Effective results for Geobacter uraniireducens Rf4 (eggnog40)
Summary
Number of putative secreted proteins: 427
- Predicted by T4SEpre: 0
- Predicted by EffectiveELD: 61 eukaryotic-like domains, contained in 427 proteins (3 high, 424 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): (Type VI)
Protein based results
Putative secreted proteins (weak evidence indicated by parentheses)
| Protein | EffectiveT3 | EffectiveCCBD | T4SEpre | EffectiveELD | Predotar |
|---|---|---|---|---|---|
| 351605.Gura_1112 | (PF13540) (PF05345) | ER | |||
| 351605.Gura_0886 | (PF01058) (PF12838) | (mitochondrial) | |||
| 351605.Gura_3039 | (PF02754) (PF13237) | (ER) | |||
| 351605.Gura_3569 | (PF13353) (PF04055) | (mitochondrial) | |||
| 351605.Gura_4119 | (PF16199) (PF04055) | mitochondrial; (mitochondrial) | |||
| 351605.Gura_0124 | (PF02310) (PF04055) | (mitochondrial) | |||
| 351605.Gura_2425 | (PF13353) (PF04055) | (mitochondrial) | |||
| 351605.Gura_1152 | (PF00158) (PF02954) | (mitochondrial) | |||
| 351605.Gura_3593 | (PF02310) (PF04055) | (mitochondrial) | |||
| 351605.Gura_1298 | (PF02310) (PF04055) | (mitochondrial) | |||
| 351605.Gura_1962 | (PF13353) (PF04055) | (mitochondrial) | |||
| 351605.Gura_0505 | (PF13353) (PF04055) | (mitochondrial); mitochondrial | |||
| 351605.Gura_0504 | (PF02310) (PF04055) | (mitochondrial) | |||
| 351605.Gura_0506 | (PF13353) (PF04055) | mitochondrial | |||
| 351605.Gura_2484 | (PF12849) | ER | |||
| 351605.Gura_0201 | (PF13174) | ER | |||
| 351605.Gura_2558 | (PF12849) | ER | |||
| 351605.Gura_1756 | (PF01966) | ER | |||
| 351605.Gura_3842 | (PF05140) | ER | |||
| 351605.Gura_0575 | (PF05048) | ER | |||
| 351605.Gura_0794 | (PF13353) (PF04055) | (mitochondrial) | |||
| 351605.Gura_3544 | (PF12849) | ER | |||
| 351605.Gura_1161 | PF10342 | ER | |||
| 351605.Gura_1562 | (PF02754) | (mitochondrial) | |||
| 351605.Gura_3838 | (PF01436) | ER | |||
| 351605.Gura_2803 | (PF01966) | ER | |||
| 351605.Gura_3316 | (PF05345) | ER | |||
| 351605.Gura_2159 | (PF13174) | mitochondrial; (mitochondrial) | |||
| 351605.Gura_0522 | (PF05140) | ER | |||
| 351605.Gura_2207 | (PF01880) | (mitochondrial) | |||
| 351605.Gura_1775 | (PF04187) | ER | |||
| 351605.Gura_1793 | (PF01966) | ER | |||
| 351605.Gura_1792 | (PF13540) | ER | |||
| 351605.Gura_1791 | (PF13600) | ER | |||
| 351605.Gura_2367 | (PF13174) | ER | |||
| 351605.Gura_3561 | (PF01966) | ER | |||
| 351605.Gura_0307 | (PF05345) | ER | |||
| 351605.Gura_3961 | (PF04055) | (mitochondrial) | |||
| 351605.Gura_0052 | (PF12849) | ER | |||
| 351605.Gura_0051 | (PF13426) | ER | |||
| 351605.Gura_0056 | (PF05990) | ER | |||
| 351605.Gura_0373 | (PF13540) | ER | |||
| 351605.Gura_3024 | (PF13426) | ER | |||
| 351605.Gura_3022 | (PF05990) | (mitochondrial) | |||
| 351605.Gura_1550 | (PF13426) | ER | |||
| 351605.Gura_0118 | (PF00158) (PF13426) (PF02954) | ||||
