Effective results for Mycobacterium gilvum PYR-GCK (eggnog40)
Summary
Number of putative secreted proteins: 327
- Predicted by T4SEpre: 0
- Predicted by EffectiveELD: 41 eukaryotic-like domains, contained in 327 proteins (3 high, 324 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): None
Protein based results
Putative secreted proteins (weak evidence indicated by parentheses)
| Protein | EffectiveT3 | EffectiveCCBD | T4SEpre | EffectiveELD | Predotar |
|---|---|---|---|---|---|
| 350054.Mflv_4703 | (PF06974) (PF03007) | (mitochondrial); (plastid) | |||
| 350054.Mflv_2109 | (PF03007) (PF06974) | (mitochondrial) | |||
| 350054.Mflv_0603 | (PF00665) (PF13276) | mitochondrial | |||
| 350054.Mflv_4940 | (PF07224) | mitochondrial | |||
| 350054.Mflv_4709 | (PF00355) | mitochondrial; (mitochondrial) | |||
| 350054.Mflv_4125 | (PF02727) (PF02728) (PF01179) | ||||
| 350054.Mflv_3282 | (PF01113) | (mitochondrial) | |||
| 350054.Mflv_1621 | (PF00890) | ER | |||
| 350054.Mflv_0711 | (PF02470) | (ER) | |||
| 350054.Mflv_0710 | (PF02470) | ER | |||
| 350054.Mflv_0648 | (PF02470) | ER | |||
| 350054.Mflv_2508 | (PF02470) | ER | |||
| 350054.Mflv_2509 | (PF02470) | ER | |||
| 350054.Mflv_0652 | (PF02470) | ER | |||
| 350054.Mflv_0653 | (PF02405) | mitochondrial; (mitochondrial) | |||
| 350054.Mflv_0650 | (PF02470) | ER; (ER) | |||
| 350054.Mflv_0651 | (PF02470) | ER | |||
| 350054.Mflv_0011 | (PF02405) | mitochondrial; (mitochondrial) | |||
| 350054.Mflv_2513 | (PF02470) | ER | |||
| 350054.Mflv_2512 | (PF02470) | ER | |||
| 350054.Mflv_2511 | (PF02470) | ER | |||
| 350054.Mflv_2510 | (PF02470) | ER | |||
| 350054.Mflv_0649 | (PF02470) | ER | |||
| 350054.Mflv_0647 | (PF02470) | ER | |||
| 350054.Mflv_2868 | (PF03596) | ER | |||
| 350054.Mflv_1990 | (PF09995) | (mitochondrial) | |||
| 350054.Mflv_0007 | (PF02470) | ER | |||
| 350054.Mflv_0006 | (PF02470) | ER; mitochondrial | |||
| 350054.Mflv_0005 | (PF02470) | (mitochondrial); (plastid) | |||
| 350054.Mflv_0009 | (PF02470) | ER | |||
| 350054.Mflv_0008 | (PF02470) | (ER) | |||
| 350054.Mflv_4967 | (PF01083) | ER | |||
| 350054.Mflv_1167 | (PF01083) | ER | |||
| 350054.Mflv_3552 | (PF01083) | ER; (ER) | |||
| 350054.Mflv_3126 | (PF02727) (PF02728) (PF01179) | ||||
| 350054.Mflv_1158 | (PF01744) | ER | |||
| 350054.Mflv_1561 | (PF02470) | ER | |||
| 350054.Mflv_1560 | (PF02470) | ER | |||
| 350054.Mflv_4093 | (PF13622) | (ER) | |||
| 350054.Mflv_3373 | (PF01083) | ER | |||
| 350054.Mflv_1558 | (PF02470) | (ER) | |||
| 350054.Mflv_1559 | (PF02470) | ER | |||
