Effective results for Anabaena variabilis ATCC 29413 (eggnog40)
Summary
Number of putative secreted proteins: 642
- Predicted by T4SEpre: 0
- Predicted by EffectiveELD: 183 eukaryotic-like domains, contained in 642 proteins (48 high, 594 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): None
Protein based results
Putative secreted proteins (weak evidence indicated by parentheses)
| Protein | EffectiveT3 | EffectiveCCBD | T4SEpre | EffectiveELD | Predotar |
|---|---|---|---|---|---|
| 240292.Ava_4900 | (PF00702) (PF00690) (PF00689) (PF00122) | mitochondrial; (mitochondrial) | |||
| 240292.Ava_4083 | (PF00702) (PF00690) (PF00689) (PF00122) | ER | |||
| 240292.Ava_4235 | (PF00702) (PF00122) | (mitochondrial) | |||
| 240292.Ava_3867 | (PF00400) (PF12894) | (mitochondrial); mitochondrial | |||
| 240292.Ava_3079 | (PF00400) (PF00656) | mitochondrial; (mitochondrial) | |||
| 240292.Ava_2183 | (PF00805) (PF00400) (PF05729) (PF00656) | ||||
| 240292.Ava_4267 | (PF00360) (PF00512) (PF01590) | (plastid) | |||
| 240292.Ava_1178 | (PF13431) (PF13414) | (mitochondrial) | |||
| 240292.Ava_4489 | (PF00512) (PF01590) | mitochondrial | |||
| 240292.Ava_3596 | (PF00512) (PF01590) | (ER) | |||
| 240292.Ava_0384 | (PF16639) (PF01333) | ER | |||
| 240292.Ava_3557 | (PF00689) (PF00690) (PF00702) (PF00122) | ||||
| 240292.Ava_0049 | (PF13646) (PF05729) | (ER); (mitochondrial) | |||
| 240292.Ava_3565 | (PF00702) (PF00690) (PF00689) (PF00122) | ||||
| 240292.Ava_3392 | (PF00702) (PF00690) (PF00689) (PF00122) | ||||
| 240292.Ava_0992 | (PF00702) (PF00122) | (mitochondrial) | |||
| 240292.Ava_3507 | (PF12770) (PF13414) | mitochondrial | |||
| 240292.Ava_3508 | (PF03130) (PF13646) (PF05729) | ER | |||
| 240292.Ava_1904 | (PF00702) (PF00690) (PF00689) (PF00122) | ||||
| 240292.Ava_1901 | (PF00702) (PF00690) (PF00689) (PF00122) | ||||
| 240292.Ava_4087 | (PF00702) (PF00690) (PF00689) (PF00122) | ||||
| 240292.Ava_2808 | (PF12770) | ER | |||
| 240292.Ava_3226 | (PF00512) | (mitochondrial) | |||
| 240292.Ava_4963 | (PF00805) | ER | |||
| 240292.Ava_0792 | (PF00512) | mitochondrial | |||
| 240292.Ava_2499 | (PF00400) | ER | |||
| 240292.Ava_1678 | (PF13414) | (ER); (mitochondrial) | |||
| 240292.Ava_3819 | (PF00512) | ER | |||
| 240292.Ava_2678 | (PF00805) | ER | |||
| 240292.Ava_2675 | (PF00512) | (ER); (plastid) | |||
| 240292.Ava_2477 | (PF12849) | mitochondrial; (mitochondrial) | |||
| 240292.Ava_0305 | (PF12770) | (mitochondrial) | |||
| 240292.Ava_4957 | (PF05154) | (ER); ER | |||
| 240292.Ava_2079 | (PF05685) | (mitochondrial) | |||
| 240292.Ava_0788 | (PF03073) | ER | |||
| 240292.Ava_0789 | (PF03073) | ER | |||
| 240292.Ava_4779 | (PF00512) | (mitochondrial) | |||
| 240292.Ava_1526 | (PF00534) | (ER) | |||
| 240292.Ava_3804 | (PF03652) | (mitochondrial) | |||
| 240292.Ava_1086 | (PF00512) | (mitochondrial) | |||
| 240292.Ava_4040 | (PF12849) | ER | |||
| 240292.Ava_2044 | (PF03073) | ER | |||
| 240292.Ava_1409 | (PF02469) | ER; (ER) | |||
| 240292.Ava_0686 | (PF00805) | ER | |||
| 240292.Ava_0439 | (PF00534) | (ER) | |||
| 240292.Ava_4305 | (PF00512) | ER; (ER) | |||
| 240292.Ava_4432 | (PF00512) | (ER) | |||
| 240292.Ava_1343 | (PF00512) | ER | |||
| 240292.Ava_3275 | (PF00805) (PF00400) (PF05729) | ||||
| 240292.Ava_4841 | (PF00534) | ER | |||
| 240292.Ava_0921 | (PF05685) | ER; (ER) | |||
| 240292.Ava_0929 | (PF05154) | ER | |||
| 240292.Ava_3450 | (PF13414) | ER | |||
| 240292.Ava_3865 | (PF00512) | ER | |||
| 240292.Ava_3866 | (PF04839) | ER | |||
| 240292.Ava_2420 | (PF00512) | ER | |||
| 240292.Ava_3466 | (PF00148) | (ER) | |||