| 351605.Gura_2767 | (PF05048) | ER | |||
| 351605.Gura_4005 | (PF13426) | (ER) | |||
| 351605.Gura_0218 | (PF13426) | ER | |||
| 351605.Gura_1859 | (PF13353) (PF04055) | (plastid) | |||
| 351605.Gura_0923 | (PF01436) | ER | |||
| 351605.Gura_2758 | (PF01436) | (mitochondrial) | |||
| 351605.Gura_2755 | (PF01436) | ER | |||
| 351605.Gura_4348 | (PF00549) | (mitochondrial) | |||
| 351605.Gura_0265 | (PF13426) | ER | |||
| 351605.Gura_3615 | (PF04055) | mitochondrial | |||
| 351605.Gura_2254 | (PF02010) | ER | |||
| 351605.Gura_2414 | (PF02754) | ER | |||
| 351605.Gura_1509 | (PF12849) | ER | |||
| 351605.Gura_1507 | (PF12849) | ER | |||
| 351605.Gura_0475 | (PF12849) | ER | |||
| 351605.Gura_3608 | (PF02310) (PF04055) | (plastid) | |||
| 351605.Gura_3422 | (PF13600) | ER | |||
| 351605.Gura_2649 | (PF12838) | mitochondrial | |||
| 351605.Gura_2391 | (PF05048) | (ER) | |||
| 351605.Gura_4383 | (PF05140) | ER | |||
| 351605.Gura_1286 | (PF13426) | mitochondrial | |||
| 351605.Gura_1518 | (PF12849) | ER | |||
| 351605.Gura_0802 | (PF12838) | mitochondrial | |||
| 351605.Gura_0366 | (PF13174) | ER | |||
| 351605.Gura_1816 | (PF05345) | ER | |||
| 351605.Gura_2048 | (PF13431) | ER | |||
| 351605.Gura_1065 | (PF03144) | mitochondrial; (mitochondrial) | |||
| 351605.Gura_2700 | (PF13174) | ER | |||
| 351605.Gura_2875 | (PF00665) | (mitochondrial) | |||
| 351605.Gura_2679 | (PF13426) | ER | |||
| 351605.Gura_1729 | (PF13426) | ER | |||
| 351605.Gura_3462 | (PF04055) | mitochondrial | |||
| 351605.Gura_1006 | (PF01966) | ER | |||
| 351605.Gura_0513 | (PF02310) | ER | |||
| 351605.Gura_2583 | (PF13174) | ER | |||
| 351605.Gura_2107 | (PF13436) | ER | |||
| 351605.Gura_1100 | (PF01966) | ER | |||
| 351605.Gura_1213 | (PF02754) | ER | |||
| 351605.Gura_0509 | (PF13353) (PF04055) | (mitochondrial) | |||
| 351605.Gura_3538 | (PF00158) (PF02954) | ||||
| 351605.Gura_3335 | (PF00158) (PF02954) | ||||
| 351605.Gura_1024 | (PF00158) (PF02954) | ||||
| 351605.Gura_1023 | (PF04187) | mitochondrial | |||
| 351605.Gura_4090 | (PF02310) (PF04055) | ||||
| 351605.Gura_3998 | (PF00549) (PF08442) | ||||
| 351605.Gura_0085 | (PF00158) (PF02954) | ||||
| 351605.Gura_0155 | (PF00549) (PF08442) | ||||
| 351605.Gura_2631 | (PF03083) | (mitochondrial) | |||
| 351605.Gura_2549 | (PF13353) (PF04055) | ||||
| 351605.Gura_2018 | (PF00158) (PF02954) | ||||
| 351605.Gura_1302 | (PF04055) | (mitochondrial) | |||
| 351605.Gura_3559 | (PF13353) (PF04055) | ||||
| 351605.Gura_3557 | (PF01012) | (ER) | |||
| 351605.Gura_3554 | (PF01012) | (mitochondrial) | |||
| 351605.Gura_3318 | (PF13565) (PF00665) | ||||
| 351605.Gura_2375 | (PF00158) (PF02954) | ||||
| 351605.Gura_2204 | (PF13565) (PF00665) | ||||
| 351605.Gura_4418 | (PF00158) (PF02954) | ||||
| 351605.Gura_0318 | (PF13565) (PF00665) | ||||
| 351605.Gura_1313 | (PF00158) (PF02954) | ||||
| 351605.Gura_1959 | (PF00158) (PF02954) | ||||
