Metamenu

Effective results for Zunongwangia profunda SM-A87 (eggnog40)

Summary

Number of putative secreted proteins: 160
- Predicted by T4SEpre: 0
- Predicted by EffectiveELD: 41 eukaryotic-like domains, contained in 160 proteins (4 high, 156 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): None

Protein based results

Putative secreted proteins (weak evidence indicated by parentheses)

ProteinEffectiveT3EffectiveCCBDT4SEpreEffectiveELDPredotar
655815.ZPR_4335(PF16334) (PF16335) (PF17168) (PF08760)ER
655815.ZPR_2238(PF00675) (PF05193)ER
655815.ZPR_4095(PF00675) (PF05193)ER
655815.ZPR_1008(PF16353) (PF02929)ER
655815.ZPR_3552(PF00675) (PF05193)ER
655815.ZPR_0367(PF13276) (PF00665)mitochondrial
655815.ZPR_0360(PF02055) (PF17189)ER
655815.ZPR_0387(PF00675) (PF05193)ER
655815.ZPR_3548(PF13276) (PF00665)mitochondrial; (mitochondrial)
655815.ZPR_2932(PF00675) (PF05193)ER
655815.ZPR_4392(PF02055) (PF17189)ER
655815.ZPR_4394(PF02055) (PF17189)ER
655815.ZPR_4485(PF00675) (PF05193)ER
655815.ZPR_4486(PF00675) (PF05193)ER
655815.ZPR_1521(PF13276) (PF00665)mitochondrial; (mitochondrial)
655815.ZPR_1282(PF00675) (PF05193)ER
655815.ZPR_0911(PF16353) (PF02929)ER
655815.ZPR_0041(PF03321)mitochondrial
655815.ZPR_1400PF08695ER
655815.ZPR_2627(PF14587)ER
655815.ZPR_2337(PF16313)ER
655815.ZPR_4177(PF07971)ER
655815.ZPR_4179(PF07971)ER
655815.ZPR_1248(PF03572)ER
655815.ZPR_0445(PF04041)ER
655815.ZPR_3653(PF09949)mitochondrial
655815.ZPR_4202PF05007ER
655815.ZPR_1337(PF13905)ER
655815.ZPR_1336(PF13905)ER
655815.ZPR_0656(PF03572)(mitochondrial)
655815.ZPR_2644(PF01030)ER
655815.ZPR_2063(PF03572)ER
655815.ZPR_3226(PF00665)mitochondrial; (mitochondrial)
655815.ZPR_4184(PF07971)ER
655815.ZPR_1379(PF00930)ER
655815.ZPR_4333(PF13287)ER
655815.ZPR_0345(PF00930)ER
655815.ZPR_3734(PF03572)ER
655815.ZPR_2731(PF07971)ER
655815.ZPR_4178(PF13287)ER
655815.ZPR_0420(PF03572)ER
655815.ZPR_4663(PF16313)ER
655815.ZPR_2156(PF07971)ER
655815.ZPR_2157(PF04450)ER
655815.ZPR_1387(PF00930)ER
655815.ZPR_0011(PF03572)ER
655815.ZPR_3374(PF00403)ER
655815.ZPR_3701(PF16313)ER
655815.ZPR_4269(PF00436)ER
655815.ZPR_3564(PF03572)ER
655815.ZPR_1523(PF13905)ER
655815.ZPR_3355(PF13276)(mitochondrial)
655815.ZPR_4037(PF00403)(ER)
655815.ZPR_1981(PF07971)ER
655815.ZPR_3291(PF03572)ER
655815.ZPR_1615(PF14938)ER
655815.ZPR_4021(PF00403)ER
655815.ZPR_4585(PF13905)ER
655815.ZPR_4589(PF00930)ER; (ER)
655815.ZPR_2509(PF16387)ER
655815.ZPR_3318(PF13276) (PF00665)
655815.ZPR_3264(PF00675) (PF05193)
655815.ZPR_3490(PF13276) (PF00665)
655815.ZPR_0799(PF03321)(plastid)
655815.ZPR_3472(PF02055) (PF17189)
655815.ZPR_2247(PF13276) (PF00665)
655815.ZPR_2486(PF13276) (PF00665)
655815.ZPR_0529(PF00675) (PF05193)
655815.ZPR_3445(PF00675) (PF05193)
655815.ZPR_3991(PF13276) (PF00665)
655815.ZPR_3988(PF06414)(mitochondrial)
655815.ZPR_2703(PF00665)(ER)
