runsl_4750 | (PF07786) | (ER) | |||
| 761193.Runsl_2997 | PF13384 PF13592 | ||||
| 761193.Runsl_1407 | (PF01408) | (mitochondrial) | |||
| 761193.Runsl_4344 | PF13384 PF13592 | ||||
| 761193.Runsl_5330 | (PF01408) | (mitochondrial) | |||
| 761193.Runsl_1321 | (PF13087) (PF13086) | ||||
| 761193.Runsl_4977 | PF13384 PF13592 | ||||
| 761193.Runsl_4965 | (PF01408) | (ER) | |||
| 761193.Runsl_0640 | PF13384 PF13592 | ||||
| 761193.Runsl_4773 | (PF07470) | (ER) | |||
| 761193.Runsl_3341 | (PF13087) (PF13086) | ||||
| 761193.Runsl_2506 | (PF01261) | (mitochondrial) | |||
| 761193.Runsl_5019 | PF13384 PF13592 | ||||
| 761193.Runsl_3727 | (PF06414) | (mitochondrial) | |||
| 761193.Runsl_1271 | (PF01408) | (mitochondrial) | |||
| 761193.Runsl_1124 | (PF01408) | (ER) | |||
| 761193.Runsl_5142 | PF13384 PF13592 | ||||
| 761193.Runsl_4735 | (PF01261) | (ER) | |||
| 761193.Runsl_5028 | (PF00697) | (mitochondrial) | |||
| 761193.Runsl_4991 | (PF01261) | (mitochondrial) | |||
| 761193.Runsl_1920 | PF13384 PF13592 | ||||
| 761193.Runsl_3085 | (PF01408) | (ER) | |||
| 761193.Runsl_4980 | (PF13173) | (ER) | |||
| 761193.Runsl_3503 | PF13384 PF13592 | ||||
| 761193.Runsl_4067 | (PF01261) | (mitochondrial) | |||
| 761193.Runsl_5073 | PF13384 PF13592 | ||||
| 761193.Runsl_0423 | (PF06439) | ||||
| 761193.Runsl_0554 | (PF06414) | ||||
| 761193.Runsl_4752 | (PF13173) | ||||
| 761193.Runsl_5442 | (PF05153) | ||||
| 761193.Runsl_3323 | (PF12831) | ||||
| 761193.Runsl_3324 | (PF12831) | ||||
| 761193.Runsl_3039 | (PF05168) | ||||
| 761193.Runsl_2001 | (PF04389) | ||||
| 761193.Runsl_5472 | (PF13304) | ||||
| 761193.Runsl_4658 | (PF01408) | ||||
| 761193.Runsl_4788 | (PF01715) | ||||
| 761193.Runsl_2557 | (PF01408) | ||||
| 761193.Runsl_2798 | (PF07786) | ||||
| 761193.Runsl_0200 | (PF07676) | ||||
| 761193.Runsl_0935 | (PF03412) | ||||
| 761193.Runsl_5645 | (PF13304) | ||||
| 761193.Runsl_1630 | (PF12704) | ||||
| 761193.Runsl_2788 | (PF03412) | ||||
| 761193.Runsl_1943 | (PF12704) | ||||
| 761193.Runsl_1894 | (PF01408) | ||||
| 761193.Runsl_3797 | (PF07786) | ||||
| 761193.Runsl_3956 | (PF01408) | ||||
| 761193.Runsl_0926 | (PF03412) | ||||
| 761193.Runsl_0854 | (PF05491) | ||||
| 761193.Runsl_2201 | (PF00326) | ||||
| 761193.Runsl_4236 | (PF01408) | ||||
| 761193.Runsl_0263 | (PF13366) | ||||
| 761193.Runsl_0465 | (PF07876) | ||||
| 761193.Runsl_2752 | PF16401 | ||||
| 761193.Runsl_1887 | (PF13366) | ||||
| 761193.Runsl_3764 | PF13592 | ||||
| 761193.Runsl_2219 | (PF01408) | ||||
| 761193.Runsl_0862 | (PF07470) | ||||
| 761193.Runsl_1323 | (PF01408) | ||||
| 761193.Runsl_1325 | (PF07786) | ||||
| 761193.Runsl_0128 | (PF10013) | not used | |||
| 761193.Runsl_1508 | (PF13906) | ||||
| 761193.Runsl_1985 | (PF03412) | ||||
| 761193.Runsl_1981 | PF03096 | ||||
| 761193.Runsl_0900 | (PF05168) | ||||
| 761193.Runsl_4586 | (PF07221) | ||||
| 761193.Runsl_1335 | (PF02230) | ||||
| 761193.Runsl_4213 | (PF03412) | ||||
| 761193.Runsl_4960 | PF00609 | ||||
| 761193.Runsl_0647 | (PF01261) | ||||
| 761193.Runsl_0643 | (PF01261) | ||||
| 761193.Runsl_0642 | (PF01408) | ||||
| 761193.Runsl_2518 | (PF00697) | ||||
| 761193.Runsl_0649 | (PF01261) | ||||
| 761193.Runsl_0240 | (PF13304) | ||||
| 761193.Runsl_3827 | (PF13173) | ||||
| 761193.Runsl_2642 | (PF12831) | ||||
| 761193.Runsl_2233 | (PF04389) | ||||
| 761193.Runsl_1341 | (PF05491) | ||||
| 761193.Runsl_0809 | (PF01408) | ||||
| 761193.Runsl_5288 | (PF13173) | ||||
| 761193.Runsl_4777 | (PF07940) | ||||
| 761193.Runsl_0103 | (PF13366) | ||||
| 761193.Runsl_4554 | (PF16661) | ||||
| 761193.Runsl_4391 | (PF03412) | ||||
| 761193.Runsl_2501 | (PF01408) | ||||
