Effective results for Verrucomicrobiae bacterium DG1235 (eggnog40)

Summary

Number of putative secreted proteins: 229
- Predicted by T4SEpre: 0
- Predicted by EffectiveELD: 48 eukaryotic-like domains, contained in 229 proteins (48 high, 181 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): None

Protein based results

Putative secreted proteins (weak evidence indicated by parentheses)

ProteinEffectiveT3EffectiveCCBDT4SEpreEffectiveELDPredotar
382464.VDG1235_2847PF13517 PF07593 (PF13927)ER
382464.VDG1235_1121PF13517 PF07593ER; (ER)
382464.VDG1235_1265PF13517 PF07593ER
382464.VDG1235_2369PF13517 PF07593ER
382464.VDG1235_1442PF13517 PF07593ER
382464.VDG1235_3925PF13517 PF07593ER
382464.VDG1235_4273PF13517 PF07593 (PF07679)(ER)
382464.VDG1235_4919PF13517 PF07593(ER)
382464.VDG1235_664PF13517 PF07593ER
382464.VDG1235_2299PF13517 PF07593ER
382464.VDG1235_3051PF13517 PF07593ER
382464.VDG1235_1329PF13517 PF07593ER
382464.VDG1235_821PF13517 PF07593ER
382464.VDG1235_1003(PF13927) (PF07679)ER
382464.VDG1235_3092PF13517 PF07593ER
382464.VDG1235_1057(PF02424)(mitochondrial)
382464.VDG1235_2751(PF12704)ER
382464.VDG1235_3627(PF04616)ER
382464.VDG1235_1902(PF13927)ER
382464.VDG1235_793(PF12704)(ER)
382464.VDG1235_2105(PF04616)ER
382464.VDG1235_3295(PF00331)ER
382464.VDG1235_3985(PF06439)ER
382464.VDG1235_3964(PF04616)ER
382464.VDG1235_1467(PF02156)ER
382464.VDG1235_1927(PF04616)ER; (ER)
382464.VDG1235_1137(PF02424)mitochondrial
382464.VDG1235_3356(PF16403)mitochondrial
382464.VDG1235_3351(PF04366)ER
382464.VDG1235_475(PF08840)ER
382464.VDG1235_305(PF03544)ER
382464.VDG1235_1608(PF16499)(mitochondrial)
382464.VDG1235_1637(PF02156)ER
382464.VDG1235_169(PF03544)ER
382464.VDG1235_978(PF04616)ER
382464.VDG1235_2954(PF12704)(mitochondrial)
382464.VDG1235_684(PF03629)ER
382464.VDG1235_998PF07632ER
382464.VDG1235_4667(PF12704)(ER)
382464.VDG1235_2219(PF04616)ER
382464.VDG1235_2386(PF12704)ER
382464.VDG1235_1622(PF16403)ER
382464.VDG1235_1623(PF04616)ER
382464.VDG1235_743PF02259ER
382464.VDG1235_964(PF03190)ER
382464.VDG1235_1719(PF06439)ER
382464.VDG1235_2028(PF06439)ER
382464.VDG1235_2025(PF15979)ER
382464.VDG1235_987(PF07998)ER
382464.VDG1235_4520(PF12704)ER
382464.VDG1235_4419(PF03629)ER
382464.VDG1235_2719PF11074mitochondrial
382464.VDG1235_1368(PF06439)ER
382464.VDG1235_2449(PF06965)ER; (ER)
382464.VDG1235_1898(PF12704)(mitochondrial)
382464.VDG1235_2034(PF06965)(ER)
382464.VDG1235_3813(PF12704)ER
382464.VDG1235_3811(PF03544)ER
382464.VDG1235_3815(PF04616)ER
382464.VDG1235_1769(PF12704)(mitochondrial)
382464.VDG1235_1763(PF04616)ER
382464.VDG1235_3545(PF06439)ER
382464.VDG1235_4605(PF03544)ER
382464.VDG1235_4603(PF16499)ER
382464.VDG1235_504(PF05548)ER
382464.VDG1235_727(PF12704)(mitochondrial); mitochondrial
382464.VDG1235_344PF13517ER