| 240292.Ava_4928 | (PF00512) | ER | |||
| 240292.Ava_3859 | (PF00702) (PF00122) | (ER) | |||
| 240292.Ava_3850 | (PF00512) | mitochondrial | |||
| 240292.Ava_3852 | (PF00360) (PF00512) (PF01590) | ||||
| 240292.Ava_3078 | (PF00400) (PF00656) | (plastid) | |||
| 240292.Ava_1362 | (PF00534) | ER | |||
| 240292.Ava_3293 | (PF05685) | mitochondrial; (mitochondrial) | |||
| 240292.Ava_3452 | (PF00512) | ER | |||
| 240292.Ava_2856 | (PF13414) | ER | |||
| 240292.Ava_4910 | (PF00805) | (mitochondrial) | |||
| 240292.Ava_0578 | (PF13326) | mitochondrial | |||
| 240292.Ava_0394 | (PF03647) | ER | |||
| 240292.Ava_0024 | (PF00512) | (mitochondrial) | |||
| 240292.Ava_2081 | (PF11460) | ER | |||
| 240292.Ava_2080 | (PF10716) | ER | |||
| 240292.Ava_2526 | (PF07444) | ER | |||
| 240292.Ava_0622 | (PF03412) | (mitochondrial) | |||
| 240292.Ava_3948 | (PF05685) | (mitochondrial) | |||
| 240292.Ava_4476 | (PF13646) (PF05729) | (ER) | |||
| 240292.Ava_0566 | (PF11805) | ER | |||
| 240292.Ava_3129 | (PF13367) | ER | |||
| 240292.Ava_0039 | (PF00400) (PF00656) (PF12894) | ||||
| 240292.Ava_2091 | PF07082 | (mitochondrial) | |||
| 240292.Ava_0635 | (PF06514) | ER | |||
| 240292.Ava_4399 | (PF07466) | ER; (ER) | |||
| 240292.Ava_2771 | (PF00512) | ER | |||
| 240292.Ava_2958 | PF05023 | ER | |||
| 240292.Ava_2176 | (PF00512) | ER | |||
| 240292.Ava_2381 | (PF00656) | mitochondrial | |||
| 240292.Ava_1705 | (PF01737) | ER | |||
| 240292.Ava_4036 | (PF13661) | (mitochondrial) | |||
| 240292.Ava_1129 | (PF03412) | (mitochondrial); (plastid) | |||
| 240292.Ava_4825 | (PF12770) | ER | |||
| 240292.Ava_4824 | (PF02469) | ER | |||
| 240292.Ava_1945 | (PF00512) | mitochondrial | |||
| 240292.Ava_2379 | (PF01169) | ER | |||
| 240292.Ava_3974 | (PF08487) | ER | |||
| 240292.Ava_1003 | (PF00360) (PF00512) (PF01590) | ||||
| 240292.Ava_1009 | (PF13414) | ER | |||
| 240292.Ava_4287 | (PF00534) | ER; (ER) | |||
| 240292.Ava_0446 | (PF02790) | ER | |||
| 240292.Ava_3159 | (PF00512) | ER | |||
| 240292.Ava_2972 | (PF12770) | mitochondrial; (mitochondrial) | |||
| 240292.Ava_2975 | (PF13414) | ER | |||
| 240292.Ava_3716 | (PF12849) | ER; (ER) | |||
| 240292.Ava_3577 | (PF02790) | ER | |||
| 240292.Ava_1483 | (PF04278) | ER | |||
| 240292.Ava_1486 | (PF00512) | ER | |||
| 240292.Ava_2563 | (PF00512) | mitochondrial | |||
| 240292.Ava_2565 | (PF12770) | ER | |||
| 240292.Ava_0996 | (PF13646) | (ER) | |||
| 240292.Ava_1721 | (PF12046) | ER | |||
| 240292.Ava_0528 | (PF02790) | ER | |||
| 240292.Ava_0173 | (PF00400) | ER | |||
| 240292.Ava_2581 | (PF00534) | ER | |||
| 240292.Ava_4298 | (PF02790) | ER | |||
| 240292.Ava_3168 | (PF11016) | ER | |||
| 240292.Ava_3368 | (PF00512) | ER | |||
| 240292.Ava_4315 | (PF13301) | ER | |||
| 240292.Ava_4997 | (PF03596) | (ER) | |||
| 240292.Ava_4137 | (PF12770) | ER | |||
| 240292.Ava_0857 | (PF12849) | ER | |||
| 240292.Ava_3991 | (PF01847) | ER | |||
| 240292.Ava_1021 | (PF00512) | ER; (ER) | |||
| 240292.Ava_3373 | (PF12159) | ER | |||
| 240292.Ava_1843 | (PF01716) | ER | |||
| 240292.Ava_5032 | (PF00400) (PF00805) | (mitochondrial) | |||
| 240292.Ava_1055 | (PF01786) | ER | |||
| 240292.Ava_4183 | (PF12770) | mitochondrial | |||
| 240292.Ava_4189 | (PF00805) | ER; (ER) | |||
| 240292.Ava_3349 | (PF00534) | mitochondrial | |||
| 240292.Ava_3528 | (PF13646) | ER; (ER) | |||
| 240292.Ava_1908 | (PF02469) | (ER) | |||
| 240292.Ava_4976 | (PF13301) | ER | |||
| 240292.Ava_1879 | (PF11152) | (ER) | |||
| 240292.Ava_1478 | (PF02507) | ER | |||
| 240292.Ava_0650 | (PF05729) | ER | |||
