Metamenu

Effective results for Saccharopolyspora erythraea NRRL 2338 (eggnog40)

Summary

Number of putative secreted proteins: 317
- Predicted by T4SEpre: 0
- Predicted by EffectiveELD: 55 eukaryotic-like domains, contained in 317 proteins (6 high, 311 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): None

Protein based results

Putative secreted proteins (weak evidence indicated by parentheses)

ProteinEffectiveT3EffectiveCCBDT4SEpreEffectiveELDPredotar
405948.SeryN2_010100016878(PF00698) (PF02801) (PF14765) (PF16197) (PF08659)(mitochondrial)
405948.SeryN2_010100031649(PF00698) (PF02801) (PF14765) (PF16197)(ER); ER
405948.SeryN2_010100018546(PF00698) (PF02801) (PF14765) (PF16197) (PF08659)
405948.SeryN2_010100010722(PF00698) (PF02801) (PF14765) (PF16197) (PF08659)
405948.SeryN2_010100031654(PF00698) (PF02801) (PF16197) (PF08659)(plastid)
405948.SeryN2_010100032303(PF00698) (PF02801) (PF14765) (PF16197) (PF08659)
405948.SeryN2_010100035675(PF00698) (PF02801) (PF14765) (PF16197) (PF08659)
405948.SeryN2_010100033015(PF00698) (PF02801) (PF14765) (PF16197) (PF08659)
405948.SeryN2_010100025686(PF00698) (PF02801) (PF14765) (PF16197) (PF08659)
405948.SeryN2_010100025681(PF00698) (PF02801) (PF14765) (PF16197) (PF08659)
405948.SeryN2_010100034325(PF00698) (PF02801) (PF16197) (PF08659)
405948.SeryN2_010100014389(PF00698) (PF02801) (PF16197)(ER)
405948.SeryN2_010100036735(PF00698) (PF02801) (PF14765) (PF08659)
405948.SeryN2_010100034465(PF00698) (PF02801) (PF16197) (PF08659)
405948.SeryN2_010100036800(PF00698) (PF02801) (PF16197) (PF08659)not used
405948.SeryN2_010100025991PF14021(mitochondrial); (plastid)
405948.SeryN2_010100015705(PF07555)ER
405948.SeryN2_010100014399(PF00698) (PF02801) (PF16197)
405948.SeryN2_010100031689(PF00083)ER
405948.SeryN2_010100036355(PF00083)ER; (ER)
405948.SeryN2_010100036605(PF08530)ER
405948.SeryN2_010100012857(PF07555)ER
405948.SeryN2_010100005752(PF00201)ER
405948.SeryN2_010100029318(PF00089)(mitochondrial)
405948.SeryN2_010100035700(PF00083)(ER)
405948.SeryN2_010100033025(PF04892)ER
405948.SeryN2_010100021977(PF00891)ER
405948.SeryN2_010100001082(PF04138)mitochondrial; (mitochondrial)
405948.SeryN2_010100035265(PF00698) (PF02801) (PF16197)
405948.SeryN2_010100034650(PF08530)ER
405948.SeryN2_010100029743PF14021ER
405948.SeryN2_010100011602(PF04138)ER
405948.SeryN2_010100025906(PF13649)mitochondrial
405948.SeryN2_010100035420(PF00089)ER
405948.SeryN2_010100034450(PF00083)mitochondrial; (mitochondrial)
405948.SeryN2_010100013832(PF04892)ER
405948.SeryN2_010100031385(PF09348)(mitochondrial)
405948.SeryN2_010100036715(PF00698) (PF02801) (PF16197)
405948.SeryN2_010100020278(PF00089)ER
405948.SeryN2_010100023954(PF13653)ER; (ER)
405948.SeryN2_010100016863(PF00891)(ER)
405948.SeryN2_010100002662(PF03070)(mitochondrial); plastid
405948.SeryN2_010100031634(PF00201)(ER); ER
405948.SeryN2_010100018421(PF00089)ER
405948.SeryN2_010100028738(PF04892)ER
405948.SeryN2_010100015033(PF02163)(ER)
405948.SeryN2_010100025706(PF00089)ER
405948.SeryN2_010100027626(PF08326)mitochondrial; (mitochondrial)
405948.SeryN2_010100029348(PF00698) (PF02801) (PF16197)
405948.SeryN2_010100001322(PF00201)(ER)
405948.SeryN2_010100036325(PF08530)ER
405948.SeryN2_010100033055(PF04892)ER
405948.SeryN2_010100007182(PF04892)(ER); ER
405948.SeryN2_010100005722(PF00891)(ER)
405948.SeryN2_010100021522(PF00582)(mitochondrial)
405948.SeryN2_010100019853(PF00582)(ER)
405948.SeryN2_010100009890(PF00083)ER
