Metamenu

Effective results for Ruminococcus flavefaciens FD-1 (eggnog40)

Summary

Number of putative secreted proteins: 262
- Predicted by T4SEpre: 0
- Predicted by EffectiveELD: 42 eukaryotic-like domains, contained in 262 proteins (151 high, 111 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): None

Protein based results

Putative secreted proteins (weak evidence indicated by parentheses)

ProteinEffectiveT3EffectiveCCBDT4SEpreEffectiveELDPredotar
641112.RflaF_010100019128PF00457 (PF00331) PF02018ER; (ER)
641112.RflaF_010100019133(PF00932) PF13287 (PF08757)ER
641112.RflaF_010100004642(PF00932) PF13287 (PF08757)ER
641112.RflaF_010100003245(PF00932) PF13287 (PF08757)ER
641112.RflaF_010100002318(PF00932) PF13287 (PF08757)ER
641112.RflaF_010100000105(PF00932) PF13287 (PF08757)ER
641112.RflaF_010100001094(PF00150) (PF16990)ER
641112.RflaF_010100006261PF13306 (PF01841)ER
641112.RflaF_010100006266PF13306 (PF01841)ER
641112.RflaF_010100006251PF13306 (PF01841)ER
641112.RflaF_010100000964(PF02156) (PF16990)mitochondrial
641112.RflaF_010100006246PF13306 (PF01841)ER
641112.RflaF_010100006481PF00457 PF02018ER; (ER)
641112.RflaF_010100013300PF13306 (PF01841)ER
641112.RflaF_010100001559PF00759 PF02018ER
641112.RflaF_010100006029PF00457 (PF00331) PF02018(plastid)
641112.RflaF_010100005579PF00759 PF02018ER
641112.RflaF_010100019703(PF00331) PF02018ER
641112.RflaF_010100014622(PF02156) (PF16990)(mitochondrial)
641112.RflaF_010100012364(PF02156)ER
641112.RflaF_010100020706(PF13787)ER
641112.RflaF_010100006536PF00759ER; (ER)
641112.RflaF_010100006842(PF00150)(ER)
641112.RflaF_010100021021(PF01183)ER
641112.RflaF_010100018291PF02018ER; (ER)
641112.RflaF_010100016850(PF06541)ER
641112.RflaF_010100002173(PF16990)ER; (ER)
641112.RflaF_010100012004PF13306ER
641112.RflaF_010100004732(PF06541)ER
641112.RflaF_010100014162PF13306ER
641112.RflaF_010100006511PF00457mitochondrial; (mitochondrial)
641112.RflaF_010100006601PF13306ER
641112.RflaF_010100020154PF13306ER
641112.RflaF_010100015684PF13306ER
641112.RflaF_010100008937(PF00137)(ER)
641112.RflaF_010100006702(PF00137)(ER)
641112.RflaF_010100006256(PF01841)ER
641112.RflaF_010100000380PF00759ER; (ER)
641112.RflaF_010100021186(PF12158)ER
641112.RflaF_010100017569(PF08123)(mitochondrial)
641112.RflaF_010100016947PF00457ER
641112.RflaF_010100003827PF00457(mitochondrial)
641112.RflaF_010100017554PF13306ER
641112.RflaF_010100008942(PF00137)(ER)
641112.RflaF_010100020139PF13306ER
641112.RflaF_010100010124PF13306ER
641112.RflaF_010100011539PF13306ER
641112.RflaF_010100018786PF13306(ER)
641112.RflaF_010100021276(PF00150)ER
641112.RflaF_010100020029PF13306ER
641112.RflaF_010100014127PF13306ER
641112.RflaF_010100001639PF02018ER
641112.RflaF_010100014052(PF00150)(mitochondrial)
641112.RflaF_010100006009PF13306ER
641112.RflaF_010100002278PF00759ER
641112.RflaF_010100019793(PF13787)ER
641112.RflaF_010100000375PF13306ER
641112.RflaF_010100015886PF00239(mitochondrial); (plastid)
641112.RflaF_010100014592PF00759ER
641112.RflaF_010100008355(PF01841)ER
641112.RflaF_010100004327(PF02156)ER
641112.RflaF_010100005329PF13306ER
641112.RflaF_010100005324PF13306ER
641112.RflaF_010100020069(PF01841)ER; (ER)
641112.RflaF_010100012209(PF01183)ER
641112.RflaF_010100019523(PF00150)ER
641112.RflaF_010100019528(PF00150)ER
641112.RflaF_010100006697(PF00137)(ER)
641112.RflaF_010100016186(PF06541)ER
641112.RflaF_010100006581PF13306ER
641112.RflaF_010100006747(PF00079)ER
641112.RflaF_010100006742(PF00079)ER
641112.RflaF_010100015856PF13306ER
641112.RflaF_010100012851(PF01841)ER
641112.RflaF_010100016912(PF02156) (PF16990)(ER)