| 240292.Ava_0898 | (PF04481) | (mitochondrial) | |||
| 240292.Ava_2467 | (PF12849) | ER | |||
| 240292.Ava_2466 | (PF00512) | ER | |||
| 240292.Ava_4793 | (PF01094) | ER | |||
| 240292.Ava_1260 | (PF13301) | ER | |||
| 240292.Ava_1269 | (PF04755) | mitochondrial; (mitochondrial) | |||
| 240292.Ava_4086 | (PF00512) | ER | |||
| 240292.Ava_2803 | (PF00512) (PF01590) | ||||
| 240292.Ava_3535 | (PF00512) (PF01590) | ||||
| 240292.Ava_2934 | (PF03130) (PF13646) | ||||
| 240292.Ava_2328 | (PF00512) (PF01590) | ||||
| 240292.Ava_4451 | (PF02468) | ER; not used | |||
| 240292.Ava_2928 | (PF03130) (PF13646) | ||||
| 240292.Ava_0129 | PF13384 (PF13592) | ||||
| 240292.Ava_2074 | (PF16166) | (ER) | |||
| 240292.Ava_4554 | (PF13431) (PF13414) | ||||
| 240292.Ava_4225 | (PF03412) | (plastid) | |||
| 240292.Ava_4135 | (PF00512) | (mitochondrial) | |||
| 240292.Ava_1880 | (PF05685) | (mitochondrial) | |||
| 240292.Ava_1531 | (PF01679) | ER; not used | |||
| 240292.Ava_3657 | (PF00805) | (mitochondrial) | |||
| 240292.Ava_2459 | PF11717 PF05641 | ||||
| 240292.Ava_0928 | (PF00226) (PF13414) | ||||
| 240292.Ava_2202 | (PF05685) | (mitochondrial) | |||
| 240292.Ava_3001 | (PF02532) | ER; not used | |||
| 240292.Ava_2845 | (PF00512) (PF01590) | ||||
| 240292.Ava_2212 | (PF12770) (PF13414) | ||||
| 240292.Ava_4457 | (PF00512) (PF01590) | ||||
| 240292.Ava_4073 | (PF03130) (PF13646) | ||||
| 240292.Ava_1168 | (PF00512) (PF01590) | ||||
| 240292.Ava_2181 | PF13384 (PF13592) | ||||
| 240292.Ava_2184 | (PF00400) (PF00656) | ||||
| 240292.Ava_1980 | (PF00512) (PF01590) | ||||
| 240292.Ava_1564 | (PF00512) (PF01590) | ||||
| 240292.Ava_1628 | (PF00512) | (mitochondrial) | |||
| 240292.Ava_3848 | (PF00702) (PF00122) | ||||
| 240292.Ava_1194 | (PF00702) (PF00122) | ||||
| 240292.Ava_4660 | PF02672 | (mitochondrial) | |||
| 240292.Ava_1173 | PF13384 (PF13592) | ||||
| 240292.Ava_4716 | (PF00512) (PF01590) | ||||
| 240292.Ava_4345 | (PF00512) (PF01590) | ||||
| 240292.Ava_2239 | (PF00512) (PF01590) | ||||
| 240292.Ava_2524 | (PF00512) (PF01590) | ||||
| 240292.Ava_0362 | (PF00512) (PF01590) | ||||
| 240292.Ava_4275 | (PF00226) (PF13355) | ||||
| 240292.Ava_1851a | (PF00796) | ER; not used | |||
| 240292.Ava_4701 | (PF00512) (PF01590) | ||||
| 240292.Ava_1969 | (PF04755) | (mitochondrial) | |||
| 240292.Ava_2147 | (PF00400) | (plastid) | |||
| 240292.Ava_1548 | (PF00702) (PF00122) | ||||
| 240292.Ava_1541 | (PF00400) | (ER) | |||
| 240292.Ava_5044 | (PF07466) | (ER) | |||
| 240292.Ava_1605 | PF13384 (PF13592) | ||||
| 240292.Ava_2556 | PF13384 (PF13592) | ||||
| 240292.Ava_4027 | (PF00148) | (plastid) | |||
| 240292.Ava_0045 | (PF12849) | (ER) | |||
| 240292.Ava_0542 | (PF12770) (PF14938) | ||||
| 240292.Ava_1125 | (PF00702) (PF00122) | ||||
| 240292.Ava_2944 | (PF00512) (PF01590) | ||||
| 240292.Ava_4723 | (PF00512) (PF01590) | ||||
| 240292.Ava_0054 | (PF12770) | (mitochondrial) | |||
| 240292.Ava_1283 | (PF09366) | (plastid) | |||
| 240292.Ava_0834 | (PF01789) | (mitochondrial) | |||
| 240292.Ava_0726 | (PF05685) | (ER) | |||
| 240292.Ava_0612 | (PF00512) (PF01590) | ||||
| 240292.Ava_2283 | (PF00534) (PF00862) | ||||
| 240292.Ava_5064 | (PF00702) (PF00122) | ||||
| 240292.Ava_0537 | (PF00805) (PF05729) | ||||
| 240292.Ava_2817 | (PF00400) | (ER) | |||
| 240292.Ava_4537 | (PF03130) (PF13646) | ||||
| 240292.Ava_0667 | (PF01169) | (plastid) | |||
| 240292.Ava_4631 | (PF00512) (PF01590) | ||||
| 240292.Ava_0521 | (PF00512) (PF01590) | ||||
| 240292.Ava_3360 | (PF00534) | (ER) | |||
| 240292.Ava_1210 | (PF00512) (PF01590) | ||||