405948.SeryN2_010100016933(PF00083)ER
405948.SeryN2_010100023609(PF04892)(ER)
405948.SeryN2_010100030563(PF04892)mitochondrial
405948.SeryN2_010100013592(PF00089)ER
405948.SeryN2_010100018811(PF00201)mitochondrial
405948.SeryN2_010100019191(PF00012)(mitochondrial); plastid
405948.SeryN2_010100015640(PF00089)ER
405948.SeryN2_010100000420(PF05719)(ER)
405948.SeryN2_010100010697(PF02801)(ER)
405948.SeryN2_010100009660(PF00089)ER
405948.SeryN2_010100031395(PF09348)ER
405948.SeryN2_010100013122(PF00083)(ER)
405948.SeryN2_010100020793(PF00089)ER
405948.SeryN2_010100013944(PF13906)ER
405948.SeryN2_010100007277(PF04450)(ER); (plastid)
405948.SeryN2_010100032643(PF00698) (PF16197) (PF08659)not used
405948.SeryN2_010100006627(PF02163)ER
405948.SeryN2_010100020693(PF08530)ER
405948.SeryN2_010100001517(PF00083)(ER)
405948.SeryN2_010100014394(PF14765) (PF08659)
405948.SeryN2_010100033865(PF00012)(plastid)
405948.SeryN2_010100027176(PF00201)(mitochondrial)
405948.SeryN2_010100006107(PF02801) (PF16197)
405948.SeryN2_010100004412(PF02898)(mitochondrial)
405948.SeryN2_010100035740(PF13936)(mitochondrial)
405948.SeryN2_010100027541(PF04734) (PF17048)
405948.SeryN2_010100019408(PF00698) (PF08659)not used
405948.SeryN2_010100004677(PF00083)(mitochondrial)
405948.SeryN2_010100021762(PF00083)(plastid)
405948.SeryN2_010100036710(PF00698) (PF08659)
405948.SeryN2_010100002622(PF00083)(mitochondrial)
405948.SeryN2_010100001699(PF00582)(mitochondrial)
405948.SeryN2_010100018551(PF02801) (PF16197)
405948.SeryN2_010100022312(PF08530)(mitochondrial)
405948.SeryN2_010100002507(PF14765) (PF08659)not used
405948.SeryN2_010100034645(PF00089)(plastid)
405948.SeryN2_010100033680(PF11175)(plastid)
405948.SeryN2_010100020343(PF00582)(mitochondrial)
405948.SeryN2_010100009044(PF01532)(ER)
405948.SeryN2_010100036720(PF14765) (PF08659)not used
405948.SeryN2_010100029283(PF12897)
405948.SeryN2_010100008292(PF02575)
405948.SeryN2_010100004322(PF13649)
405948.SeryN2_010100014614(PF01756)
405948.SeryN2_010100032153(PF13936)
405948.SeryN2_010100034000(PF13649)
405948.SeryN2_010100024834(PF13649)
405948.SeryN2_010100036860(PF00582)not used
405948.SeryN2_010100019703(PF00582)not used
405948.SeryN2_010100020383(PF00582)
405948.SeryN2_010100031769(PF14216)
405948.SeryN2_010100005672(PF00083)
405948.SeryN2_010100004157(PF02575)
405948.SeryN2_010100024819(PF13649)
405948.SeryN2_010100013052(PF01025)
405948.SeryN2_010100013057(PF00012)
405948.SeryN2_010100022462(PF00698)
405948.SeryN2_010100010652(PF01474)
405948.SeryN2_010100011527(PF04138)
405948.SeryN2_010100025736PF14021
405948.SeryN2_010100034040(PF00083)
405948.SeryN2_010100022442(PF00083)
405948.SeryN2_010100035950(PF01959)
405948.SeryN2_010100005572(PF00582)
405948.SeryN2_010100005907(PF05147)
405948.SeryN2_010100006102(PF02801)
405948.SeryN2_010100035095(PF00348)
405948.SeryN2_010100022582(PF13580)
405948.SeryN2_010100027031(PF00012)
405948.SeryN2_010100026636(PF00348)
405948.SeryN2_010100001669(PF13649)
405948.SeryN2_010100006862(PF02801)
405948.SeryN2_010100013012(PF00083)
405948.SeryN2_010100033825(PF05147)
405948.SeryN2_010100001849(PF11991)
405948.SeryN2_010100019763(PF00582)
405948.SeryN2_010100033630(PF00582)not used
405948.SeryN2_010100016783(PF13649)
405948.SeryN2_010100009730(PF02898)
405948.SeryN2_010100008400(PF09664)
405948.SeryN2_010100002967(PF05147)
405948.SeryN2_010100034900(PF00089)
405948.SeryN2_010100011047(PF00083)