641112.RflaF_010100002303PF00457 (PF00331) PF02018
641112.RflaF_010100019533PF13306ER
641112.RflaF_010100011634(PF00544)mitochondrial
641112.RflaF_010100021221PF13306ER
641112.RflaF_010100005499PF02018ER
641112.RflaF_010100005549(PF06541)(ER)
641112.RflaF_010100018966(PF00331) PF02018(ER)
641112.RflaF_010100003405PF00457ER
641112.RflaF_010100002313(PF08757)ER
641112.RflaF_010100016256PF13306ER
641112.RflaF_010100010718PF13306ER; (ER)
641112.RflaF_010100000030(PF01183)ER
641112.RflaF_010100008235PF13306ER; (ER)
641112.RflaF_010100005574PF00759ER
641112.RflaF_010100003410(PF00544)(ER)
641112.RflaF_010100003235(PF00544)ER
641112.RflaF_010100003230PF13306(mitochondrial)
641112.RflaF_010100009652PF13306ER
641112.RflaF_010100019518(PF00150)ER
641112.RflaF_010100007557(PF00137)ER
641112.RflaF_010100011544PF13306ER
641112.RflaF_010100009122(PF00150)ER
641112.RflaF_010100004767PF02018ER
641112.RflaF_010100014647PF00759ER
641112.RflaF_010100006541PF13306ER
641112.RflaF_010100007122PF13306ER
641112.RflaF_010100001879(PF00150)ER
641112.RflaF_010100003435PF13306ER
641112.RflaF_010100008240PF13306ER
641112.RflaF_010100001994(PF01841)ER
641112.RflaF_010100001999(PF01841)ER
641112.RflaF_010100020421PF02018mitochondrial
641112.RflaF_010100011719PF02018mitochondrial
641112.RflaF_010100011714(PF08757)ER
641112.RflaF_010100020386(PF01841)ER
641112.RflaF_010100009192PF13306ER
641112.RflaF_010100019934PF13306ER
641112.RflaF_010100014832PF13306ER
641112.RflaF_010100006531(PF00331) PF02018
641112.RflaF_010100006471(PF00544)(ER)
641112.RflaF_010100008160(PF09820) (PF08011)
641112.RflaF_010100008565(PF00150)plastid
641112.RflaF_010100011659PF03432(mitochondrial)
641112.RflaF_010100015424(PF09820) (PF08011)
641112.RflaF_010100010593(PF09820) (PF08011)
641112.RflaF_010100020304(PF09820) (PF08011)
641112.RflaF_010100005139PF00759(mitochondrial)
641112.RflaF_010100006116PF00239(mitochondrial)
641112.RflaF_010100001249(PF01183)(ER)
641112.RflaF_010100020329(PF09820) (PF08011)
641112.RflaF_010100017544PF00759(ER)
641112.RflaF_010100019718(PF09820) (PF08011)
641112.RflaF_010100003777PF02018(ER)
641112.RflaF_010100009992PF05183(mitochondrial)
641112.RflaF_010100017479(PF09820) (PF08011)
641112.RflaF_010100018199(PF04851) (PF03457)
641112.RflaF_010100016595PF00239
641112.RflaF_010100007267PF03432
641112.RflaF_010100016116PF03432
641112.RflaF_010100012639PF13306
641112.RflaF_010100021151(PF12158)
641112.RflaF_010100021156(PF12158)
641112.RflaF_010100017884(PF04970)
641112.RflaF_010100020951PF03432
641112.RflaF_010100015644(PF04851)
641112.RflaF_010100003622PF00239
641112.RflaF_010100004929PF13306
641112.RflaF_010100011844PF00239
641112.RflaF_010100008450PF03432not used
641112.RflaF_010100005734(PF04851)
641112.RflaF_010100015966(PF01841)
641112.RflaF_010100014507PF13306
641112.RflaF_010100005394PF00239
641112.RflaF_010100007242PF00239
641112.RflaF_010100014372PF12224
641112.RflaF_010100011479PF00239
641112.RflaF_010100007646(PF03457)
641112.RflaF_010100017994PF12224
641112.RflaF_010100015379(PF01661)
641112.RflaF_010100012931(PF12437)
641112.RflaF_010100007332(PF02156)
641112.RflaF_010100014152(PF09234)
641112.RflaF_010100002154(PF04970)
641112.RflaF_010100002550PF00239
641112.RflaF_010100020736(PF04851)
641112.RflaF_010100012244(PF04851)
641112.RflaF_010100018891(PF06541)
641112.RflaF_010100011914PF12224
641112.RflaF_010100009977PF03432
641112.RflaF_010100020836(PF04851)
641112.RflaF_010100020831PF00239
641112.RflaF_010100009547PF13306
641112.RflaF_010100018416PF00239
641112.RflaF_010100001949(PF01171)
641112.RflaF_010100021181(PF09234)