| 240292.Ava_3189 | PF13384 (PF13592) | ||||
| 240292.Ava_1852 | (PF01788) | (mitochondrial); not used | |||
| 240292.Ava_1855 | (PF00284) (PF00283) | ||||
| 240292.Ava_1854 | (PF00283) | (ER); not used | |||
| 240292.Ava_3995 | (PF00512) (PF01590) | ||||
| 240292.Ava_0515 | (PF01947) | (plastid) | |||
| 240292.Ava_1029 | (PF00512) (PF01590) | ||||
| 240292.Ava_0519 | (PF07444) | (plastid) | |||
| 240292.Ava_1205 | PF13384 (PF13592) | ||||
| 240292.Ava_3771 | (PF00512) (PF01590) | ||||
| 240292.Ava_0083 | (PF00512) (PF01590) | ||||
| 240292.Ava_0864 | (PF00805) (PF00226) | ||||
| 240292.Ava_2004 | (PF13431) (PF13414) | ||||
| 240292.Ava_4613 | PF13384 (PF13592) | ||||
| 240292.Ava_4504 | (PF00512) (PF01590) | ||||
| 240292.Ava_4503 | (PF00512) (PF01590) | ||||
| 240292.Ava_0472 | PF13384 (PF13592) | ||||
| 240292.Ava_1270 | (PF02427) | (mitochondrial) | |||
| 240292.Ava_0253 | (PF14273) | (plastid) | |||
| 240292.Ava_1909 | (PF01679) | ER; not used | |||
| 240292.Ava_5023 | (PF03596) | (plastid) | |||
| 240292.Ava_5025 | (PF03596) | (ER) | |||
| 240292.Ava_1041 | (PF00534) | (mitochondrial) | |||
| 240292.Ava_3682 | (PF06298) | ER; not used | |||
| 240292.Ava_3753 | (PF00534) (PF00862) | ||||
| 240292.Ava_2935 | (PF13646) | ||||
| 240292.Ava_0221 | (PF14234) | ||||
| 240292.Ava_1312 | (PF01025) | ||||
| 240292.Ava_1916 | (PF05729) | ||||
| 240292.Ava_1919 | (PF08041) | not used | |||
| 240292.Ava_0136 | (PF06485) | ||||
| 240292.Ava_4600 | (PF01106) | ||||
| 240292.Ava_4964 | (PF00805) | ||||
| 240292.Ava_2579 | (PF06206) | ||||
| 240292.Ava_0790 | (PF12263) | ||||
| 240292.Ava_2254 | (PF01590) | ||||
| 240292.Ava_2257 | PF06405 | ||||
| 240292.Ava_1679 | (PF00076) | ||||
| 240292.Ava_2433 | (PF00534) | ||||
| 240292.Ava_4326 | (PF00512) | ||||
| 240292.Ava_4567 | (PF05598) | ||||
| 240292.Ava_0413 | (PF00512) | ||||
| 240292.Ava_4783 | (PF00512) | ||||
| 240292.Ava_3326 | (PF05685) | ||||
| 240292.Ava_0307 | (PF13367) | ||||
| 240292.Ava_0303 | (PF10664) | ||||
| 240292.Ava_1254 | (PF00805) | ||||
| 240292.Ava_1256 | (PF13367) | ||||
| 240292.Ava_4450 | (PF00737) | ||||
| 240292.Ava_1097 | (PF03412) | ||||
| 240292.Ava_1094 | (PF05019) | ||||
| 240292.Ava_3789 | (PF05598) | ||||
| 240292.Ava_3788 | (PF13911) | ||||
| 240292.Ava_3034 | (PF01106) | ||||
| 240292.Ava_3033 | (PF00512) | ||||
| 240292.Ava_0233 | (PF05598) | ||||
| 240292.Ava_0238 | (PF00512) | ||||
| 240292.Ava_2929 | (PF13646) | ||||
| 240292.Ava_0128 | (PF00076) | ||||
| 240292.Ava_0125 | (PF12617) | ||||
| 240292.Ava_4956 | (PF11210) | ||||
| 240292.Ava_1891 | PF05542 | ||||
| 240292.Ava_0727 | (PF00534) | ||||
| 240292.Ava_0784 | PF14159 | ||||
| 240292.Ava_0785 | (PF11371) | ||||
| 240292.Ava_1411 | (PF00504) | not used | |||
| 240292.Ava_1527 | (PF00534) | ||||
| 240292.Ava_1060 | (PF05685) | ||||
| 240292.Ava_1664 | (PF05685) | ||||
| 240292.Ava_3805 | (PF12527) | ||||
| 240292.Ava_4229 | (PF05685) | ||||
| 240292.Ava_1790 | (PF05685) | ||||
| 240292.Ava_2445 | (PF01241) | ||||
| 240292.Ava_4316 | (PF09366) | ||||
| 240292.Ava_4425 | (PF01590) | ||||
| 240292.Ava_4136 | (PF00512) | ||||
| 240292.Ava_1242 | PF00124 | ||||
| 240292.Ava_1241 | (PF02392) | ||||
| 240292.Ava_1088 | (PF05685) | ||||
| 240292.Ava_3793 | (PF10063) | ||||
| 240292.Ava_4049 | PF14159 | ||||
| 240292.Ava_1339 | (PF00400) | ||||
| 240292.Ava_3244 | (PF05729) | ||||
| 240292.Ava_3246 | (PF00656) | ||||
| 240292.Ava_1886 | (PF00648) | ||||
| 240292.Ava_1887 | (PF05598) | ||||
| 240292.Ava_1888 | (PF13646) | ||||
| 240292.Ava_2047 | (PF03055) | ||||
| 240292.Ava_2309 | (PF05685) | ||||
