Effective results for Ruminococcus sp. 5_1_39BFAA (eggnog40)

Summary

Number of putative secreted proteins: 106
- Predicted by T4SEpre: 0
- Predicted by EffectiveELD: 24 eukaryotic-like domains, contained in 106 proteins (5 high, 101 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): None

Protein based results

Putative secreted proteins (weak evidence indicated by parentheses)

Protein	EffectiveT3	EffectiveCCBD	T4SEpre	EffectiveELD	Predotar
457412.RSAG_01622				(PF00137)	ER
457412.RSAG_02116				(PF00768)	ER
457412.RSAG_00506				(PF00381)	(mitochondrial)
457412.RSAG_02760				(PF00239)	(mitochondrial)
457412.RSAG_01800				(PF00239)	mitochondrial; (mitochondrial)
457412.RSAG_02225				(PF00768)	ER
457412.RSAG_02689				(PF00137)	(ER)
457412.RSAG_03160				(PF00768)	mitochondrial
457412.RSAG_03096				(PF00239)	(ER)
457412.RSAG_02788				(PF01554)	ER
457412.RSAG_03301				(PF04607)	(ER)
457412.RSAG_00032				(PF09820) (PF08011)	(plastid)
457412.RSAG_02639				(PF01554)	ER
457412.RSAG_02841				(PF00381)	(mitochondrial)
457412.RSAG_02080				(PF03644)	(ER)
457412.RSAG_00977				(PF09820) (PF08011)	(plastid)
457412.RSAG_01651				(PF00768)	ER
457412.RSAG_00282				(PF00239)	mitochondrial
457412.RSAG_02287				(PF01554)	mitochondrial
457412.RSAG_02283				(PF01554)	mitochondrial
457412.RSAG_03004				(PF01554)	ER
457412.RSAG_00992				(PF01554)	(ER)
457412.RSAG_00398				(PF01554)	(ER)
457412.RSAG_01068				(PF00768)	ER
457412.RSAG_01287				(PF01554)	(ER)
457412.RSAG_02489				(PF01554)	(ER)
457412.RSAG_00247				(PF01554)	(mitochondrial)
457412.RSAG_01449				(PF01554)	ER
457412.RSAG_02823				(PF09820) (PF08011)
457412.RSAG_01020				(PF04422) (PF04432)
457412.RSAG_03152				(PF09820) (PF08011)
457412.RSAG_01246				(PF09820) (PF08011)
457412.RSAG_01549				(PF12646)	(mitochondrial)
457412.RSAG_01014				(PF04422) (PF04432)
457412.RSAG_00572				(PF00768)	(plastid)
457412.RSAG_00599				PF07247	(mitochondrial)
457412.RSAG_03078				(PF09820) (PF08011)
457412.RSAG_00910				(PF01554)	(ER)
457412.RSAG_02716				(PF09820) (PF08011)
457412.RSAG_01383				(PF00137)	(ER)
457412.RSAG_01061				(PF00768)	(ER)
457412.RSAG_00259				(PF13151)	(mitochondrial)
457412.RSAG_00677				(PF09820) (PF08011)
457412.RSAG_01599				(PF14311)
457412.RSAG_01917				(PF01554)
457412.RSAG_01624				(PF01991)
457412.RSAG_02243				(PF00381)
457412.RSAG_00276				(PF00239)
457412.RSAG_01452				(PF01554)
457412.RSAG_02589				(PF09820)
457412.RSAG_02588				(PF08011)
457412.RSAG_02568				(PF10369)
457412.RSAG_00518				(PF04607)
457412.RSAG_02912				(PF12437)
457412.RSAG_02571				(PF10369)
457412.RSAG_02778				(PF04607)
457412.RSAG_00216				PF13886
457412.RSAG_00850				(PF01554)
457412.RSAG_02966				(PF01554)
457412.RSAG_03094				(PF00239)
457412.RSAG_03095				(PF00239)
457412.RSAG_01006				PF07959
457412.RSAG_00150				(PF00239)
457412.RSAG_00157				(PF01795)
457412.RSAG_01783				(PF00112)
457412.RSAG_00948				(PF01554)
457412.RSAG_02941				(PF00381)
457412.RSAG_00160				(PF01554)
457412.RSAG_01306				(PF10369)
457412.RSAG_00010				(PF04607)
457412.RSAG_02302				(PF05495)
457412.RSAG_01209				(PF01554)
457412.RSAG_02536				(PF01554)
457412.RSAG_01189				(PF00239)
457412.RSAG_02322				(PF00239)
457412.RSAG_02321				(PF00239)
457412.RSAG_02320				(PF00239)
457412.RSAG_02054				(PF01554)
457412.RSAG_00801				(PF00239)
457412.RSAG_00803				(PF00239)
457412.RSAG_01359				(PF12437)
457412.RSAG_01357				(PF00381)
457412.RSAG_00603				(PF04607)
457412.RSAG_02609				(PF01554)
457412.RSAG_02605				(PF01554)
457412.RSAG_00291				(PF00239)
457412.RSAG_00131				(PF00768)
457412.RSAG_01393				(PF00381)
457412.RSAG_01088				(PF01554)
457412.RSAG_03008				PF12873
457412.RSAG_00722				(PF01554)
457412.RSAG_01257				(PF00239)
457412.RSAG_01700				(PF01554)
457412.RSAG_02385				(PF01795)
457412.RSAG_02497				(PF01554)
457412.RSAG_02124				(PF00768)
457412.RSAG_02482				(PF13151)
457412.RSAG_02133				(PF00381)
457412.RSAG_02733				PF07247
457412.RSAG_00253				(PF04607)
457412.RSAG_00673				(PF01554)
457412.RSAG_00670				(PF04607)
457412.RSAG_03034				(PF00112)
457412.RSAG_03501				(PF00239)
457412.RSAG_00880				(PF00239)
457412.RSAG_00405				(PF00381)

Detailed merged results for each protein sequence

• Detailed merged results as table (merge_results.html)
• Detailed merged results as tab delimited file (merge_results.csv)

Individual results for each protein sequence

• EffectiveELD predictions (PROTEINS.ELD.TXT)
• Predotar predictions using animal/human model (Predotar_output_modelANIMAL.TXT)
• Predotar predictions using plant model (Predotar_output_modelPLANT.TXT)

Genome based results

Summary

• Gram negative: NO (FDR = 0.5 %)
• Functional Type III secretion system: N.D.
• Functional Type IV secretion system: NO (FDR = 7.2 %)
• Functional Type VI secretion system: N.D.

Individual results for each secretion system

Parameters:

==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================