405948.SeryN2_010100011237(PF13649)
405948.SeryN2_010100033615(PF00582)
405948.SeryN2_010100034340(PF13649)
405948.SeryN2_010100009715(PF00582)
405948.SeryN2_010100001147(PF00348)
405948.SeryN2_010100023824(PF09664)
405948.SeryN2_010100006752(PF00089)
405948.SeryN2_010100031058(PF09265)
405948.SeryN2_010100002537(PF00201)
405948.SeryN2_010100030518(PF02575)
405948.SeryN2_010100000565(PF13649)
405948.SeryN2_010100010532(PF13580)
405948.SeryN2_010100031934(PF02575)
405948.SeryN2_010100009960(PF00012)
405948.SeryN2_010100009965(PF01025)
405948.SeryN2_010100029518(PF00582)
405948.SeryN2_010100002512(PF02801)
405948.SeryN2_010100007362(PF13649)
405948.SeryN2_010100013267(PF13580)
405948.SeryN2_010100010045(PF00089)
405948.SeryN2_010100013097(PF00012)
405948.SeryN2_010100010702(PF01756)
405948.SeryN2_010100010257(PF00582)
405948.SeryN2_010100021492(PF00383)
405948.SeryN2_010100036250(PF00012)not used
405948.SeryN2_010100026386(PF03070)
405948.SeryN2_010100037120(PF16197)not used
405948.SeryN2_010100032408(PF08530)
405948.SeryN2_010100007172(PF00348)
405948.SeryN2_010100012472(PF02801)
405948.SeryN2_010100003792(PF00383)
405948.SeryN2_010100016768(PF13649)
405948.SeryN2_010100021742(PF05719)
405948.SeryN2_010100025716(PF01129)
405948.SeryN2_010100009670(PF01025)
405948.SeryN2_010100035425(PF00089)
405948.SeryN2_010100001914(PF00083)
405948.SeryN2_010100005587PF14021not used
405948.SeryN2_010100018581(PF13936)
405948.SeryN2_010100000755(PF13649)
405948.SeryN2_010100020978(PF03803)
405948.SeryN2_010100020413(PF00582)
405948.SeryN2_010100037165(PF13936)
405948.SeryN2_010100012007(PF00383)
405948.SeryN2_010100000225(PF00582)
405948.SeryN2_010100018176(PF00083)
405948.SeryN2_010100006672(PF02575)
405948.SeryN2_010100017675(PF13649)
405948.SeryN2_010100023323(PF04505)
405948.SeryN2_010100027831(PF13649)
405948.SeryN2_010100020433(PF02358)
405948.SeryN2_010100020898(PF02358)
405948.SeryN2_010100010402(PF13649)
405948.SeryN2_010100026491(PF00083)
405948.SeryN2_010100020158(PF02163)
405948.SeryN2_010100020338(PF00582)
405948.SeryN2_010100020333(PF00582)
405948.SeryN2_010100023153(PF02801)
405948.SeryN2_010100019201(PF00383)
405948.SeryN2_010100018631(PF02358)
405948.SeryN2_010100019923(PF00582)
405948.SeryN2_010100009540(PF05719)
405948.SeryN2_010100011592(PF05719)
405948.SeryN2_010100016318(PF13649)
405948.SeryN2_010100026211(PF08659)
405948.SeryN2_010100025351(PF13649)
405948.SeryN2_010100003712(PF11175)
405948.SeryN2_010100034695(PF02575)
405948.SeryN2_010100016453(PF00012)
405948.SeryN2_010100025531(PF13649)
405948.SeryN2_010100029558(PF00083)
405948.SeryN2_010100024374(PF13649)
405948.SeryN2_010100027126(PF13649)
405948.SeryN2_010100010997(PF00383)
405948.SeryN2_010100037095(PF16197)
405948.SeryN2_010100024584(PF13649)
405948.SeryN2_010100024589(PF13649)
405948.SeryN2_010100006177(PF00891)
405948.SeryN2_010100023328(PF04505)
405948.SeryN2_010100003882(PF00089)
405948.SeryN2_010100022432(PF00083)
405948.SeryN2_010100018076(PF00891)
405948.SeryN2_010100019713(PF00582)
405948.SeryN2_010100019718(PF00582)
405948.SeryN2_010100019723(PF00582)
405948.SeryN2_010100007202(PF01474)
405948.SeryN2_010100007752PF08213not used
405948.SeryN2_010100020393(PF00582)
405948.SeryN2_010100023138(PF00698)
405948.SeryN2_010100003317(PF12897)not used
405948.SeryN2_010100019523(PF01474)
405948.SeryN2_010100021472(PF04138)
405948.SeryN2_010100033855(PF13936)
405948.SeryN2_010100016883(PF01474)
405948.SeryN2_010100037205(PF00698)not used