| 240292.Ava_1404 | (PF13646) | ||||
| 240292.Ava_2273 | (PF04455) | ||||
| 240292.Ava_0753 | (PF00805) | ||||
| 240292.Ava_3878 | (PF12770) | ||||
| 240292.Ava_4548 | (PF13646) | ||||
| 240292.Ava_0241 | (PF11360) | ||||
| 240292.Ava_3906 | (PF02341) | ||||
| 240292.Ava_3905 | (PF00101) | ||||
| 240292.Ava_3903 | (PF00101) | ||||
| 240292.Ava_4307 | (PF00805) | ||||
| 240292.Ava_3301 | (PF00534) | ||||
| 240292.Ava_3300 | (PF00076) | ||||
| 240292.Ava_4433 | (PF00512) | ||||
| 240292.Ava_4121 | PF00124 | ||||
| 240292.Ava_0321 | (PF11051) | ||||
| 240292.Ava_3019 | (PF08854) | ||||
| 240292.Ava_4051 | (PF00148) | ||||
| 240292.Ava_0215 | (PF05685) | ||||
| 240292.Ava_1342 | PF13384 | ||||
| 240292.Ava_1211a | PF03742 | not used | |||
| 240292.Ava_0100 | (PF05685) | ||||
| 240292.Ava_4843 | (PF00534) | ||||
| 240292.Ava_4849 | (PF00805) | ||||
| 240292.Ava_0927 | (PF08855) | ||||
| 240292.Ava_0690 | (PF11909) | ||||
| 240292.Ava_1503 | (PF05685) | ||||
| 240292.Ava_1502 | (PF05685) | ||||
| 240292.Ava_1506 | (PF01405) | not used | |||
| 240292.Ava_1641 | (PF02943) | ||||
| 240292.Ava_2512 | PF00124 | ||||
| 240292.Ava_4202 | (PF05685) | ||||
| 240292.Ava_4209 | (PF04983) | ||||
| 240292.Ava_4208 | (PF04983) | ||||
| 240292.Ava_2422 | PF05542 | ||||
| 240292.Ava_4337 | (PF13301) | ||||
| 240292.Ava_3915 | (PF01106) | ||||
| 240292.Ava_3917 | (PF00148) | ||||
| 240292.Ava_3311 | (PF11965) | ||||
| 240292.Ava_4110 | (PF00656) | ||||
| 240292.Ava_0359 | (PF03982) | ||||
| 240292.Ava_0355 | (PF00512) | ||||
| 240292.Ava_4682 | (PF00400) | ||||
| 240292.Ava_0597 | PF14159 | ||||
| 240292.Ava_0593 | (PF03912) | ||||
| 240292.Ava_2736 | (PF00226) | ||||
| 240292.Ava_2735 | (PF14249) | ||||
| 240292.Ava_3009 | (PF00512) | ||||
| 240292.Ava_3004 | (PF01590) | ||||
| 240292.Ava_3002 | (PF12600) | ||||
| 240292.Ava_3003 | (PF00512) | ||||
| 240292.Ava_1351 | (PF00226) | ||||
| 240292.Ava_1352 | (PF08487) | ||||
| 240292.Ava_1357 | (PF05685) | ||||
| 240292.Ava_3467 | (PF00512) | ||||
| 240292.Ava_0175 | (PF00504) | not used | |||
| 240292.Ava_0211 | (PF00805) | ||||
| 240292.Ava_4923 | (PF00805) | ||||
| 240292.Ava_0006 | (PF12049) | ||||
| 240292.Ava_4855 | (PF00400) | ||||
| 240292.Ava_4850 | (PF00805) | ||||
| 240292.Ava_4852 | (PF09353) | ||||
| 240292.Ava_3711 | (PF05685) | ||||
| 240292.Ava_0915 | (PF11341) | ||||
| 240292.Ava_0916 | (PF00226) | ||||
| 240292.Ava_0918 | (PF00226) | ||||
| 240292.Ava_1630 | PF05023 | ||||
| 240292.Ava_2507 | (PF00226) | ||||
| 240292.Ava_3854 | (PF00512) | ||||
| 240292.Ava_1186 | (PF00534) | ||||
| 240292.Ava_1182 | (PF03040) | ||||
| 240292.Ava_1743 | (PF05685) | ||||
| 240292.Ava_4320 | (PF01590) | ||||
| 240292.Ava_2434 | (PF00534) | ||||
| 240292.Ava_2439 | (PF00512) | ||||
| 240292.Ava_3925 | (PF05685) | ||||
| 240292.Ava_3926 | (PF05685) | ||||
| 240292.Ava_3675 | (PF05598) | ||||
| 240292.Ava_4696 | (PF00512) | ||||
| 240292.Ava_4210 | PF11960 | ||||
| 240292.Ava_4585 | (PF11623) | ||||
| 240292.Ava_1365 | (PF00534) | ||||
| 240292.Ava_2980 | (PF02469) | ||||
| 240292.Ava_2982 | PF14159 | ||||
| 240292.Ava_2988 | (PF05685) | ||||
| 240292.Ava_2851 | (PF00400) | ||||
| 240292.Ava_4913 | (PF11833) | ||||
| 240292.Ava_3043 | (PF00512) | ||||
| 240292.Ava_1984 | (PF00076) | ||||
| 240292.Ava_1982 | (PF03936) | ||||
| 240292.Ava_4867 | (PF13646) | ||||
| 240292.Ava_0904 | (PF03073) | ||||
| 240292.Ava_1562 | (PF00512) | ||||
| 240292.Ava_1561 | (PF00512) | ||||
| 240292.Ava_1624 | (PF00400) | ||||
| 240292.Ava_0760 | (PF01025) | ||||
| 240292.Ava_0761 | (PF05685) | ||||