| 350054.Mflv_1556 | (PF02470) | (ER) | |||
| 350054.Mflv_1557 | (PF02470) | ER | |||
| 350054.Mflv_1555 | (PF02405) | mitochondrial; (mitochondrial) | |||
| 350054.Mflv_4333 | (PF00355) | ER | |||
| 350054.Mflv_4533 | (PF02470) | ER | |||
| 350054.Mflv_4537 | (PF02470) | (ER) | |||
| 350054.Mflv_4536 | (PF02470) | ER | |||
| 350054.Mflv_4535 | (PF02470) | ER | |||
| 350054.Mflv_4534 | (PF02470) | ER | |||
| 350054.Mflv_4539 | (PF02405) | mitochondrial; (mitochondrial) | |||
| 350054.Mflv_4538 | (PF02470) | ER | |||
| 350054.Mflv_2960 | (PF04450) | (mitochondrial) | |||
| 350054.Mflv_1546 | (PF00355) | (mitochondrial) | |||
| 350054.Mflv_3177 | (PF01083) | ER | |||
| 350054.Mflv_3051 | (PF06742) | ER | |||
| 350054.Mflv_4432 | (PF01083) | (mitochondrial) | |||
| 350054.Mflv_4439 | (PF01083) | (ER) | |||
| 350054.Mflv_1058 | (PF06974) (PF03007) | (ER) | |||
| 350054.Mflv_3180 | (PF03596) | ER | |||
| 350054.Mflv_2007 | (PF14494) | (mitochondrial) | |||
| 350054.Mflv_1104 | (PF00067) | mitochondrial | |||
| 350054.Mflv_4160 | (PF02470) | ER | |||
| 350054.Mflv_4161 | (PF02470) | ER | |||
| 350054.Mflv_4162 | (PF02470) | ER | |||
| 350054.Mflv_4163 | (PF02470) | ER | |||
| 350054.Mflv_4164 | (PF02470) | ER | |||
| 350054.Mflv_4165 | (PF02470) | ER | |||
| 350054.Mflv_2104 | (PF02470) | ER | |||
| 350054.Mflv_2105 | (PF02470) | ER | |||
| 350054.Mflv_2106 | (PF02470) | ER | |||
| 350054.Mflv_2100 | (PF02405) | mitochondrial | |||
| 350054.Mflv_2101 | (PF02470) | ER | |||
| 350054.Mflv_2102 | (PF02470) | ER; (ER) | |||
| 350054.Mflv_1527 | (PF00067) | (mitochondrial); plastid | |||
| 350054.Mflv_0610 | (PF03596) | ER | |||
| 350054.Mflv_4965 | (PF01083) | (ER) | |||
| 350054.Mflv_0604 | (PF00665) | mitochondrial | |||
| 350054.Mflv_0288 | (PF00067) | mitochondrial | |||
| 350054.Mflv_0708 | (PF02470) | (mitochondrial); mitochondrial | |||
| 350054.Mflv_0709 | (PF02470) | ER | |||
| 350054.Mflv_0706 | (PF02470) | ER | |||
| 350054.Mflv_0707 | (PF02470) | ER | |||
| 350054.Mflv_0384 | (PF00665) | (plastid) | |||
| 350054.Mflv_0665 | (PF00665) (PF13276) | ||||
| 350054.Mflv_0662 | (PF00355) (PF00848) | ||||
| 350054.Mflv_3867 | (PF13738) | (mitochondrial) | |||
| 350054.Mflv_1824 | (PF01113) | mitochondrial | |||
| 350054.Mflv_3700 | (PF00665) (PF13276) | ||||
| 350054.Mflv_0349 | (PF06974) (PF03007) | ||||
| 350054.Mflv_2099 | (PF02405) | (mitochondrial) | |||
| 350054.Mflv_2470 | (PF00355) (PF00848) | ||||
| 350054.Mflv_2506 | (PF02405) | (plastid) | |||
| 350054.Mflv_2507 | (PF02405) | (mitochondrial) | |||