| 351605.Gura_0132 | (PF01966) | (plastid) | |||
| 351605.Gura_2812 | (PF00025) | (mitochondrial) | |||
| 351605.Gura_4335 | (PF02310) (PF04055) | ||||
| 351605.Gura_2963 | (PF02310) (PF04055) | ||||
| 351605.Gura_0376 | (PF02310) (PF04055) | ||||
| 351605.Gura_0372 | (PF01909) | (mitochondrial) | |||
| 351605.Gura_3027 | (PF13565) (PF00665) | ||||
| 351605.Gura_3151 | (PF16199) (PF04055) | ||||
| 351605.Gura_3375 | (PF00158) (PF02954) | ||||
| 351605.Gura_3486 | (PF00549) (PF08442) | ||||
| 351605.Gura_2171 | (PF00158) (PF02954) | ||||
| 351605.Gura_3571 | (PF13353) (PF04055) | ||||
| 351605.Gura_3572 | (PF00158) (PF02954) | ||||
| 351605.Gura_1428 | (PF00158) (PF02954) | ||||
| 351605.Gura_0687 | (PF13426) | (ER) | |||
| 351605.Gura_3740 | (PF00158) (PF02954) | ||||
| 351605.Gura_2697 | (PF00158) (PF02954) | ||||
| 351605.Gura_4176 | (PF00158) (PF02954) | ||||
| 351605.Gura_0925 | (PF00158) (PF02954) | ||||
| 351605.Gura_3751 | (PF13353) (PF12345) | ||||
| 351605.Gura_2751 | (PF00158) (PF02954) | ||||
| 351605.Gura_4345 | (PF13565) (PF00665) | ||||
| 351605.Gura_4349 | (PF00549) (PF08442) | ||||
| 351605.Gura_1840 | (PF00158) (PF02954) | ||||
| 351605.Gura_0916 | (PF00158) (PF02954) | ||||
| 351605.Gura_3611 | (PF02310) (PF04055) | ||||
| 351605.Gura_3614 | (PF02310) (PF04055) | ||||
| 351605.Gura_2419 | (PF13353) (PF04055) | ||||
| 351605.Gura_2415 | (PF01012) (PF13237) | ||||
| 351605.Gura_3924 | (PF02661) | (ER) | |||
| 351605.Gura_3928 | (PF13565) (PF00665) | ||||
| 351605.Gura_0495 | (PF00158) (PF02954) | ||||
| 351605.Gura_0014 | (PF13353) (PF04055) | ||||
| 351605.Gura_2086 | (PF01909) | (mitochondrial) | |||
| 351605.Gura_2062 | (PF13426) | (mitochondrial) | |||
| 351605.Gura_4367 | (PF13565) (PF00665) | ||||
| 351605.Gura_4363 | (PF00158) (PF02954) | ||||
| 351605.Gura_1600 | (PF02754) (PF13237) | ||||
| 351605.Gura_1603 | (PF01012) (PF02754) | ||||
| 351605.Gura_3389 | (PF00158) (PF02954) | ||||
| 351605.Gura_3415 | (PF00158) (PF02954) | ||||
| 351605.Gura_2651 | (PF01058) | (mitochondrial) | |||
| 351605.Gura_2387 | (PF00158) (PF02954) | ||||
| 351605.Gura_3391 | (PF00158) (PF02954) | ||||
| 351605.Gura_3625 | (PF00158) (PF02954) | ||||
| 351605.Gura_1802 | (PF00158) (PF02954) | ||||
| 351605.Gura_1240 | (PF12256) | (ER) | |||
| 351605.Gura_2914 | (PF00158) (PF02954) | ||||
| 351605.Gura_2671 | (PF00158) (PF02954) | ||||
| 351605.Gura_2678 | (PF00158) (PF02954) | ||||
| 351605.Gura_4192 | (PF00158) (PF02954) | ||||
| 351605.Gura_1238 | (PF13565) (PF00665) | ||||
| 351605.Gura_3089 | (PF02310) (PF04055) | ||||
| 351605.Gura_2840 | (PF00158) (PF02954) | ||||
| 351605.Gura_2023 | (PF13426) | (mitochondrial) | |||
| 351605.Gura_2116 | (PF00158) (PF02954) | ||||
| 351605.Gura_0516 | (PF02310) (PF04055) | ||||
| 351605.Gura_2324 | (PF00158) (PF02954) | ||||
| 351605.Gura_1961 | (PF13353) (PF04055) | ||||
