Metamenu

Effective results for Lachnospiraceae bacterium 2_1_46FAA (eggnog40)

Summary

Number of putative secreted proteins: 59
- Predicted by T4SEpre: 0
- Predicted by EffectiveELD: 21 eukaryotic-like domains, contained in 59 proteins (0 high, 59 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): None

Protein based results

Putative secreted proteins (weak evidence indicated by parentheses)

ProteinEffectiveT3EffectiveCCBDT4SEpreEffectiveELDPredotar
742723.HMPREF9477_01366(PF16353) (PF02929) (PF08305)ER
742723.HMPREF9477_01467(PF16353) (PF02929) (PF08305)ER
742723.HMPREF9477_00171(PF07555) (PF00754)ER
742723.HMPREF9477_02055(PF16353) (PF02929)ER
742723.HMPREF9477_01285(PF08305) (PF12733)ER
742723.HMPREF9477_00959(PF07555) (PF00754)ER
742723.HMPREF9477_00458(PF16353) (PF02929)ER
742723.HMPREF9477_01463(PF00754) (PF13287)ER
742723.HMPREF9477_01787(PF08305) (PF12733)ER
742723.HMPREF9477_02029(PF08305) (PF00754)ER
742723.HMPREF9477_00745(PF06541)ER; (ER)
742723.HMPREF9477_00627(PF06541)ER
742723.HMPREF9477_00194(PF12733)mitochondrial
742723.HMPREF9477_00195(PF12733)ER
742723.HMPREF9477_02061(PF00754)ER
742723.HMPREF9477_00378(PF00754)ER
742723.HMPREF9477_01621(PF00754)ER
742723.HMPREF9477_01384(PF00754)ER; (ER)
742723.HMPREF9477_01382(PF00754)ER
742723.HMPREF9477_00977(PF06541)ER
742723.HMPREF9477_01195(PF00754)ER
742723.HMPREF9477_00455(PF12821)ER; (ER)
742723.HMPREF9477_00452(PF12821)ER
742723.HMPREF9477_01672(PF11070)ER
742723.HMPREF9477_01461(PF00754)ER
742723.HMPREF9477_00209(PF00754)ER
742723.HMPREF9477_01310(PF00754)ER
742723.HMPREF9477_01756(PF00754)ER
742723.HMPREF9477_01910(PF00754)ER
742723.HMPREF9477_00779(PF16353) (PF02929)
742723.HMPREF9477_01049(PF16189) (PF16188)
742723.HMPREF9477_00733(PF16189) (PF16188)
742723.HMPREF9477_01307(PF16189) (PF16188)
742723.HMPREF9477_02077(PF13518)
742723.HMPREF9477_02078(PF13518)
742723.HMPREF9477_00989(PF13518)
742723.HMPREF9477_00563(PF13287)
742723.HMPREF9477_02060(PF16011)
742723.HMPREF9477_00142(PF13518)
742723.HMPREF9477_01821(PF13597)not used
742723.HMPREF9477_01820(PF13597)
742723.HMPREF9477_00945(PF07247)
742723.HMPREF9477_00834(PF01795)
742723.HMPREF9477_01835(PF01416)
742723.HMPREF9477_01660(PF12646)
742723.HMPREF9477_00100(PF01795)
742723.HMPREF9477_01275(PF13240)
742723.HMPREF9477_01276(PF13240)
742723.HMPREF9477_01272(PF13240)
742723.HMPREF9477_01273(PF13240)
742723.HMPREF9477_00115(PF13127)
742723.HMPREF9477_00935(PF13240)
742723.HMPREF9477_00474(PF01416)
742723.HMPREF9477_00312(PF13597)
742723.HMPREF9477_01797(PF12821)
742723.HMPREF9477_01206(PF13518)
742723.HMPREF9477_01681(PF13518)
742723.HMPREF9477_01218(PF01416)
742723.HMPREF9477_01924(PF13240)

Detailed merged results for each protein sequence

Individual results for each protein sequence

Genome based results

Summary

  • Gram negative: NO (FDR = 0.5 %)
  • Functional Type III secretion system: N.D.
  • Functional Type IV secretion system: NO (FDR = 7.2 %)
  • Functional Type VI secretion system: N.D.

Individual results for each secretion system

Parameters:

==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================