405948.SeryN2_010100003887(PF02773)
405948.SeryN2_010100010837(PF00348)
405948.SeryN2_010100025551(PF00083)
405948.SeryN2_010100033580(PF06032)
405948.SeryN2_010100007437(PF13649)
405948.SeryN2_010100003432(PF13580)
405948.SeryN2_010100019758(PF00582)
405948.SeryN2_010100019753(PF02163)
405948.SeryN2_010100002219(PF00201)
405948.SeryN2_010100034910(PF00089)
405948.SeryN2_010100005742(PF00348)
405948.SeryN2_010100035735(PF00083)
405948.SeryN2_010100004162(PF00201)
405948.SeryN2_010100018691(PF13649)
405948.SeryN2_010100021562(PF00083)
405948.SeryN2_010100015093(PF00383)
405948.SeryN2_010100035945(PF01959)
405948.SeryN2_010100017911(PF00083)
405948.SeryN2_010100018911(PF13649)
405948.SeryN2_010100027026PF10712not used
405948.SeryN2_010100029543(PF00582)
405948.SeryN2_010100029548(PF00582)
405948.SeryN2_010100008087(PF00348)
405948.SeryN2_010100036920(PF02575)
405948.SeryN2_010100033350(PF00698)
405948.SeryN2_010100006727(PF00089)
405948.SeryN2_010100019858(PF00582)
405948.SeryN2_010100016733(PF00083)
405948.SeryN2_010100019376(PF02575)
405948.SeryN2_010100003212(PF13649)
405948.SeryN2_010100019643(PF00083)
405948.SeryN2_010100013257(PF13580)
405948.SeryN2_010100027736(PF13649)
405948.SeryN2_010100011017(PF00083)
405948.SeryN2_010100034830(PF13936)
405948.SeryN2_010100024009(PF02575)
405948.SeryN2_010100019813(PF00582)
405948.SeryN2_010100011242(PF02773)
405948.SeryN2_010100003277(PF00348)
405948.SeryN2_010100016738(PF00582)
405948.SeryN2_010100022537(PF02773)not used
405948.SeryN2_010100018491(PF08530)
405948.SeryN2_010100021270(PF13649)
405948.SeryN2_010100019833(PF00582)
405948.SeryN2_010100030483(PF00083)
405948.SeryN2_010100027361(PF00201)
405948.SeryN2_010100032623(PF13649)
405948.SeryN2_010100022282(PF04138)
405948.SeryN2_010100029693(PF02801)
405948.SeryN2_010100024044(PF04138)
405948.SeryN2_010100014104(PF13649)
405948.SeryN2_010100032980(PF00891)
405948.SeryN2_010100018106(PF05147)
405948.SeryN2_010100007082(PF00012)
405948.SeryN2_010100006062(PF00083)
405948.SeryN2_010100027571(PF00755)
405948.SeryN2_010100022132(PF00083)
405948.SeryN2_010100025911(PF13649)
405948.SeryN2_010100018166(PF00083)
405948.SeryN2_010100003822(PF00383)
405948.SeryN2_010100036165(PF02163)not used
405948.SeryN2_010100036705(PF00698)
405948.SeryN2_010100005437(PF00083)
405948.SeryN2_010100016818(PF00383)
405948.SeryN2_010100019433(PF02801)
405948.SeryN2_010100030428(PF00089)
405948.SeryN2_010100019893(PF00582)
405948.SeryN2_010100036725(PF02801)
405948.SeryN2_010100026016(PF04138)
405948.SeryN2_010100014084(PF09825)
405948.SeryN2_010100027536(PF04734)
405948.SeryN2_010100013427(PF00383)
405948.SeryN2_010100033575(PF06032)
405948.SeryN2_010100033570(PF06032)
405948.SeryN2_010100022972(PF03070)
405948.SeryN2_010100004912(PF00012)
405948.SeryN2_010100016588(PF03070)
405948.SeryN2_010100019478(PF13649)
405948.SeryN2_010100020123(PF00083)
405948.SeryN2_010100028708(PF02575)
405948.SeryN2_010100015580(PF13649)
405948.SeryN2_010100001182(PF00083)

Detailed merged results for each protein sequence

Individual results for each protein sequence

Genome based results

Summary

  • Gram negative: NO (FDR = 0.5 %)
  • Functional Type III secretion system: N.D.
  • Functional Type IV secretion system: NO (FDR = 7.2 %)
  • Functional Type VI secretion system: N.D.

Individual results for each secretion system

Parameters:

==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================