641112.RflaF_010100008465(PF01661)
641112.RflaF_010100009577PF00239
641112.RflaF_010100008365(PF09820)
641112.RflaF_010100003612PF03432
641112.RflaF_010100004979(PF01183)
641112.RflaF_010100020586PF03432
641112.RflaF_010100020059PF07453
641112.RflaF_010100006937PF02018
641112.RflaF_010100015312(PF01171)
641112.RflaF_010100017959PF00239
641112.RflaF_010100009777PF00239
641112.RflaF_010100004892PF13306
641112.RflaF_010100003667PF03432
641112.RflaF_010100011664PF00239
641112.RflaF_010100017499PF12224
641112.RflaF_010100011794PF13306
641112.RflaF_010100012686(PF01661)
641112.RflaF_010100012069(PF01171)
641112.RflaF_010100011884PF00239
641112.RflaF_010100004017(PF01171)
641112.RflaF_010100019091PF13306
641112.RflaF_010100005909PF13306
641112.RflaF_010100000165(PF01661)
641112.RflaF_010100004467(PF13151)
641112.RflaF_010100016962(PF13151)
641112.RflaF_010100009832PF00239
641112.RflaF_010100011434PF15636
641112.RflaF_010100005974(PF12158)
641112.RflaF_010100007776(PF01661)
641112.RflaF_010100000205(PF01841)
641112.RflaF_010100007617(PF10571)
641112.RflaF_010100015529PF03432
641112.RflaF_010100010002(PF04851)
641112.RflaF_010100004202PF03432
641112.RflaF_010100004537(PF03457)
641112.RflaF_010100001659PF00239
641112.RflaF_010100020786PF00239
641112.RflaF_010100018611PF00239
641112.RflaF_010100018616(PF14311)
641112.RflaF_010100006206(PF09234)
641112.RflaF_010100011369PF03432
641112.RflaF_010100018211(PF12158)not used
641112.RflaF_010100015629(PF04851)
641112.RflaF_010100008205(PF04851)
641112.RflaF_010100005494(PF09180)not used
641112.RflaF_010100009322PF00759
641112.RflaF_010100020796PF03432
641112.RflaF_010100003400PF02018
641112.RflaF_010100011579(PF09180)
641112.RflaF_010100015871PF00239
641112.RflaF_010100005159PF13306not used
641112.RflaF_010100016735PF13306
641112.RflaF_010100016885PF13306
641112.RflaF_010100016640PF03432
641112.RflaF_010100012524PF00239
641112.RflaF_010100016081PF00239
641112.RflaF_010100006797PF11443
641112.RflaF_010100007552(PF01991)
641112.RflaF_010100004954PF00239
641112.RflaF_010100011140(PF01841)
641112.RflaF_010100011389(PF04851)
641112.RflaF_010100010708PF00239
641112.RflaF_010100010144PF00239
641112.RflaF_010100014242(PF04851)
641112.RflaF_010100012951(PF01183)
641112.RflaF_010100016096PF00239
641112.RflaF_010100012776PF00239
641112.RflaF_010100004964PF00239
641112.RflaF_010100005174PF00759
641112.RflaF_010100004572PF03432
641112.RflaF_010100002505(PF00150)
641112.RflaF_010100005224(PF14622)
641112.RflaF_010100002343PF13306
641112.RflaF_010100011949PF00239
641112.RflaF_010100007207PF00239
641112.RflaF_010100021176(PF09234)
641112.RflaF_010100021171(PF09234)
641112.RflaF_010100008245PF13306
641112.RflaF_010100020971PF00239
641112.RflaF_010100015489PF03432
641112.RflaF_010100014827PF00239
641112.RflaF_010100004587PF00239
641112.RflaF_010100016705(PF04851)
641112.RflaF_010100010845PF12224
641112.RflaF_010100017894(PF14622)
641112.RflaF_010100020946PF00239
641112.RflaF_010100017879PF00239
641112.RflaF_010100017874PF13306
641112.RflaF_010100016011(PF12437)
641112.RflaF_010100000924PF03432
641112.RflaF_010100015901(PF04851)
641112.RflaF_010100014527(PF01183)

Detailed merged results for each protein sequence

Individual results for each protein sequence

Genome based results

Summary

  • Gram negative: NO (FDR = 0.5 %)
  • Functional Type III secretion system: N.D.
  • Functional Type IV secretion system: NO (FDR = 7.2 %)
  • Functional Type VI secretion system: N.D.

Individual results for each secretion system

Parameters:

==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================