382464.VDG1235_3808PF02018mitochondrial; (mitochondrial)
382464.VDG1235_2287PF02018ER
382464.VDG1235_1412PF07632ER
382464.VDG1235_4278(PF15892)ER
382464.VDG1235_4612(PF02156)ER
382464.VDG1235_1346(PF12704)(mitochondrial)
382464.VDG1235_4916(PF03629)ER
382464.VDG1235_2180(PF06965)ER
382464.VDG1235_1198(PF03544)ER
382464.VDG1235_528PF13517 PF07593(ER)
382464.VDG1235_2063PF07632ER
382464.VDG1235_967(PF12704)(mitochondrial)
382464.VDG1235_2088(PF00331)ER
382464.VDG1235_878(PF16317)(ER)
382464.VDG1235_1694(PF06439)mitochondrial
382464.VDG1235_1693(PF12704)mitochondrial; (mitochondrial)
382464.VDG1235_464PF13517(mitochondrial)
382464.VDG1235_3211(PF12704)mitochondrial
382464.VDG1235_3857(PF03629)ER
382464.VDG1235_285(PF06439)ER
382464.VDG1235_2092PF13517 PF07593(ER)
382464.VDG1235_840(PF03544)ER
382464.VDG1235_2892PF02018ER
382464.VDG1235_3204(PF12704)ER; (ER)
382464.VDG1235_274(PF13204)ER
382464.VDG1235_271(PF15892)ER
382464.VDG1235_292PF02018ER
382464.VDG1235_2931PF02018ER
382464.VDG1235_1302(PF06439)ER
382464.VDG1235_3065(PF12704)(mitochondrial)
382464.VDG1235_3274PF07632ER
382464.VDG1235_1835(PF06439)ER
382464.VDG1235_3890(PF00331)ER
382464.VDG1235_4555(PF00331)ER
382464.VDG1235_4310(PF03544)ER
382464.VDG1235_4771(PF12704)(ER); (mitochondrial)
382464.VDG1235_1002(PF13347)ER
382464.VDG1235_2349(PF00331)(mitochondrial)
382464.VDG1235_2431(PF16403)ER
382464.VDG1235_2327(PF03629)(mitochondrial)
382464.VDG1235_2223(PF03629)ER
382464.VDG1235_2220(PF12704)ER
382464.VDG1235_907PF13517mitochondrial; (mitochondrial)
382464.VDG1235_121(PF03190)ER
382464.VDG1235_634PF13517ER
382464.VDG1235_638(PF02156)ER
382464.VDG1235_836(PF12006)ER
382464.VDG1235_1254(PF00331)ER
382464.VDG1235_2910(PF00331)ER
382464.VDG1235_2913(PF03544)ER
382464.VDG1235_4300(PF12704)ER
382464.VDG1235_2689(PF04366)ER
382464.VDG1235_4971(PF03190)ER
382464.VDG1235_2351PF13517ER
382464.VDG1235_2231(PF03544)ER
382464.VDG1235_930(PF00685)mitochondrial; (mitochondrial)
382464.VDG1235_1240(PF16499)ER
382464.VDG1235_4572(PF12704)(mitochondrial)
382464.VDG1235_4209(PF04616)(ER)
382464.VDG1235_95(PF02424)ER
382464.VDG1235_1119(PF02156)ER
382464.VDG1235_3746(PF06439)ER
382464.VDG1235_149(PF04366)ER
382464.VDG1235_1275(PF16760)ER
382464.VDG1235_4749(PF00685)(mitochondrial)
382464.VDG1235_1293PF13517 PF07593
382464.VDG1235_3349(PF03522)(ER)
382464.VDG1235_2588(PF15979)(ER)
382464.VDG1235_1604(PF03544)(mitochondrial)
382464.VDG1235_4091PF02018(plastid)
382464.VDG1235_2440PF13517 PF07593
382464.VDG1235_1379PF02018 PF13517
382464.VDG1235_4287PF13517 PF07593
382464.VDG1235_4823PF13517 PF02018
382464.VDG1235_3137PF13517 PF07593
382464.VDG1235_1328(PF04432) (PF04422)
382464.VDG1235_75(PF04432) (PF04422)
382464.VDG1235_1334(PF04432) (PF04422)
382464.VDG1235_276PF02018(plastid)
382464.VDG1235_4812(PF12704)(ER)
382464.VDG1235_4972PF13517 PF07593not used