| 351605.Gura_1369 | (PF02310) (PF04055) | ||||
| 351605.Gura_3661 | (PF16199) (PF04055) | ||||
| 351605.Gura_3203 | (PF01909) | ||||
| 351605.Gura_0208 | (PF04055) | ||||
| 351605.Gura_3533 | (PF13426) | ||||
| 351605.Gura_2550 | (PF05345) | ||||
| 351605.Gura_4251 | (PF00078) | ||||
| 351605.Gura_3999 | (PF00549) | ||||
| 351605.Gura_1200 | (PF01909) | ||||
| 351605.Gura_1203 | (PF12838) | ||||
| 351605.Gura_1209 | (PF04055) | ||||
| 351605.Gura_0156 | (PF00549) | ||||
| 351605.Gura_0409 | (PF01909) | ||||
| 351605.Gura_0152 | (PF02754) | ||||
| 351605.Gura_0150 | (PF02754) | ||||
| 351605.Gura_3056 | (PF04765) | ||||
| 351605.Gura_2498 | (PF01966) | ||||
| 351605.Gura_3302 | (PF04383) | ||||
| 351605.Gura_2014 | (PF13426) | ||||
| 351605.Gura_2541 | (PF01966) | ||||
| 351605.Gura_1164 | (PF02915) | ||||
| 351605.Gura_4134 | (PF01610) | ||||
| 351605.Gura_4139 | (PF00078) | ||||
| 351605.Gura_1569 | (PF12838) | ||||
| 351605.Gura_1566 | (PF12345) | ||||
| 351605.Gura_1767 | (PF04055) | ||||
| 351605.Gura_1781 | (PF01966) | ||||
| 351605.Gura_1788 | (PF00665) | ||||
| 351605.Gura_3824 | (PF00665) | ||||
| 351605.Gura_3941 | (PF12838) | ||||
| 351605.Gura_0561 | (PF01610) | ||||
| 351605.Gura_2156 | (PF00078) | ||||
| 351605.Gura_2376 | (PF00078) | ||||
| 351605.Gura_2373 | (PF13426) | ||||
| 351605.Gura_2570 | (PF01966) | ||||
| 351605.Gura_1499 | (PF01715) | ||||
| 351605.Gura_0559 | (PF00665) | ||||
| 351605.Gura_4300 | (PF04326) | ||||
| 351605.Gura_4415 | (PF02915) | ||||
| 351605.Gura_4412 | (PF03144) | ||||
| 351605.Gura_0556 | (PF04383) | ||||
| 351605.Gura_4238 | (PF12838) | ||||
| 351605.Gura_0319 | (PF01610) | ||||
| 351605.Gura_1771 | (PF01715) | ||||
| 351605.Gura_0426 | (PF02661) | ||||
| 351605.Gura_0136 | (PF01739) | ||||
| 351605.Gura_2815 | (PF03144) | ||||
| 351605.Gura_0420 | (PF01991) | ||||
| 351605.Gura_3037 | (PF01012) | ||||
| 351605.Gura_3038 | (PF01012) | ||||
| 351605.Gura_3491 | PF16575 | ||||
| 351605.Gura_2149 | (PF04055) | ||||
| 351605.Gura_1498 | (PF00078) | ||||
| 351605.Gura_3565 | (PF13426) | ||||
| 351605.Gura_2567 | (PF02223) | ||||
| 351605.Gura_2566 | (PF02223) | ||||
| 351605.Gura_4332 | (PF00025) | ||||
| 351605.Gura_4421 | (PF01739) | ||||
| 351605.Gura_4115 | (PF01610) | ||||
| 351605.Gura_4113 | (PF04326) | ||||
| 351605.Gura_0300 | (PF04055) | ||||
| 351605.Gura_1549 | (PF13426) | ||||
| 351605.Gura_1541 | (PF00665) | ||||
| 351605.Gura_3962 | (PF06250) | ||||
| 351605.Gura_0545 | (PF01058) | ||||
| 351605.Gura_0237 | (PF05168) | ||||
| 351605.Gura_0236 | (PF01909) | ||||
| 351605.Gura_0941 | (PF02915) | ||||
| 351605.Gura_0948 | (PF02954) | ||||
| 351605.Gura_0430 | (PF02915) | ||||
| 351605.Gura_0058 | (PF00665) | ||||
| 351605.Gura_3028 | (PF00665) | ||||
| 351605.Gura_0423 | (PF13426) | ||||
| 351605.Gura_3153 | (PF02223) | ||||
| 351605.Gura_2689 | (PF01739) | ||||
| 351605.Gura_3377 | (PF13426) | ||||