| 240292.Ava_3843 | (PF02136) | ||||
| 240292.Ava_2405 | (PF00223) | ||||
| 240292.Ava_2406 | (PF00223) | ||||
| 240292.Ava_3932 | (PF00148) | ||||
| 240292.Ava_3933 | (PF00148) | ||||
| 240292.Ava_3930 | (PF00148) | ||||
| 240292.Ava_4469 | (PF00101) | ||||
| 240292.Ava_0377 | (PF01025) | ||||
| 240292.Ava_0371 | (PF05685) | ||||
| 240292.Ava_0379 | (PF00226) | ||||
| 240292.Ava_4093 | (PF00805) | ||||
| 240292.Ava_4269 | PF10184 | ||||
| 240292.Ava_2711 | PF01745 | ||||
| 240292.Ava_1379 | (PF00534) | ||||
| 240292.Ava_0481 | (PF00534) | ||||
| 240292.Ava_0486 | (PF11347) | ||||
| 240292.Ava_3281 | (PF03652) | ||||
| 240292.Ava_3445 | (PF00534) | ||||
| 240292.Ava_4717 | (PF09265) | ||||
| 240292.Ava_4480 | (PF08853) | ||||
| 240292.Ava_4909 | (PF03596) | ||||
| 240292.Ava_0020 | (PF00805) | ||||
| 240292.Ava_0027 | (PF00076) | ||||
| 240292.Ava_0970 | (PF14328) | ||||
| 240292.Ava_0974 | (PF00076) | ||||
| 240292.Ava_2159 | (PF06485) | ||||
| 240292.Ava_2152 | (PF00512) | ||||
| 240292.Ava_2150 | (PF00512) | ||||
| 240292.Ava_2231 | (PF02136) | ||||
| 240292.Ava_2237 | (PF05685) | ||||
| 240292.Ava_5057 | (PF00534) | ||||
| 240292.Ava_4486a | (PF05151) | not used | |||
| 240292.Ava_2416 | (PF08847) | ||||
| 240292.Ava_3943 | PF02672 | ||||
| 240292.Ava_0363 | (PF05598) | ||||
| 240292.Ava_2707 | (PF10674) | ||||
| 240292.Ava_3055 | (PF05598) | ||||
| 240292.Ava_3724 | PF07082 | ||||
| 240292.Ava_3721 | (PF00512) | ||||
| 240292.Ava_3059 | (PF14234) | ||||
| 240292.Ava_3728 | (PF03912) | ||||
| 240292.Ava_4019 | (PF02529) | not used | |||
| 240292.Ava_1149 | (PF00512) | ||||
| 240292.Ava_3611 | (PF00656) | ||||
| 240292.Ava_4702 | (PF00512) | ||||
| 240292.Ava_4492 | (PF13414) | ||||
| 240292.Ava_0385 | (PF08802) | ||||
| 240292.Ava_0386 | (PF11267) | ||||
| 240292.Ava_0124 | (PF00512) | ||||
| 240292.Ava_2891 | (PF00400) | ||||
| 240292.Ava_4807 | (PF00512) | ||||
| 240292.Ava_2148 | (PF00512) | ||||
| 240292.Ava_2149 | (PF00512) | ||||
| 240292.Ava_1547 | (PF05154) | ||||
| 240292.Ava_5045 | (PF00534) | ||||
| 240292.Ava_1604 | (PF05598) | ||||
| 240292.Ava_2398 | (PF03412) | ||||
| 240292.Ava_1774 | (PF10013) | not used | |||
| 240292.Ava_4642 | (PF00076) | ||||
| 240292.Ava_4645 | (PF01590) | ||||
| 240292.Ava_4398 | (PF00805) | ||||
| 240292.Ava_2772 | (PF00805) | ||||
| 240292.Ava_4246 | (PF01106) | ||||
| 240292.Ava_4249 | (PF00148) | ||||
| 240292.Ava_4248 | (PF00148) | ||||
| 240292.Ava_3735 | (PF01590) | ||||
| 240292.Ava_4029 | (PF00148) | ||||
| 240292.Ava_4028 | (PF00148) | ||||
| 240292.Ava_4026 | (PF00148) | ||||
| 240292.Ava_4021 | (PF05598) | ||||
| 240292.Ava_1394 | (PF14273) | ||||
| 240292.Ava_1391 | (PF08975) | ||||
| 240292.Ava_2609 | (PF05685) | ||||
| 240292.Ava_3132 | (PF00076) | ||||
| 240292.Ava_3554 | (PF00504) | not used | |||
| 240292.Ava_3553 | PF00124 | ||||
| 240292.Ava_4818 | (PF00805) | ||||
| 240292.Ava_4813 | (PF00400) | ||||
| 240292.Ava_4814 | (PF12770) | ||||
| 240292.Ava_1559 | (PF00512) | ||||
| 240292.Ava_1552 | (PF13414) | ||||
| 240292.Ava_0828 | (PF01590) | ||||
| 240292.Ava_1556 | (PF00400) | ||||
| 240292.Ava_4488 | (PF02533) | not used | |||
| 240292.Ava_0734 | (PF06799) | ||||
| 240292.Ava_0736 | (PF00534) | ||||
| 240292.Ava_3895 | (PF09990) | ||||
| 240292.Ava_3898 | (PF05685) | ||||
| 240292.Ava_1709 | (PF04423) | ||||
| 240292.Ava_0609 | (PF12899) | ||||
| 240292.Ava_0605 | (PF00805) | ||||
| 240292.Ava_4650 | (PF11947) | ||||
| 240292.Ava_4383 | (PF03412) | ||||
| 240292.Ava_4387 | (PF05685) | ||||
| 240292.Ava_4388 | PF05115 | not used | |||
