Effective results for Denitrovibrio acetiphilus DSM 12809 (eggnog40)

Summary

Number of putative secreted proteins: 110
- Predicted by T4SEpre: 0
- Predicted by EffectiveELD: 12 eukaryotic-like domains, contained in 110 proteins (1 high, 109 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): None

Protein based results

Putative secreted proteins (weak evidence indicated by parentheses)

ProteinEffectiveT3EffectiveCCBDT4SEpreEffectiveELDPredotar
522772.Dacet_2175(PF00384) (PF01568)mitochondrial
522772.Dacet_2616(PF00384) (PF01568)(mitochondrial); mitochondrial
522772.Dacet_1649(PF00384) (PF01568)(mitochondrial)
522772.Dacet_1655(PF00384) (PF01568)mitochondrial; (mitochondrial)
522772.Dacet_2644(PF13276) (PF00665)mitochondrial
522772.Dacet_1793(PF00384) (PF01568)mitochondrial; (mitochondrial)
522772.Dacet_1678(PF00384) (PF01568)mitochondrial
522772.Dacet_2103(PF00384) (PF01568)(mitochondrial)
522772.Dacet_0086(PF00384) (PF01568)mitochondrial; (mitochondrial)
522772.Dacet_2786(PF13276) (PF00665)mitochondrial
522772.Dacet_0197(PF00384) (PF01568)(mitochondrial)
522772.Dacet_0193(PF00384) (PF01568)(mitochondrial)
522772.Dacet_0205(PF00384) (PF01568)(mitochondrial)
522772.Dacet_0201(PF00384) (PF01568)(mitochondrial)
522772.Dacet_0668(PF13276) (PF00665)mitochondrial
522772.Dacet_0768(PF00665)ER; (ER)
522772.Dacet_0016(PF00384) (PF01568) (PF13237)
522772.Dacet_1085(PF00665)ER; (ER)
522772.Dacet_2121(PF00384) (PF01568)(mitochondrial)
522772.Dacet_0713(PF00665)ER; (ER)
522772.Dacet_0246(PF00665)ER; (ER)
522772.Dacet_1617PF01591(mitochondrial)
522772.Dacet_0689(PF13276) (PF00665) (PF01527)
522772.Dacet_2575(PF00384) (PF01568)
522772.Dacet_2173(PF00384) (PF01568)
522772.Dacet_1128(PF13276) (PF00665)
522772.Dacet_1373(PF13276) (PF01527)
522772.Dacet_0760(PF00665)(mitochondrial)
522772.Dacet_0926(PF00384) (PF01568)
522772.Dacet_2070(PF00384) (PF01568)
522772.Dacet_2675(PF13276) (PF00665)
522772.Dacet_2674(PF13276) (PF00665)
522772.Dacet_2673(PF01527)(mitochondrial)
522772.Dacet_2493(PF00384) (PF13237)
522772.Dacet_1479(PF01527)(mitochondrial)
522772.Dacet_1078(PF00665)(mitochondrial)
522772.Dacet_2640(PF00665)(mitochondrial)
522772.Dacet_0270(PF00665)(mitochondrial)
522772.Dacet_0654(PF13276) (PF00665)
522772.Dacet_2699(PF13276) (PF00665)
522772.Dacet_0642(PF00665)(mitochondrial)
522772.Dacet_0648(PF13276) (PF01527)
522772.Dacet_1597(PF03266)(ER)
522772.Dacet_0677(PF00384) (PF01568)
522772.Dacet_2568(PF13276) (PF01527)
522772.Dacet_2764(PF00384) (PF01568)
522772.Dacet_0993(PF13276) (PF01527)
522772.Dacet_1485(PF13276) (PF00665)
522772.Dacet_1484(PF01527)(mitochondrial)
522772.Dacet_1480(PF13276) (PF00665)
522772.Dacet_0548(PF00872)
522772.Dacet_1129(PF01527)
522772.Dacet_1494(PF00872)
522772.Dacet_0714(PF01695)
522772.Dacet_0715(PF01695)
522772.Dacet_0767(PF01695)
522772.Dacet_0766(PF00872)
522772.Dacet_2639(PF01695)
522772.Dacet_1999(PF13237)
522772.Dacet_0759(PF01695)
522772.Dacet_0754(PF00872)
522772.Dacet_0724(PF00872)
522772.Dacet_2676(PF01527)
522772.Dacet_1642(PF01695)
522772.Dacet_1081(PF01695)
522772.Dacet_1080(PF00665)
522772.Dacet_1087(PF01527)
522772.Dacet_1086(PF01695)
522772.Dacet_2800(PF00872)
522772.Dacet_0635(PF00872)
522772.Dacet_0252(PF00665)
522772.Dacet_0709(PF00665)
522772.Dacet_1470(PF01695)
522772.Dacet_1471(PF00665)
522772.Dacet_1077(PF01695)
522772.Dacet_0710(PF01695)
522772.Dacet_0247(PF01695)
522772.Dacet_0624(PF01527)
522772.Dacet_1867(PF01527)not used
522772.Dacet_1866(PF00872)
522772.Dacet_1915(PF13237)
522772.Dacet_2645(PF01527)
522772.Dacet_2820(PF00665)
522772.Dacet_2821(PF01695)
522772.Dacet_2822(PF00872)
522772.Dacet_1792(PF00872)
522772.Dacet_0271(PF01695)
522772.Dacet_0655(PF00872)
522772.Dacet_0653(PF01527)
522772.Dacet_1459(PF01527)
522772.Dacet_2033(PF12038)
522772.Dacet_2583(PF00665)
522772.Dacet_2582(PF01695)
522772.Dacet_2698(PF01527)
522772.Dacet_0266(PF00665)
522772.Dacet_0267(PF01695)
522772.Dacet_0643(PF01695)
522772.Dacet_1594(PF00872)
522772.Dacet_0673(PF00665)
522772.Dacet_0674(PF01695)
522772.Dacet_1618(PF00872)
522772.Dacet_2785(PF01527)
522772.Dacet_2944(PF00862)
522772.Dacet_0669(PF01527)
522772.Dacet_0667(PF00872)
522772.Dacet_0663(PF00872)
522772.Dacet_0687(PF13237)
522772.Dacet_0688(PF00872)
522772.Dacet_1482(PF01527)
522772.Dacet_1486(PF00872)

Detailed merged results for each protein sequence

Individual results for each protein sequence

Genome based results

Summary

  • Gram negative: YES (FDR = 0.5 %)
  • Functional Type III secretion system: NO (FDR = 12.5 %)
  • Functional Type IV secretion system: NO (FDR = 7.2 %)
  • Functional Type VI secretion system: NO (FDR = 7.7 %)

Individual results for each secretion system

Parameters:

==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================