| 351605.Gura_2776 | (PF12838) | ||||
| 351605.Gura_3483 | (PF12838) | ||||
| 351605.Gura_3482 | (PF02310) | ||||
| 351605.Gura_3485 | (PF00549) | ||||
| 351605.Gura_2172 | (PF13426) | ||||
| 351605.Gura_2198 | (PF02754) | ||||
| 351605.Gura_2510 | (PF04055) | ||||
| 351605.Gura_2513 | (PF01880) | ||||
| 351605.Gura_1158 | (PF12256) | ||||
| 351605.Gura_0333 | (PF01058) | ||||
| 351605.Gura_1333 | (PF00078) | ||||
| 351605.Gura_0597 | (PF02661) | ||||
| 351605.Gura_0846 | (PF00078) | ||||
| 351605.Gura_0065 | (PF00665) | ||||
| 351605.Gura_0069 | (PF12762) | ||||
| 351605.Gura_3019 | (PF05990) | ||||
| 351605.Gura_2691 | (PF01739) | ||||
| 351605.Gura_2166 | (PF01739) | ||||
| 351605.Gura_3588 | (PF04055) | ||||
| 351605.Gura_2509 | (PF12762) | ||||
| 351605.Gura_3582 | (PF02754) | ||||
| 351605.Gura_3583 | (PF12838) | ||||
| 351605.Gura_2503 | (PF03144) | ||||
| 351605.Gura_2435 | (PF13237) | ||||
| 351605.Gura_3563 | (PF01966) | ||||
| 351605.Gura_0323 | (PF12838) | ||||
| 351605.Gura_4008 | (PF03144) | ||||
| 351605.Gura_2984 | (PF01739) | ||||
| 351605.Gura_0586 | (PF05168) | ||||
| 351605.Gura_0107 | (PF01610) | ||||
| 351605.Gura_3173 | (PF01909) | ||||
| 351605.Gura_3178 | (PF12762) | ||||
| 351605.Gura_3598 | (PF02661) | ||||
| 351605.Gura_3597 | (PF06250) | ||||
| 351605.Gura_2535 | (PF00665) | ||||
| 351605.Gura_2240 | (PF12838) | ||||
| 351605.Gura_2242 | (PF04055) | ||||
| 351605.Gura_4168 | (PF01739) | ||||
| 351605.Gura_4165 | (PF01909) | ||||
| 351605.Gura_0697 | (PF01610) | ||||
| 351605.Gura_1538 | (PF01610) | ||||
| 351605.Gura_1199 | (PF05168) | ||||
| 351605.Gura_1623 | (PF00665) | ||||
| 351605.Gura_3919 | (PF00078) | ||||
| 351605.Gura_1843 | (PF08357) | ||||
| 351605.Gura_1848 | (PF00665) | ||||
| 351605.Gura_0481 | (PF12838) | ||||
| 351605.Gura_0489 | (PF02310) | ||||
| 351605.Gura_3297 | (PF01966) | ||||
| 351605.Gura_0716 | (PF04055) | ||||
| 351605.Gura_3811 | (PF04055) | ||||
| 351605.Gura_2743 | (PF13426) | ||||
| 351605.Gura_2416 | (PF01012) | ||||
| 351605.Gura_4378 | (PF13426) | ||||
| 351605.Gura_4377 | (PF13426) | ||||
| 351605.Gura_1292 | (PF00078) | ||||
| 351605.Gura_4153 | (PF02915) | ||||
| 351605.Gura_4151 | (PF00078) | ||||
| 351605.Gura_1508 | (PF00078) | ||||
| 351605.Gura_1052 | (PF04055) | ||||
| 351605.Gura_1053 | (PF03144) | ||||
| 351605.Gura_4027 | (PF01966) | ||||
| 351605.Gura_2396 | (PF01610) | ||||
| 351605.Gura_1277 | (PF01909) | ||||
| 351605.Gura_0907 | (PF01966) | ||||
| 351605.Gura_1471 | (PF00078) | ||||
| 351605.Gura_1475 | (PF13540) | ||||
| 351605.Gura_0872 | (PF01058) | ||||
| 351605.Gura_0875 | (PF13426) | ||||
| 351605.Gura_0876 | (PF13426) | ||||
| 351605.Gura_0011 | (PF13426) | ||||
| 351605.Gura_0702 | (PF13431) | ||||
| 351605.Gura_0701 | (PF13431) | ||||
| 351605.Gura_2737 | (PF02661) | ||||
| 351605.Gura_2738 | (PF04326) | ||||