| 240292.Ava_4251 | (PF00148) | ||||
| 240292.Ava_1122 | (PF00534) | ||||
| 240292.Ava_3149 | (PF05685) | ||||
| 240292.Ava_3141 | (PF12770) | ||||
| 240292.Ava_3416 | (PF05598) | ||||
| 240292.Ava_3411 | (PF00534) | ||||
| 240292.Ava_3144 | (PF10999) | ||||
| 240292.Ava_4722 | (PF02531) | ||||
| 240292.Ava_1237 | (PF03092) | ||||
| 240292.Ava_1236 | (PF03055) | ||||
| 240292.Ava_3569 | (PF00534) | ||||
| 240292.Ava_0055 | (PF00512) | ||||
| 240292.Ava_4826 | (PF05685) | ||||
| 240292.Ava_1493 | (PF16095) | ||||
| 240292.Ava_1492 | (PF05685) | ||||
| 240292.Ava_2167 | (PF02469) | ||||
| 240292.Ava_2168 | (PF03055) | ||||
| 240292.Ava_2540 | (PF01241) | ||||
| 240292.Ava_1831 | (PF05685) | ||||
| 240292.Ava_2376 | (PF00805) | ||||
| 240292.Ava_2370 | PF13384 | ||||
| 240292.Ava_2378 | (PF01169) | ||||
| 240292.Ava_1719 | (PF00512) | ||||
| 240292.Ava_1716 | (PF00512) | ||||
| 240292.Ava_0613 | (PF00512) | ||||
| 240292.Ava_3976 | (PF00512) | ||||
| 240292.Ava_3975 | (PF00512) | ||||
| 240292.Ava_0539 | (PF05598) | ||||
| 240292.Ava_0538 | (PF12452) | ||||
| 240292.Ava_0531 | PF10184 | ||||
| 240292.Ava_0535 | PF08417 | ||||
| 240292.Ava_1005 | (PF00512) | ||||
| 240292.Ava_0286 | (PF00400) | ||||
| 240292.Ava_0280 | (PF12204) | ||||
| 240292.Ava_2629 | (PF00400) | ||||
| 240292.Ava_1139 | (PF00534) | ||||
| 240292.Ava_2971 | (PF00400) | ||||
| 240292.Ava_3404 | (PF11378) | ||||
| 240292.Ava_4753 | (PF00512) | ||||
| 240292.Ava_0198 | (PF00512) | ||||
| 240292.Ava_3710 | (PF03055) | ||||
| 240292.Ava_1223 | (PF01590) | ||||
| 240292.Ava_3572 | (PF00534) | ||||
| 240292.Ava_3573 | (PF00534) | ||||
| 240292.Ava_3578 | (PF09990) | ||||
| 240292.Ava_3579 | (PF09990) | ||||
| 240292.Ava_3083 | (PF05685) | ||||
| 240292.Ava_0064 | (PF01590) | ||||
| 240292.Ava_0067 | (PF05729) | ||||
| 240292.Ava_0066 | (PF00512) | ||||
| 240292.Ava_1954 | (PF00512) | ||||
| 240292.Ava_0842 | (PF00534) | ||||
| 240292.Ava_0847 | (PF00534) | ||||
| 240292.Ava_2022 | (PF00226) | ||||
| 240292.Ava_2562 | (PF00512) | ||||
| 240292.Ava_2561 | (PF00534) | ||||
| 240292.Ava_2567 | (PF00223) | ||||
| 240292.Ava_0998 | (PF05685) | ||||
| 240292.Ava_0995 | (PF05598) | ||||
| 240292.Ava_0997 | (PF05598) | ||||
| 240292.Ava_1723 | (PF12263) | ||||
| 240292.Ava_0662 | (PF01590) | ||||
| 240292.Ava_1032 | (PF04483) | ||||
| 240292.Ava_4296 | (PF09990) | ||||
| 240292.Ava_4297 | (PF09990) | ||||
| 240292.Ava_0290 | (PF00805) | ||||
| 240292.Ava_0459 | (PF05019) | ||||
| 240292.Ava_2634 | (PF05598) | ||||
| 240292.Ava_2631 | (PF00534) | ||||
| 240292.Ava_2831 | (PF06999) | ||||
| 240292.Ava_3169 | (PF12095) | ||||
| 240292.Ava_4743 | (PF05598) | ||||
| 240292.Ava_3362 | (PF00512) | ||||
| 240292.Ava_0188 | (PF00707) | ||||
| 240292.Ava_2968 | (PF05598) | ||||
| 240292.Ava_2100 | (PF00534) | ||||
| 240292.Ava_2104 | (PF00400) | ||||
| 240292.Ava_0853 | (PF00534) | ||||
| 240292.Ava_0854 | (PF00534) | ||||
| 240292.Ava_1853 | PF02419 | not used | |||
| 240292.Ava_1583 | PF00124 | ||||
| 240292.Ava_1585 | (PF00805) | ||||
| 240292.Ava_1588 | (PF05685) | ||||
| 240292.Ava_2038 | (PF00707) | ||||
| 240292.Ava_0984 | (PF00226) | ||||
| 240292.Ava_0518 | (PF06596) | not used | |||
| 240292.Ava_4510 | PF02672 | ||||
| 240292.Ava_4516 | (PF12849) | ||||
| 240292.Ava_0467 | (PF05685) | ||||
| 240292.Ava_1115 | (PF00534) | ||||
| 240292.Ava_3171 | (PF00512) | ||||
| 240292.Ava_4775 | (PF00534) | ||||
| 240292.Ava_3179 | (PF11998) | ||||
| 240292.Ava_4770 | (PF05598) | ||||
| 240292.Ava_3374 | (PF10693) | ||||
| 240292.Ava_3377 | (PF08802) | ||||
