Effective results for Mycobacterium gilvum PYR-GCK (eggnog40)

Summary

Number of putative secreted proteins: 327
- Predicted by T4SEpre: 0
- Predicted by EffectiveELD: 41 eukaryotic-like domains, contained in 327 proteins (3 high, 324 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): None

Protein based results

Putative secreted proteins (weak evidence indicated by parentheses)

ProteinEffectiveT3EffectiveCCBDT4SEpreEffectiveELDPredotar
350054.Mflv_4703(PF06974) (PF03007)(mitochondrial); (plastid)
350054.Mflv_2109(PF03007) (PF06974)(mitochondrial)
350054.Mflv_0603(PF00665) (PF13276)mitochondrial
350054.Mflv_4940(PF07224)mitochondrial
350054.Mflv_4709(PF00355)mitochondrial; (mitochondrial)
350054.Mflv_4125(PF02727) (PF02728) (PF01179)
350054.Mflv_3282(PF01113)(mitochondrial)
350054.Mflv_1621(PF00890)ER
350054.Mflv_0711(PF02470)(ER)
350054.Mflv_0710(PF02470)ER
350054.Mflv_0648(PF02470)ER
350054.Mflv_2508(PF02470)ER
350054.Mflv_2509(PF02470)ER
350054.Mflv_0652(PF02470)ER
350054.Mflv_0653(PF02405)mitochondrial; (mitochondrial)
350054.Mflv_0650(PF02470)ER; (ER)
350054.Mflv_0651(PF02470)ER
350054.Mflv_0011(PF02405)mitochondrial; (mitochondrial)
350054.Mflv_2513(PF02470)ER
350054.Mflv_2512(PF02470)ER
350054.Mflv_2511(PF02470)ER
350054.Mflv_2510(PF02470)ER
350054.Mflv_0649(PF02470)ER
350054.Mflv_0647(PF02470)ER
350054.Mflv_2868(PF03596)ER
350054.Mflv_1990(PF09995)(mitochondrial)
350054.Mflv_0007(PF02470)ER
350054.Mflv_0006(PF02470)ER; mitochondrial
350054.Mflv_0005(PF02470)(mitochondrial); (plastid)
350054.Mflv_0009(PF02470)ER
350054.Mflv_0008(PF02470)(ER)
350054.Mflv_4967(PF01083)ER
350054.Mflv_1167(PF01083)ER
350054.Mflv_3552(PF01083)ER; (ER)
350054.Mflv_3126(PF02727) (PF02728) (PF01179)
350054.Mflv_1158(PF01744)ER
350054.Mflv_1561(PF02470)ER
350054.Mflv_1560(PF02470)ER
350054.Mflv_4093(PF13622)(ER)
350054.Mflv_3373(PF01083)ER
350054.Mflv_1558(PF02470)(ER)
350054.Mflv_1559(PF02470)ER
350054.Mflv_1556(PF02470)(ER)
350054.Mflv_1557(PF02470)ER
350054.Mflv_1555(PF02405)mitochondrial; (mitochondrial)
350054.Mflv_4333(PF00355)ER
350054.Mflv_4533(PF02470)ER
350054.Mflv_4537(PF02470)(ER)
350054.Mflv_4536(PF02470)ER
350054.Mflv_4535(PF02470)ER
350054.Mflv_4534(PF02470)ER
350054.Mflv_4539(PF02405)mitochondrial; (mitochondrial)
350054.Mflv_4538(PF02470)ER
350054.Mflv_2960(PF04450)(mitochondrial)
350054.Mflv_1546(PF00355)(mitochondrial)
350054.Mflv_3177(PF01083)ER
350054.Mflv_3051(PF06742)ER
350054.Mflv_4432(PF01083)(mitochondrial)
350054.Mflv_4439(PF01083)(ER)
350054.Mflv_1058(PF06974) (PF03007)(ER)
350054.Mflv_3180(PF03596)ER
350054.Mflv_2007(PF14494)(mitochondrial)
350054.Mflv_1104(PF00067)mitochondrial
350054.Mflv_4160(PF02470)ER