| 351605.Gura_2642 | (PF02223) | ||||
| 351605.Gura_2643 | (PF02223) | ||||
| 351605.Gura_2469 | (PF05168) | ||||
| 351605.Gura_2464 | (PF00665) | ||||
| 351605.Gura_2462 | (PF01610) | ||||
| 351605.Gura_2266 | (PF01610) | ||||
| 351605.Gura_1281 | (PF02661) | ||||
| 351605.Gura_1282 | (PF00158) | ||||
| 351605.Gura_4148 | (PF02661) | ||||
| 351605.Gura_3933 | (PF03144) | ||||
| 351605.Gura_0243 | (PF01966) | ||||
| 351605.Gura_0241 | (PF01909) | ||||
| 351605.Gura_1601 | (PF01012) | ||||
| 351605.Gura_1602 | (PF01012) | ||||
| 351605.Gura_1861 | (PF01909) | ||||
| 351605.Gura_0399 | (PF04055) | ||||
| 351605.Gura_0649 | (PF02754) | ||||
| 351605.Gura_0645 | (PF00078) | ||||
| 351605.Gura_3821 | (PF00665) | ||||
| 351605.Gura_3127 | (PF04055) | ||||
| 351605.Gura_3639 | (PF13237) | ||||
| 351605.Gura_2725 | (PF01966) | ||||
| 351605.Gura_2724 | (PF06250) | not used | |||
| 351605.Gura_3255 | (PF12838) | ||||
| 351605.Gura_2477 | (PF00665) | ||||
| 351605.Gura_2470 | (PF01909) | ||||
| 351605.Gura_2384 | (PF01966) | ||||
| 351605.Gura_2277 | (PF02915) | ||||
| 351605.Gura_1380 | (PF01610) | ||||
| 351605.Gura_0252 | (PF00078) | ||||
| 351605.Gura_1705 | (PF00343) | ||||
| 351605.Gura_1490 | (PF04055) | ||||
| 351605.Gura_0658 | (PF01909) | ||||
| 351605.Gura_0725 | (PF01739) | ||||
| 351605.Gura_3139 | (PF01739) | ||||
| 351605.Gura_2879 | (PF01610) | ||||
| 351605.Gura_2661 | (PF00343) | ||||
| 351605.Gura_2281 | (PF13426) | ||||
| 351605.Gura_2284 | (PF01610) | ||||
| 351605.Gura_1066 | (PF03144) | ||||
| 351605.Gura_1665 | (PF05189) | ||||
| 351605.Gura_1661 | (PF01909) | ||||
| 351605.Gura_0826 | (PF01966) | ||||
| 351605.Gura_0149 | (PF12838) | ||||
| 351605.Gura_1943 | (PF01058) | ||||
| 351605.Gura_1941 | (PF01966) | ||||
| 351605.Gura_2917 | PF04910 | ||||
| 351605.Gura_2708 | (PF00158) | ||||
| 351605.Gura_3477 | (PF00158) | ||||
| 351605.Gura_2051 | (PF00078) | ||||
| 351605.Gura_2054 | (PF05673) | ||||
| 351605.Gura_2454 | (PF01739) | ||||
| 351605.Gura_1017 | (PF04055) | ||||
| 351605.Gura_1011 | (PF06250) | ||||
| 351605.Gura_4193 | (PF00343) | ||||
| 351605.Gura_4284 | (PF04055) | ||||
| 351605.Gura_4285 | (PF04055) | ||||
| 351605.Gura_4267 | (PF01966) | ||||
| 351605.Gura_1123 | (PF01058) | ||||
| 351605.Gura_1726 | (PF05168) | ||||
| 351605.Gura_1725 | (PF01909) | ||||
| 351605.Gura_1232 | (PF00665) | ||||
| 351605.Gura_1342 | (PF02310) | ||||
| 351605.Gura_0551 | (PF00158) | ||||
| 351605.Gura_2903 | (PF13426) | ||||
| 351605.Gura_1211 | (PF01012) | ||||
| 351605.Gura_3647 | (PF00158) | ||||
| 351605.Gura_0344 | (PF13426) | ||||
| 351605.Gura_2842 | (PF02933) | ||||
| 351605.Gura_2026 | (PF02310) | ||||
| 351605.Gura_2118 | (PF13426) | ||||
| 351605.Gura_2111 | (PF13426) | ||||
| 351605.Gura_1003 | (PF04055) | ||||
| 351605.Gura_3888 | (PF00078) | ||||
| 351605.Gura_4270 | (PF01966) | ||||
| 351605.Gura_1133 | (PF01909) | ||||