382464.VDG1235_484(PF15892)plastid
382464.VDG1235_4362(PF13347)
382464.VDG1235_3534(PF13347)
382464.VDG1235_4042(PF00331)
382464.VDG1235_1056(PF16499)
382464.VDG1235_2213(PF05185)
382464.VDG1235_551(PF03629)
382464.VDG1235_172(PF03544)
382464.VDG1235_1468(PF00176)
382464.VDG1235_3431(PF02424)
382464.VDG1235_3432(PF13366)
382464.VDG1235_1595(PF08547)
382464.VDG1235_1286(PF03544)
382464.VDG1235_1130(PF03544)
382464.VDG1235_2173(PF04616)
382464.VDG1235_2179(PF00176)
382464.VDG1235_2178(PF00176)
382464.VDG1235_947(PF12704)
382464.VDG1235_303PF07534
382464.VDG1235_3168(PF12038)
382464.VDG1235_991(PF12704)
382464.VDG1235_2945(PF12006)
382464.VDG1235_2949(PF13347)
382464.VDG1235_2385(PF13204)
382464.VDG1235_1160(PF04616)
382464.VDG1235_3002(PF00176)
382464.VDG1235_3143(PF12704)
382464.VDG1235_223(PF03544)
382464.VDG1235_350(PF13366)
382464.VDG1235_1762(PF13347)
382464.VDG1235_2852PF02018
382464.VDG1235_4113(PF13366)
382464.VDG1235_1886(PF04305)
382464.VDG1235_3938PF11074
382464.VDG1235_3931(PF03544)
382464.VDG1235_4070(PF00331)
382464.VDG1235_4274(PF08840)
382464.VDG1235_3552(PF03190)
382464.VDG1235_2739(PF07646)
382464.VDG1235_2516(PF03544)
382464.VDG1235_408(PF03629)
382464.VDG1235_403(PF06965)
382464.VDG1235_390PF09488
382464.VDG1235_1982(PF02424)
382464.VDG1235_4597(PF03544)
382464.VDG1235_4590(PF01704)
382464.VDG1235_4620(PF13366)
382464.VDG1235_1355(PF12704)
382464.VDG1235_2060(PF04616)
382464.VDG1235_256(PF00176)
382464.VDG1235_3558(PF04616)
382464.VDG1235_3109(PF00176)
382464.VDG1235_3102(PF04616)
382464.VDG1235_3105(PF04305)
382464.VDG1235_846(PF03544)
382464.VDG1235_3455(PF00176)
382464.VDG1235_1337(PF08547)
382464.VDG1235_2410(PF04616)
382464.VDG1235_294(PF04616)
382464.VDG1235_101(PF13347)
382464.VDG1235_4499(PF12704)
382464.VDG1235_1307(PF13875)
382464.VDG1235_919(PF04616)
382464.VDG1235_1536(PF13366)
382464.VDG1235_825(PF13347)
382464.VDG1235_2929(PF00331)
382464.VDG1235_4318(PF04616)
382464.VDG1235_3093PF02018
382464.VDG1235_3880PF13517
382464.VDG1235_126(PF13366)
382464.VDG1235_1492(PF13347)
382464.VDG1235_4304(PF03803)
382464.VDG1235_2350(PF13347)
382464.VDG1235_2236(PF00685)
382464.VDG1235_159(PF01704)
382464.VDG1235_3518(PF00176)
382464.VDG1235_2126(PF04616)
382464.VDG1235_98(PF00685)
382464.VDG1235_1668(PF12704)
382464.VDG1235_1666(PF02156)
382464.VDG1235_1472PF12689

Detailed merged results for each protein sequence

Individual results for each protein sequence

Genome based results

Summary

  • Gram negative: YES (FDR = 0.5 %)
  • Functional Type III secretion system: NO (FDR = 12.5 %)
  • Functional Type IV secretion system: NO (FDR = 7.2 %)
  • Functional Type VI secretion system: NO (FDR = 7.7 %)

Individual results for each secretion system

Parameters:

==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================