| 350054.Mflv_0658 | (PF00355) (PF00848) | ||||
| 350054.Mflv_2464 | (PF00355) (PF00848) | ||||
| 350054.Mflv_0640 | (PF00355) (PF00848) | ||||
| 350054.Mflv_1742 | (PF00665) | (plastid) | |||
| 350054.Mflv_3082 | (PF00355) (PF00848) | ||||
| 350054.Mflv_1355 | (PF00355) (PF00848) | ||||
| 350054.Mflv_2328 | (PF00355) (PF00848) | ||||
| 350054.Mflv_2541 | (PF03007) (PF06974) | ||||
| 350054.Mflv_1764 | (PF00067) | (ER) | |||
| 350054.Mflv_0595 | (PF00355) (PF00848) | ||||
| 350054.Mflv_0599 | (PF00665) (PF13276) | ||||
| 350054.Mflv_0685 | (PF00355) (PF00848) | ||||
| 350054.Mflv_0563 | (PF00355) (PF00848) | ||||
| 350054.Mflv_0567 | (PF00355) (PF00848) | ||||
| 350054.Mflv_4078 | (PF00665) | (plastid) | |||
| 350054.Mflv_4091 | (PF06974) (PF03007) | ||||
| 350054.Mflv_3376 | (PF00067) | (plastid) | |||
| 350054.Mflv_1788 | (PF00355) (PF00848) | ||||
| 350054.Mflv_0576 | (PF00665) (PF13276) | ||||
| 350054.Mflv_0574 | (PF00665) (PF13276) | ||||
| 350054.Mflv_2788 | (PF00665) (PF13276) | ||||
| 350054.Mflv_2563 | (PF03007) (PF06974) | ||||
| 350054.Mflv_3211 | (PF03596) | (plastid) | |||
| 350054.Mflv_0544 | (PF00355) (PF00848) | ||||
| 350054.Mflv_3688 | (PF00665) (PF13276) | ||||
| 350054.Mflv_3221 | (PF00665) (PF13276) | ||||
| 350054.Mflv_0439 | (PF03007) (PF06974) | ||||
| 350054.Mflv_0550 | (PF00355) (PF00848) | ||||
| 350054.Mflv_0559 | (PF00665) (PF13276) | ||||
| 350054.Mflv_0558 | (PF00355) (PF00848) | ||||
| 350054.Mflv_5212 | (PF03007) (PF06974) | ||||
| 350054.Mflv_1843 | (PF00355) | (mitochondrial) | |||
| 350054.Mflv_4642 | (PF00665) (PF13276) | ||||
| 350054.Mflv_4646 | (PF00665) (PF13276) | ||||
| 350054.Mflv_0632 | (PF00355) (PF00848) | ||||
| 350054.Mflv_2004 | (PF03007) (PF06974) | ||||
| 350054.Mflv_4633 | (PF00665) (PF13276) | ||||
| 350054.Mflv_0537 | (PF00355) (PF00848) | ||||
| 350054.Mflv_0620 | (PF00665) (PF13276) | ||||
| 350054.Mflv_0626 | (PF00355) (PF00848) | ||||
| 350054.Mflv_0848 | (PF08608) | (ER) | |||
| 350054.Mflv_4620 | (PF00665) (PF13276) | ||||
| 350054.Mflv_2439 | (PF00355) (PF00848) | ||||
| 350054.Mflv_4966 | (PF01083) | plastid | |||
| 350054.Mflv_2428 | (PF06974) (PF03007) | ||||
| 350054.Mflv_4540 | (PF02405) | (mitochondrial) | |||
| 350054.Mflv_0608 | (PF00665) (PF13276) | ||||
| 350054.Mflv_4608 | (PF13738) | (ER) | |||
| 350054.Mflv_4604 | (PF00067) | (mitochondrial) | |||
| 350054.Mflv_4977 | (PF03007) (PF06974) | ||||
| 350054.Mflv_4103 | (PF13738) | (ER) | |||
| 350054.Mflv_4801 | (PF00067) | ||||
| 350054.Mflv_0076 | (PF13622) | ||||