350054.Mflv_4161(PF02470)ER
350054.Mflv_4162(PF02470)ER
350054.Mflv_4163(PF02470)ER
350054.Mflv_4164(PF02470)ER
350054.Mflv_4165(PF02470)ER
350054.Mflv_2104(PF02470)ER
350054.Mflv_2105(PF02470)ER
350054.Mflv_2106(PF02470)ER
350054.Mflv_2100(PF02405)mitochondrial
350054.Mflv_2101(PF02470)ER
350054.Mflv_2102(PF02470)ER; (ER)
350054.Mflv_1527(PF00067)(mitochondrial); plastid
350054.Mflv_0610(PF03596)ER
350054.Mflv_4965(PF01083)(ER)
350054.Mflv_0604(PF00665)mitochondrial
350054.Mflv_0288(PF00067)mitochondrial
350054.Mflv_0708(PF02470)(mitochondrial); mitochondrial
350054.Mflv_0709(PF02470)ER
350054.Mflv_0706(PF02470)ER
350054.Mflv_0707(PF02470)ER
350054.Mflv_0384(PF00665)(plastid)
350054.Mflv_0665(PF00665) (PF13276)
350054.Mflv_0662(PF00355) (PF00848)
350054.Mflv_3867(PF13738)(mitochondrial)
350054.Mflv_1824(PF01113)mitochondrial
350054.Mflv_3700(PF00665) (PF13276)
350054.Mflv_0349(PF06974) (PF03007)
350054.Mflv_2099(PF02405)(mitochondrial)
350054.Mflv_2470(PF00355) (PF00848)
350054.Mflv_2506(PF02405)(plastid)
350054.Mflv_2507(PF02405)(mitochondrial)
350054.Mflv_0658(PF00355) (PF00848)
350054.Mflv_2464(PF00355) (PF00848)
350054.Mflv_0640(PF00355) (PF00848)
350054.Mflv_1742(PF00665)(plastid)
350054.Mflv_3082(PF00355) (PF00848)
350054.Mflv_1355(PF00355) (PF00848)
350054.Mflv_2328(PF00355) (PF00848)
350054.Mflv_2541(PF03007) (PF06974)
350054.Mflv_1764(PF00067)(ER)
350054.Mflv_0595(PF00355) (PF00848)
350054.Mflv_0599(PF00665) (PF13276)
350054.Mflv_0685(PF00355) (PF00848)
350054.Mflv_0563(PF00355) (PF00848)
350054.Mflv_0567(PF00355) (PF00848)
350054.Mflv_4078(PF00665)(plastid)
350054.Mflv_4091(PF06974) (PF03007)
350054.Mflv_3376(PF00067)(plastid)
350054.Mflv_1788(PF00355) (PF00848)
350054.Mflv_0576(PF00665) (PF13276)
350054.Mflv_0574(PF00665) (PF13276)
350054.Mflv_2788(PF00665) (PF13276)
350054.Mflv_2563(PF03007) (PF06974)
350054.Mflv_3211(PF03596)(plastid)
350054.Mflv_0544(PF00355) (PF00848)
350054.Mflv_3688(PF00665) (PF13276)
350054.Mflv_3221(PF00665) (PF13276)
350054.Mflv_0439(PF03007) (PF06974)
350054.Mflv_0550(PF00355) (PF00848)
350054.Mflv_0559(PF00665) (PF13276)
350054.Mflv_0558(PF00355) (PF00848)
350054.Mflv_5212(PF03007) (PF06974)
350054.Mflv_1843(PF00355)(mitochondrial)
350054.Mflv_4642(PF00665) (PF13276)
350054.Mflv_4646(PF00665) (PF13276)
350054.Mflv_0632(PF00355) (PF00848)
350054.Mflv_2004(PF03007) (PF06974)
350054.Mflv_4633(PF00665) (PF13276)
350054.Mflv_0537(PF00355) (PF00848)
350054.Mflv_0620(PF00665) (PF13276)
350054.Mflv_0626(PF00355) (PF00848)
350054.Mflv_0848(PF08608)(ER)
350054.Mflv_4620(PF00665) (PF13276)
350054.Mflv_2439(PF00355) (PF00848)
350054.Mflv_4966(PF01083)plastid
350054.Mflv_2428(PF06974) (PF03007)