655815.ZPR_3547(PF01527)(mitochondrial)
655815.ZPR_1388(PF16353) (PF02929)
655815.ZPR_1541(PF16353) (PF02929)
655815.ZPR_4649(PF14587) (PF17189)
655815.ZPR_2377(PF00675) (PF05193)
655815.ZPR_2373(PF13276) (PF00665)
655815.ZPR_1522(PF01527)(mitochondrial)
655815.ZPR_1450(PF13276) (PF00665)
655815.ZPR_3358(PF01679)ER; not used
655815.ZPR_1508(PF13276) (PF00665)
655815.ZPR_1311(PF00665)
655815.ZPR_0307(PF03572)
655815.ZPR_3037(PF03648)
655815.ZPR_3321(PF01527)
655815.ZPR_3322(PF13276)
655815.ZPR_3280(PF01527)not used
655815.ZPR_0678(PF16313)
655815.ZPR_0675(PF00403)
655815.ZPR_2687(PF00436)
655815.ZPR_1249(PF07971)
655815.ZPR_0440(PF01527)
655815.ZPR_1424(PF06414)
655815.ZPR_3491(PF01527)
655815.ZPR_2386(PF00665)
655815.ZPR_4417(PF00436)
655815.ZPR_4356(PF13905)
655815.ZPR_2071PF08695
655815.ZPR_0647(PF00930)
655815.ZPR_3475(PF04041)
655815.ZPR_1356(PF01293)
655815.ZPR_2248(PF01527)
655815.ZPR_2485(PF01527)
655815.ZPR_3992(PF01527)
655815.ZPR_3225(PF01527)
655815.ZPR_2299(PF00403)
655815.ZPR_1759(PF00436)
655815.ZPR_4182(PF04041)
655815.ZPR_3040(PF03648)
655815.ZPR_1108(PF00665)
655815.ZPR_4429(PF01527)
655815.ZPR_2611(PF01679)not used
655815.ZPR_1966(PF13653)
655815.ZPR_3420(PF01527)
655815.ZPR_4045(PF00403)
655815.ZPR_4040(PF00403)
655815.ZPR_0357(PF04041)
655815.ZPR_0990(PF00436)
655815.ZPR_2732(PF07971)
655815.ZPR_2451(PF09949)
655815.ZPR_1823(PF14022)
655815.ZPR_4702(PF00665)
655815.ZPR_4701(PF01527)
655815.ZPR_0362(PF01293)
655815.ZPR_1011(PF05153)
655815.ZPR_4711(PF00665)
655815.ZPR_2159(PF07971)
655815.ZPR_4270(PF00436)
655815.ZPR_4384(PF07971)
655815.ZPR_3393(PF00403)
655815.ZPR_2385(PF01527)
655815.ZPR_3371(PF00403)
655815.ZPR_3370(PF00403)
655815.ZPR_4015(PF00436)
655815.ZPR_2896(PF16871)
655815.ZPR_4428(PF00665)
655815.ZPR_3369(PF00403)
655815.ZPR_2374(PF01527)
655815.ZPR_0987(PF00665)
655815.ZPR_1632(PF03321)
655815.ZPR_4134(PF00436)
655815.ZPR_1451(PF01527)
655815.ZPR_3319(PF01527)
655815.ZPR_3282(PF13276)
655815.ZPR_0487(PF01293)
655815.ZPR_3354(PF01527)not used
655815.ZPR_4131PF06390
655815.ZPR_1518(PF00665)
655815.ZPR_3761(PF10013)not used
655815.ZPR_1516(PF14022)
655815.ZPR_3168(PF04450)
655815.ZPR_1725(PF03572)
655815.ZPR_1509(PF01527)
655815.ZPR_4022(PF00403)
655815.ZPR_4025(PF00403)
655815.ZPR_4233(PF00403)
655815.ZPR_4234(PF00403)
655815.ZPR_4580(PF00436)
655815.ZPR_3338(PF00665)

Detailed merged results for each protein sequence

Individual results for each protein sequence

Genome based results

Summary

  • Gram negative: YES (FDR = 0.5 %)
  • Functional Type III secretion system: NO (FDR = 12.5 %)
  • Functional Type IV secretion system: NO (FDR = 7.2 %)
  • Functional Type VI secretion system: NO (FDR = 7.7 %)

Individual results for each secretion system

Parameters:

==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================