| 761193.Runsl_3295 | (PF13304) | ||||
| 761193.Runsl_2722 | (PF01408) | ||||
| 761193.Runsl_0397 | (PF07221) | ||||
| 761193.Runsl_4017 | (PF02230) | ||||
| 761193.Runsl_0625 | (PF12704) | ||||
| 761193.Runsl_2535 | (PF05168) | ||||
| 761193.Runsl_2385 | (PF01408) | ||||
| 761193.Runsl_1477 | (PF00326) | ||||
| 761193.Runsl_0636 | (PF13173) | ||||
| 761193.Runsl_0635 | (PF05168) | ||||
| 761193.Runsl_0522 | (PF13173) | ||||
| 761193.Runsl_1878 | (PF13366) | ||||
| 761193.Runsl_3658 | (PF13304) | ||||
| 761193.Runsl_1743 | PF03514 | ||||
| 761193.Runsl_2467 | (PF03412) | ||||
| 761193.Runsl_1865 | (PF01408) | ||||
| 761193.Runsl_1386 | (PF04389) | ||||
| 761193.Runsl_3647 | (PF07221) | ||||
| 761193.Runsl_2609 | (PF01408) | ||||
| 761193.Runsl_2070 | (PF03572) | ||||
| 761193.Runsl_4739 | (PF12831) | ||||
| 761193.Runsl_4737 | (PF01408) | ||||
| 761193.Runsl_5488 | (PF01408) | ||||
| 761193.Runsl_5486 | (PF01261) | ||||
| 761193.Runsl_4512 | (PF07221) | ||||
| 761193.Runsl_0031 | PF06888 | ||||
| 761193.Runsl_0509 | (PF13366) | ||||
| 761193.Runsl_0612 | (PF03321) | ||||
| 761193.Runsl_2916 | (PF13304) | ||||
| 761193.Runsl_2044 | (PF12704) | ||||
| 761193.Runsl_2822 | PF03514 | ||||
| 761193.Runsl_4186 | (PF13304) | ||||
| 761193.Runsl_4504 | (PF01408) | ||||
| 761193.Runsl_4506 | (PF13304) | ||||
| 761193.Runsl_1750 | PF16401 | ||||
| 761193.Runsl_4874 | (PF10504) | ||||
| 761193.Runsl_2449 | (PF03412) | ||||
| 761193.Runsl_4989 | (PF00112) | ||||
| 761193.Runsl_0999 | (PF01261) | ||||
| 761193.Runsl_3870 | (PF01408) | ||||
| 761193.Runsl_2834 | (PF01408) | ||||
| 761193.Runsl_4069 | (PF13173) | ||||
| 761193.Runsl_4066 | (PF01408) | ||||
| 761193.Runsl_3278 | (PF01408) | ||||
| 761193.Runsl_0743 | (PF13366) | ||||
| 761193.Runsl_3052 | (PF03412) | ||||
| 761193.Runsl_1901 | (PF01408) | ||||
| 761193.Runsl_2125 | (PF05693) | ||||
| 761193.Runsl_2127 | PF16401 | ||||
| 761193.Runsl_3999 | (PF01261) | ||||
| 761193.Runsl_2507 | (PF01261) | ||||
| 761193.Runsl_5457 | (PF05168) | ||||
| 761193.Runsl_4276 | (PF13087) | ||||
| 761193.Runsl_0080 | (PF13905) | ||||
| 761193.Runsl_4419 | (PF00862) | ||||
| 761193.Runsl_4303 | (PF01261) | ||||
| 761193.Runsl_1771 | (PF14686) |
Detailed merged results for each protein sequence
- Detailed merged results as table (merge_results.html)
- Detailed merged results as tab delimited file (merge_results.csv)
Individual results for each protein sequence
- EffectiveELD predictions (PROTEINS.ELD.TXT)
- Predotar predictions using animal/human model (Predotar_output_modelANIMAL.TXT)
- Predotar predictions using plant model (Predotar_output_modelPLANT.TXT)
Genome based results
Summary
- Gram negative: YES (FDR = 0.5 %)
- Functional Type III secretion system: NO (FDR = 12.5 %)
- Functional Type IV secretion system: NO (FDR = 7.2 %)
- Functional Type VI secretion system: NO (FDR = 7.7 %)
Individual results for each secretion system
- List of 100 most important COGs/NOGs for prediction of functional Type III secretion system (T3_top100_COGS.xls)
- List of 100 most important COGs/NOGs for prediction of functional Type IV secretion system (T4_top100_COGS.xls)
- List of 100 most important COGs/NOGs for prediction of functional Type VI secretion system (T6_top100_COGS.xls)
- List of COGs assigned to Type III secretion system in KEGG (T3SS_KEGG_cmp.xls)
- List of COGs assigned to Type IV secretion system in KEGG (T4SS_KEGG_cmp.xls)
- List of COGs assigned to Type VI secretion system in KEGG (T6SS_KEGG_cmp.xls)
Parameters:
==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================
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