350054.Mflv_4540(PF02405)(mitochondrial)
350054.Mflv_0608(PF00665) (PF13276)
350054.Mflv_4608(PF13738)(ER)
350054.Mflv_4604(PF00067)(mitochondrial)
350054.Mflv_4977(PF03007) (PF06974)
350054.Mflv_4103(PF13738)(ER)
350054.Mflv_4801(PF00067)
350054.Mflv_0076(PF13622)
350054.Mflv_0073PF08213not used
350054.Mflv_0070(PF13452)
350054.Mflv_2517(PF00067)
350054.Mflv_4499(PF13738)
350054.Mflv_1259(PF00067)
350054.Mflv_0382(PF00665)
350054.Mflv_1257(PF00067)
350054.Mflv_2403(PF00890)
350054.Mflv_4013(PF01113)
350054.Mflv_1037(PF01083)
350054.Mflv_0669(PF00890)
350054.Mflv_5053(PF00067)
350054.Mflv_5052(PF00067)
350054.Mflv_2398(PF00890)
350054.Mflv_0713(PF02405)
350054.Mflv_0712(PF02405)
350054.Mflv_1531(PF13469)
350054.Mflv_1533(PF00355)
350054.Mflv_0060(PF09995)
350054.Mflv_0394(PF00890)
350054.Mflv_2478(PF13459)
350054.Mflv_2479(PF00067)
350054.Mflv_2474(PF00067)
350054.Mflv_2477(PF00067)
350054.Mflv_0481(PF00665)
350054.Mflv_3290(PF00067)
350054.Mflv_0654(PF02405)
350054.Mflv_2877(PF00665)
350054.Mflv_1831(PF13469)
350054.Mflv_2640(PF00067)
350054.Mflv_4823(PF13772)
350054.Mflv_0010(PF02470)
350054.Mflv_0012(PF02405)
350054.Mflv_0126(PF13738)
350054.Mflv_4107(PF00067)
350054.Mflv_5273(PF09995)
350054.Mflv_5189(PF02732)
350054.Mflv_1607(PF00067)
350054.Mflv_5074(PF01083)
350054.Mflv_3590(PF13622)
350054.Mflv_1519(PF00890)
350054.Mflv_1511(PF13452)
350054.Mflv_1518(PF13452)
350054.Mflv_3618(PF00890)
350054.Mflv_2456PF05241
350054.Mflv_4592(PF00067)
350054.Mflv_4597(PF08608)
350054.Mflv_0225(PF00067)
350054.Mflv_4204(PF13276)
350054.Mflv_4115(PF13469)
350054.Mflv_4114(PF06742)
350054.Mflv_4110(PF13622)
350054.Mflv_1995(PF09995)
350054.Mflv_0743(PF04072)
350054.Mflv_1508(PF00067)
350054.Mflv_0690(PF00665)
350054.Mflv_4846(PF00890)
350054.Mflv_2532(PF08354)
350054.Mflv_0363(PF00067)
350054.Mflv_1767(PF01113)
350054.Mflv_1766(PF01113)
350054.Mflv_1763(PF00067)
350054.Mflv_1762PF04622
350054.Mflv_1768(PF00067)
350054.Mflv_5259(PF04072)
350054.Mflv_0732(PF00355)
350054.Mflv_0591(PF13459)
350054.Mflv_0681(PF13459)
350054.Mflv_3480(PF13469)
350054.Mflv_1820(PF13772)
350054.Mflv_3307(PF00067)
350054.Mflv_4315(PF00067)
350054.Mflv_1152(PF00355)
350054.Mflv_3831(PF13622)
350054.Mflv_0947(PF09995)
350054.Mflv_3157(PF00890)
350054.Mflv_0168(PF04072)
350054.Mflv_3790(PF13622)
350054.Mflv_4074(PF13469)
350054.Mflv_3375(PF04072)
350054.Mflv_3372(PF13738)
350054.Mflv_4325(PF00067)
350054.Mflv_5121(PF13452)
350054.Mflv_0571(PF00890)
350054.Mflv_2954(PF00355)
350054.Mflv_1552(PF13459)
350054.Mflv_1554(PF02405)
350054.Mflv_0790(PF13622)
350054.Mflv_4895(PF13452)
350054.Mflv_3143(PF13622)
350054.Mflv_3784(PF14494)
350054.Mflv_2498(PF00067)
350054.Mflv_2499(PF13459)
