Metamenu

Genomes encoding eukaryotic-like proteins

PF02575 YbaB/EbfC DNA-binding family

Copy number in non-pathogens:
Mean=1.16 Stddev=1.37

Genomes significantly enriched in this eukaryotic-like domain (ELD; score >= 4):

Genome Class* ELD score Number of proteins containing this domain
Nocardia africana NBRC 100379 s 5 8
Nocardia anaemiae NBRC 100462 s 7 11
Nocardia elegans NBRC 108235 s 4 7
Nocardia mexicana NBRC 108244 s 9 14
Nocardia kruczakiae NBRC 101016 s 4 7
Nocardia puris NBRC 108233 s 7 11
Nocardia vaccinii NBRC 15922 s 7 11
Nocardia vermiculata NBRC 100427 s 4 7
Nocardia asiatica NBRC 100129 s 6 10
Nocardia niigatensis NBRC 100131 s 4 7
Nocardia araoensis NBRC 100135 s 4 7
Nocardia pneumoniae NBRC 100136 s 7 11
Nocardia paucivorans NBRC 100373 s 5 9
Nocardia abscessus NBRC 100374 s 4 7
Nocardia thailandica NBRC 100428 s 5 8
Nocardia exalbida NBRC 100660 s 4 7
Nocardia tenerifensis NBRC 101015 s 6 10
Nocardia otitidiscaviarum NBRC 14405 s 4 7
Nocardia transvalensis NBRC 15921 s 7 11
Actinosynnema mirum DSM 43827 s 10 15
Micromonospora sp. L5 s 5 9
Kutzneria sp. 744 s 4 7
Amycolatopsis orientalis DSM 46075 s 11 17
Amycolatopsis benzoatilytica AK 16/65 s 12 18
Actinopolymorpha alba DSM 45243 s 5 8
Actinokineospora inagensis DSM 44258 s 6 10
Saccharomonospora viridis DSM 43017 s 6 10
Segniliparus rotundus DSM 44985 s 6 10
Nocardia brasiliensis ATCC 700358 p 5 9
Nocardia nova SH22a s 4 7
Actinoalloteichus cyanogriseus s 5 8
Lentzea albidocapillata s 8 13
Amycolatopsis jejuensis s 4 7
Actinoalloteichus cyanogriseus s 5 8
Micromonospora chokoriensis s 5 9
Prauserella rugosa s 5 9
Actinoalloteichus hymeniacidonis s 6 10
Micromonospora chokoriensis s 4 7
Lentzea albidocapillata s 8 13
Amycolatopsis kentuckyensis s 7 12
Amycolatopsis lexingtonensis s 7 12
Amycolatopsis pretoriensis s 9 14
Lentzea kentuckyensis s 8 13

*p=pathogen;s=symbiont