| 350054.Mflv_0073 | PF08213 | not used | |||
| 350054.Mflv_0070 | (PF13452) | ||||
| 350054.Mflv_2517 | (PF00067) | ||||
| 350054.Mflv_4499 | (PF13738) | ||||
| 350054.Mflv_1259 | (PF00067) | ||||
| 350054.Mflv_0382 | (PF00665) | ||||
| 350054.Mflv_1257 | (PF00067) | ||||
| 350054.Mflv_2403 | (PF00890) | ||||
| 350054.Mflv_4013 | (PF01113) | ||||
| 350054.Mflv_1037 | (PF01083) | ||||
| 350054.Mflv_0669 | (PF00890) | ||||
| 350054.Mflv_5053 | (PF00067) | ||||
| 350054.Mflv_5052 | (PF00067) | ||||
| 350054.Mflv_2398 | (PF00890) | ||||
| 350054.Mflv_0713 | (PF02405) | ||||
| 350054.Mflv_0712 | (PF02405) | ||||
| 350054.Mflv_1531 | (PF13469) | ||||
| 350054.Mflv_1533 | (PF00355) | ||||
| 350054.Mflv_0060 | (PF09995) | ||||
| 350054.Mflv_0394 | (PF00890) | ||||
| 350054.Mflv_2478 | (PF13459) | ||||
| 350054.Mflv_2479 | (PF00067) | ||||
| 350054.Mflv_2474 | (PF00067) | ||||
| 350054.Mflv_2477 | (PF00067) | ||||
| 350054.Mflv_0481 | (PF00665) | ||||
| 350054.Mflv_3290 | (PF00067) | ||||
| 350054.Mflv_0654 | (PF02405) | ||||
| 350054.Mflv_2877 | (PF00665) | ||||
| 350054.Mflv_1831 | (PF13469) | ||||
| 350054.Mflv_2640 | (PF00067) | ||||
| 350054.Mflv_4823 | (PF13772) | ||||
| 350054.Mflv_0010 | (PF02470) | ||||
| 350054.Mflv_0012 | (PF02405) | ||||
| 350054.Mflv_0126 | (PF13738) | ||||
| 350054.Mflv_4107 | (PF00067) | ||||
| 350054.Mflv_5273 | (PF09995) | ||||
| 350054.Mflv_5189 | (PF02732) | ||||
| 350054.Mflv_1607 | (PF00067) | ||||
| 350054.Mflv_5074 | (PF01083) | ||||
| 350054.Mflv_3590 | (PF13622) | ||||
| 350054.Mflv_1519 | (PF00890) | ||||
| 350054.Mflv_1511 | (PF13452) | ||||
| 350054.Mflv_1518 | (PF13452) | ||||
| 350054.Mflv_3618 | (PF00890) | ||||
| 350054.Mflv_2456 | PF05241 | ||||
| 350054.Mflv_4592 | (PF00067) | ||||
| 350054.Mflv_4597 | (PF08608) | ||||
| 350054.Mflv_0225 | (PF00067) | ||||
| 350054.Mflv_4204 | (PF13276) | ||||
| 350054.Mflv_4115 | (PF13469) | ||||
| 350054.Mflv_4114 | (PF06742) | ||||
| 350054.Mflv_4110 | (PF13622) | ||||
| 350054.Mflv_1995 | (PF09995) | ||||
| 350054.Mflv_0743 | (PF04072) | ||||
| 350054.Mflv_1508 | (PF00067) | ||||
| 350054.Mflv_0690 | (PF00665) | ||||
| 350054.Mflv_4846 | (PF00890) | ||||
| 350054.Mflv_2532 | (PF08354) | ||||
| 350054.Mflv_0363 | (PF00067) | ||||
| 350054.Mflv_1767 | (PF01113) | ||||
| 350054.Mflv_1766 | (PF01113) | ||||
| 350054.Mflv_1763 | (PF00067) | ||||
| 350054.Mflv_1762 | PF04622 | ||||
| 350054.Mflv_1768 | (PF00067) | ||||
| 350054.Mflv_5259 | (PF04072) | ||||
| 350054.Mflv_0732 | (PF00355) | ||||
| 350054.Mflv_0591 | (PF13459) | ||||