| 351605.Gura_1644 | (PF05673) | ||||
| 351605.Gura_1223 | (PF00078) | ||||
| 351605.Gura_0354 | (PF01909) | ||||
| 351605.Gura_0999 | (PF02754) | ||||
| 351605.Gura_0179 | (PF02915) | ||||
| 351605.Gura_2853 | (PF13426) | ||||
| 351605.Gura_2854 | (PF04055) | ||||
| 351605.Gura_2856 | (PF12038) | ||||
| 351605.Gura_3181 | (PF01610) | ||||
| 351605.Gura_2586 | (PF04055) | ||||
| 351605.Gura_3217 | (PF00665) | ||||
| 351605.Gura_2612 | (PF01610) | ||||
| 351605.Gura_2031 | (PF03083) | ||||
| 351605.Gura_2326 | (PF01610) | ||||
| 351605.Gura_1032 | (PF03144) | ||||
| 351605.Gura_4243 | (PF01058) | ||||
| 351605.Gura_1109 | (PF12762) | ||||
| 351605.Gura_1105 | (PF00665) | ||||
| 351605.Gura_0183 | (PF00078) | ||||
| 351605.Gura_1583 | (PF05673) | ||||
| 351605.Gura_1581 | (PF04055) | ||||
| 351605.Gura_1212 | (PF01012) | ||||
| 351605.Gura_3854 | (PF00343) | ||||
| 351605.Gura_1747 | (PF04383) | ||||
| 351605.Gura_0619 | (PF13426) | ||||
| 351605.Gura_1748 | (PF01909) | ||||
| 351605.Gura_1966 | (PF05706) | ||||
| 351605.Gura_0164 | (PF03144) | ||||
| 351605.Gura_2929 | (PF01966) | ||||
| 351605.Gura_2922 | (PF04326) | ||||
| 351605.Gura_2924 | (PF00078) | ||||
| 351605.Gura_3069 | (PF02661) | ||||
| 351605.Gura_3067 | (PF02661) | ||||
| 351605.Gura_3662 | (PF04326) |
Detailed merged results for each protein sequence
- Detailed merged results as table (merge_results.html)
- Detailed merged results as tab delimited file (merge_results.csv)
Individual results for each protein sequence
- EffectiveELD predictions (PROTEINS.ELD.TXT)
- Predotar predictions using animal/human model (Predotar_output_modelANIMAL.TXT)
- Predotar predictions using plant model (Predotar_output_modelPLANT.TXT)
Genome based results
Summary
- Gram negative: YES (FDR = 0.5 %)
- Functional Type III secretion system: NO (FDR = 12.5 %)
- Functional Type IV secretion system: NO (FDR = 7.2 %)
- Functional Type VI secretion system: YES (FDR = 7.7 %)
Estimated copy number = 0.25 (2/8 KEGG proteins)
Individual results for each secretion system
- List of 100 most important COGs/NOGs for prediction of functional Type III secretion system (T3_top100_COGS.xls)
- List of 100 most important COGs/NOGs for prediction of functional Type IV secretion system (T4_top100_COGS.xls)
- List of 100 most important COGs/NOGs for prediction of functional Type VI secretion system (T6_top100_COGS.xls)
- List of COGs assigned to Type III secretion system in KEGG (T3SS_KEGG_cmp.xls)
- List of COGs assigned to Type IV secretion system in KEGG (T4SS_KEGG_cmp.xls)
- List of COGs assigned to Type VI secretion system in KEGG (T6SS_KEGG_cmp.xls)
Parameters:
==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================
Estimated copy number = 0.25 (2/8 KEGG proteins)
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Contact
- +43 1 4277 76681
- +43 1 4277 876681
- contact.cube@univie.ac.at