| 240292.Ava_3778 | (PF01590) | ||||
| 240292.Ava_3770 | (PF05189) | ||||
| 240292.Ava_3773 | (PF05685) | ||||
| 240292.Ava_3021 | (PF00805) | ||||
| 240292.Ava_2916 | (PF00504) | ||||
| 240292.Ava_1935 | (PF05598) | ||||
| 240292.Ava_3204 | (PF01590) | ||||
| 240292.Ava_2138 | PF00124 | ||||
| 240292.Ava_2131 | (PF13414) | ||||
| 240292.Ava_1597 | PF00124 | ||||
| 240292.Ava_0869 | (PF00504) | ||||
| 240292.Ava_0868 | (PF00504) | ||||
| 240292.Ava_1841 | (PF00400) | ||||
| 240292.Ava_2412 | PF05542 | ||||
| 240292.Ava_1448 | (PF00702) | ||||
| 240292.Ava_1442 | (PF05685) | ||||
| 240292.Ava_1443 | (PF05685) | ||||
| 240292.Ava_0649 | (PF00512) | ||||
| 240292.Ava_0647 | (PF00512) | ||||
| 240292.Ava_0643 | (PF05685) | ||||
| 240292.Ava_4340 | (PF06999) | ||||
| 240292.Ava_4343 | (PF00512) | ||||
| 240292.Ava_1050 | PF02672 | ||||
| 240292.Ava_1056 | PF08417 | ||||
| 240292.Ava_3344 | (PF05685) | ||||
| 240292.Ava_1272 | (PF11910) | ||||
| 240292.Ava_3525 | (PF12770) | ||||
| 240292.Ava_3526 | (PF00512) | ||||
| 240292.Ava_0090 | (PF00534) | ||||
| 240292.Ava_0091 | (PF01590) | ||||
| 240292.Ava_1304 | (PF00226) | ||||
| 240292.Ava_1303 | PF08417 | ||||
| 240292.Ava_2128 | (PF05685) | ||||
| 240292.Ava_2126 | (PF05685) | ||||
| 240292.Ava_4974 | (PF13414) | ||||
| 240292.Ava_1940 | (PF11965) | ||||
| 240292.Ava_0873 | (PF00512) | ||||
| 240292.Ava_1875 | (PF05685) | ||||
| 240292.Ava_2016 | (PF02469) | ||||
| 240292.Ava_4885 | (PF00512) | ||||
| 240292.Ava_4888 | (PF11282) | ||||
| 240292.Ava_2339 | PF13384 | ||||
| 240292.Ava_2330 | (PF00148) | ||||
| 240292.Ava_2334 | (PF05685) | ||||
| 240292.Ava_1477 | (PF01701) | not used | |||
| 240292.Ava_1476 | (PF02605) | ||||
| 240292.Ava_1686 | (PF11317) | ||||
| 240292.Ava_4579 | (PF06206) | ||||
| 240292.Ava_4577 | (PF11264) | ||||
| 240292.Ava_0401 | (PF02941) | ||||
| 240292.Ava_2664 | (PF05421) | ||||
| 240292.Ava_2463 | PF10229 | ||||
| 240292.Ava_2460 | PF00124 | ||||
| 240292.Ava_4401 | (PF00512) | ||||
| 240292.Ava_4082 | (PF00805) | ||||
| 240292.Ava_0316 | (PF13646) | ||||
| 240292.Ava_0314 | (PF00512) |
Detailed merged results for each protein sequence
- Detailed merged results as table (merge_results.html)
- Detailed merged results as tab delimited file (merge_results.csv)
Individual results for each protein sequence
- EffectiveELD predictions (PROTEINS.ELD.TXT)
- Predotar predictions using animal/human model (Predotar_output_modelANIMAL.TXT)
- Predotar predictions using plant model (Predotar_output_modelPLANT.TXT)
Genome based results
Summary
- Gram negative: YES (FDR = 0.5 %)
- Functional Type III secretion system: NO (FDR = 12.5 %)
- Functional Type IV secretion system: NO (FDR = 7.2 %)
- Functional Type VI secretion system: NO (FDR = 7.7 %)
Individual results for each secretion system
- List of 100 most important COGs/NOGs for prediction of functional Type III secretion system (T3_top100_COGS.xls)
- List of 100 most important COGs/NOGs for prediction of functional Type IV secretion system (T4_top100_COGS.xls)
- List of 100 most important COGs/NOGs for prediction of functional Type VI secretion system (T6_top100_COGS.xls)
- List of COGs assigned to Type III secretion system in KEGG (T3SS_KEGG_cmp.xls)
- List of COGs assigned to Type IV secretion system in KEGG (T4SS_KEGG_cmp.xls)
- List of COGs assigned to Type VI secretion system in KEGG (T6SS_KEGG_cmp.xls)
Parameters:
==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================
Release announcements
News
Latest publications
Contact
- +43 1 4277 76681
- +43 1 4277 876681
- contact.cube@univie.ac.at