| 350054.Mflv_0681 | (PF13459) | ||||
| 350054.Mflv_3480 | (PF13469) | ||||
| 350054.Mflv_1820 | (PF13772) | ||||
| 350054.Mflv_3307 | (PF00067) | ||||
| 350054.Mflv_4315 | (PF00067) | ||||
| 350054.Mflv_1152 | (PF00355) | ||||
| 350054.Mflv_3831 | (PF13622) | ||||
| 350054.Mflv_0947 | (PF09995) | ||||
| 350054.Mflv_3157 | (PF00890) | ||||
| 350054.Mflv_0168 | (PF04072) | ||||
| 350054.Mflv_3790 | (PF13622) | ||||
| 350054.Mflv_4074 | (PF13469) | ||||
| 350054.Mflv_3375 | (PF04072) | ||||
| 350054.Mflv_3372 | (PF13738) | ||||
| 350054.Mflv_4325 | (PF00067) | ||||
| 350054.Mflv_5121 | (PF13452) | ||||
| 350054.Mflv_0571 | (PF00890) | ||||
| 350054.Mflv_2954 | (PF00355) | ||||
| 350054.Mflv_1552 | (PF13459) | ||||
| 350054.Mflv_1554 | (PF02405) | ||||
| 350054.Mflv_0790 | (PF13622) | ||||
| 350054.Mflv_4895 | (PF13452) | ||||
| 350054.Mflv_3143 | (PF13622) | ||||
| 350054.Mflv_3784 | (PF14494) | ||||
| 350054.Mflv_2498 | (PF00067) | ||||
| 350054.Mflv_2499 | (PF13459) | ||||
| 350054.Mflv_2496 | (PF06742) | ||||
| 350054.Mflv_2494 | (PF13469) | ||||
| 350054.Mflv_2764 | (PF03492) | ||||
| 350054.Mflv_1229 | (PF00067) | ||||
| 350054.Mflv_4401 | (PF13469) | ||||
| 350054.Mflv_4400 | (PF06742) | ||||
| 350054.Mflv_4339 | (PF00067) | ||||
| 350054.Mflv_4332 | (PF13738) | ||||
| 350054.Mflv_5110 | (PF09995) | ||||
| 350054.Mflv_5119 | (PF13452) | ||||
| 350054.Mflv_3687 | (PF06742) | ||||
| 350054.Mflv_1547 | (PF00890) | ||||
| 350054.Mflv_1541 | (PF00067) | ||||
| 350054.Mflv_3563 | (PF13622) | ||||
| 350054.Mflv_2484 | (PF13459) | ||||
| 350054.Mflv_2488 | (PF00355) | ||||
| 350054.Mflv_3195 | (PF00665) | ||||
| 350054.Mflv_4344 | (PF13622) | ||||
| 350054.Mflv_4343 | (PF00067) | ||||
| 350054.Mflv_4506 | (PF13738) | ||||
| 350054.Mflv_3222 | (PF00665) | ||||
| 350054.Mflv_1123 | (PF13738) | ||||
| 350054.Mflv_0552 | (PF13452) | ||||
| 350054.Mflv_0882 | (PF00665) | ||||
| 350054.Mflv_3997 | (PF04072) | ||||
| 350054.Mflv_1596 | (PF00067) | ||||
| 350054.Mflv_1595 | (PF13459) | ||||
| 350054.Mflv_1598 | (PF00067) | ||||
| 350054.Mflv_0330 | (PF09995) | ||||
| 350054.Mflv_4607 | (PF13738) | ||||
| 350054.Mflv_3183 | (PF00665) | ||||
| 350054.Mflv_2229 | (PF00067) | ||||
| 350054.Mflv_3188 | (PF13276) | ||||
| 350054.Mflv_4428 | (PF14249) | ||||
| 350054.Mflv_0423 | (PF09995) | ||||
| 350054.Mflv_0425 | (PF00067) | ||||
| 350054.Mflv_2907 | (PF13622) | ||||
| 350054.Mflv_0634 | (PF13452) | ||||
| 350054.Mflv_1587 | (PF00067) | ||||
| 350054.Mflv_1854 | (PF00067) | ||||