350054.Mflv_2496(PF06742)
350054.Mflv_2494(PF13469)
350054.Mflv_2764(PF03492)
350054.Mflv_1229(PF00067)
350054.Mflv_4401(PF13469)
350054.Mflv_4400(PF06742)
350054.Mflv_4339(PF00067)
350054.Mflv_4332(PF13738)
350054.Mflv_5110(PF09995)
350054.Mflv_5119(PF13452)
350054.Mflv_3687(PF06742)
350054.Mflv_1547(PF00890)
350054.Mflv_1541(PF00067)
350054.Mflv_3563(PF13622)
350054.Mflv_2484(PF13459)
350054.Mflv_2488(PF00355)
350054.Mflv_3195(PF00665)
350054.Mflv_4344(PF13622)
350054.Mflv_4343(PF00067)
350054.Mflv_4506(PF13738)
350054.Mflv_3222(PF00665)
350054.Mflv_1123(PF13738)
350054.Mflv_0552(PF13452)
350054.Mflv_0882(PF00665)
350054.Mflv_3997(PF04072)
350054.Mflv_1596(PF00067)
350054.Mflv_1595(PF13459)
350054.Mflv_1598(PF00067)
350054.Mflv_0330(PF09995)
350054.Mflv_4607(PF13738)
350054.Mflv_3183(PF00665)
350054.Mflv_2229(PF00067)
350054.Mflv_3188(PF13276)
350054.Mflv_4428(PF14249)
350054.Mflv_0423(PF09995)
350054.Mflv_0425(PF00067)
350054.Mflv_2907(PF13622)
350054.Mflv_0634(PF13452)
350054.Mflv_1587(PF00067)
350054.Mflv_1854(PF00067)
350054.Mflv_1321(PF00067)
350054.Mflv_2753(PF00355)
350054.Mflv_2754(PF01113)
350054.Mflv_0184(PF13738)
350054.Mflv_4564(PF00890)
350054.Mflv_4566(PF00355)
350054.Mflv_4567(PF00890)
350054.Mflv_5016(PF00067)
350054.Mflv_0994(PF13452)
350054.Mflv_3536(PF09995)
350054.Mflv_2103(PF02470)
350054.Mflv_1266(PF00067)
350054.Mflv_2431(PF00067)
350054.Mflv_3258(PF07958)
350054.Mflv_3257(PF12471)
350054.Mflv_3252(PF09995)
350054.Mflv_4282(PF00067)
350054.Mflv_4287(PF13738)
350054.Mflv_5024(PF04072)
350054.Mflv_5025(PF04072)
350054.Mflv_5023(PF04072)
350054.Mflv_5152(PF02689)
350054.Mflv_0613(PF00665)
350054.Mflv_1908(PF00067)
350054.Mflv_1670(PF09995)
350054.Mflv_4752(PF13276)
350054.Mflv_3411(PF00890)
350054.Mflv_0056(PF00067)
350054.Mflv_1277(PF01113)
350054.Mflv_4763(PF13276)
350054.Mflv_4145(PF00067)
350054.Mflv_4143(PF13622)
350054.Mflv_4149(PF00067)
350054.Mflv_3063(PF13622)
350054.Mflv_4383(PF06742)
350054.Mflv_4385(PF13469)
350054.Mflv_4605(PF13738)
350054.Mflv_3385(PF04072)
350054.Mflv_2418(PF00067)
350054.Mflv_4150(PF00067)
350054.Mflv_4557(PF13738)
350054.Mflv_4550(PF00890)
350054.Mflv_1022(PF13622)
350054.Mflv_1027(PF03959)
350054.Mflv_2136(PF04072)
350054.Mflv_3475(PF00067)

Detailed merged results for each protein sequence

Individual results for each protein sequence

Genome based results

Summary

  • Gram negative: NO (FDR = 0.5 %)
  • Functional Type III secretion system: N.D.
  • Functional Type IV secretion system: NO (FDR = 7.2 %)
  • Functional Type VI secretion system: N.D.

Individual results for each secretion system

Parameters:

==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================