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Genomes encoding eukaryotic-like proteins

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PF01025 GrpE

Copy number in non-pathogens:
Mean=1.11 Stddev=0.40

Genomes significantly enriched in this eukaryotic-like domain (ELD; score >= 4):

Genome Class* ELD score Number of proteins containing this domain
Nocardia yamanashiensis NBRC 100130 s 4 3
Herbidospora cretacea s 4 3
Verrucomicrobium sp. BvORR034 s 4 3
Nocardia inohanensis NBRC 100128 s 4 3
Nocardia higoensis NBRC 100133 s 4 3
Nocardia exalbida NBRC 100660 s 4 3
Gordonia aichiensis NBRC 108223 s 4 3
Actinomadura chibensis NBRC 106107 s 7 4
Listeria monocytogenes s 4 3
Propionibacterium freudenreichii s 4 3
Leptotrichia buccalis C-1013-b s 4 3
Gordonia bronchialis DSM 43247 s 4 3
Amycolatopsis orientalis DSM 46075 s 4 3
Geminocystis herdmanii PCC 6308 s 4 3
Calothrix sp. PCC 7103 s 4 3
Amycolatopsis benzoatilytica AK 16/65 s 4 3
Actinopolymorpha alba DSM 45243 s 4 3
Actinokineospora inagensis DSM 44258 s 4 3
Frankia discariae s 4 3
Frankia sp. EUN1f s 4 3
Afipia broomeae ATCC 49717 s 4 3
Phenylobacterium zucineum HLK1 s 4 3
Actinomadura madurae LIID-AJ290 s 4 3
Frankia sp. CpI1-S s 4 3
Frankia sp. CpI1-P s 4 3
Nocardia seriolae s 4 3
Lachnospiraceae bacterium AC2029 s 4 3
Saccharopolyspora rectivirgula s 4 3
Escherichia coli s 4 3
Nostoc sp. KVJ20 s 4 3
Nocardia seriolae s 4 3
Nocardia seriolae s 4 3
Amycolatopsis pretoriensis s 4 3
Lentzea kentuckyensis s 4 3
Nocardia seriolae s 4 3

*p=pathogen;s=symbiont

Release announcements

News

  • EffectiveDB genome mode fixed

    24.11.20
  • EFFECTIVEELD 5.2: EUKARYOTIC-LIKE DOMAIN PREDICTION UPGRADED TO PFAM 31

    20.08.17
  • EffectiveELD 5.1: Eukaryotic-like domain prediction upgraded to Pfam 29

    24.06.16

Latest publications

  • EffectiveDB-updates and novel features for a better annotation of bacterial secreted proteins and Type III, IV, VI secretion systems.
  • Prediction of microbial phenotypes based on comparative genomics.

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