| 350054.Mflv_1321 | (PF00067) | ||||
| 350054.Mflv_2753 | (PF00355) | ||||
| 350054.Mflv_2754 | (PF01113) | ||||
| 350054.Mflv_0184 | (PF13738) | ||||
| 350054.Mflv_4564 | (PF00890) | ||||
| 350054.Mflv_4566 | (PF00355) | ||||
| 350054.Mflv_4567 | (PF00890) | ||||
| 350054.Mflv_5016 | (PF00067) | ||||
| 350054.Mflv_0994 | (PF13452) | ||||
| 350054.Mflv_3536 | (PF09995) | ||||
| 350054.Mflv_2103 | (PF02470) | ||||
| 350054.Mflv_1266 | (PF00067) | ||||
| 350054.Mflv_2431 | (PF00067) | ||||
| 350054.Mflv_3258 | (PF07958) | ||||
| 350054.Mflv_3257 | (PF12471) | ||||
| 350054.Mflv_3252 | (PF09995) | ||||
| 350054.Mflv_4282 | (PF00067) | ||||
| 350054.Mflv_4287 | (PF13738) | ||||
| 350054.Mflv_5024 | (PF04072) | ||||
| 350054.Mflv_5025 | (PF04072) | ||||
| 350054.Mflv_5023 | (PF04072) | ||||
| 350054.Mflv_5152 | (PF02689) | ||||
| 350054.Mflv_0613 | (PF00665) | ||||
| 350054.Mflv_1908 | (PF00067) | ||||
| 350054.Mflv_1670 | (PF09995) | ||||
| 350054.Mflv_4752 | (PF13276) | ||||
| 350054.Mflv_3411 | (PF00890) | ||||
| 350054.Mflv_0056 | (PF00067) | ||||
| 350054.Mflv_1277 | (PF01113) | ||||
| 350054.Mflv_4763 | (PF13276) | ||||
| 350054.Mflv_4145 | (PF00067) | ||||
| 350054.Mflv_4143 | (PF13622) | ||||
| 350054.Mflv_4149 | (PF00067) | ||||
| 350054.Mflv_3063 | (PF13622) | ||||
| 350054.Mflv_4383 | (PF06742) | ||||
| 350054.Mflv_4385 | (PF13469) | ||||
| 350054.Mflv_4605 | (PF13738) | ||||
| 350054.Mflv_3385 | (PF04072) | ||||
| 350054.Mflv_2418 | (PF00067) | ||||
| 350054.Mflv_4150 | (PF00067) | ||||
| 350054.Mflv_4557 | (PF13738) | ||||
| 350054.Mflv_4550 | (PF00890) | ||||
| 350054.Mflv_1022 | (PF13622) | ||||
| 350054.Mflv_1027 | (PF03959) | ||||
| 350054.Mflv_2136 | (PF04072) | ||||
| 350054.Mflv_3475 | (PF00067) |
Detailed merged results for each protein sequence
- Detailed merged results as table (merge_results.html)
- Detailed merged results as tab delimited file (merge_results.csv)
Individual results for each protein sequence
- EffectiveELD predictions (PROTEINS.ELD.TXT)
- Predotar predictions using animal/human model (Predotar_output_modelANIMAL.TXT)
- Predotar predictions using plant model (Predotar_output_modelPLANT.TXT)
Genome based results
Summary
- Gram negative: NO (FDR = 0.5 %)
- Functional Type III secretion system: N.D.
- Functional Type IV secretion system: NO (FDR = 7.2 %)
- Functional Type VI secretion system: N.D.
Individual results for each secretion system
Parameters:
==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================
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