Metamenu

Effective results for Acidovorax sp. JS42 (eggnog40)

Summary

Number of putative secreted proteins: 176
- Predicted by T4SEpre: 0
- Predicted by EffectiveELD: 23 eukaryotic-like domains, contained in 176 proteins (49 high, 127 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): None

Protein based results

Putative secreted proteins (weak evidence indicated by parentheses)

ProteinEffectiveT3EffectiveCCBDT4SEpreEffectiveELDPredotar
232721.Ajs_1863(PF13358) PF13565(mitochondrial)
232721.Ajs_1754(PF13358) PF13565(mitochondrial)
232721.Ajs_1471(PF02239)ER
232721.Ajs_1473(PF02694)ER
232721.Ajs_1476(PF00403)ER
232721.Ajs_4176(PF10502)ER
232721.Ajs_4318(PF10502)ER; (ER)
232721.Ajs_2660(PF00665)(mitochondrial)
232721.Ajs_1326(PF02694)ER
232721.Ajs_2692(PF04536)mitochondrial
232721.Ajs_2693(PF04536)mitochondrial
232721.Ajs_1184(PF02239)ER
232721.Ajs_1509(PF04536)mitochondrial; (mitochondrial)
232721.Ajs_1299(PF00403)ER
232721.Ajs_2087(PF02694)ER
232721.Ajs_1510(PF04536)(ER); ER
232721.Ajs_3050(PF00665)(mitochondrial)
232721.Ajs_3052(PF00665)(mitochondrial)
232721.Ajs_3593(PF01695)(ER)
232721.Ajs_3594(PF00665)mitochondrial; (mitochondrial)
232721.Ajs_3269(PF10502)ER
232721.Ajs_1733(PF01695)(ER)
232721.Ajs_1828(PF06733)(ER)
232721.Ajs_1912(PF02239)ER
232721.Ajs_1910(PF02239)ER
232721.Ajs_0315(PF04536)ER
232721.Ajs_0314(PF04536)mitochondrial; (mitochondrial)
232721.Ajs_2927PF05598 (PF01609)(mitochondrial)
232721.Ajs_1855(PF00665)mitochondrial
232721.Ajs_1854(PF01695)(ER)
232721.Ajs_0090(PF13358) PF13565
232721.Ajs_2004PF05598 (PF01609)
232721.Ajs_1116(PF01610)(ER)
232721.Ajs_1844(PF00665)(mitochondrial)
232721.Ajs_2866PF05598 (PF01609)
232721.Ajs_2865(PF13358) PF13565
232721.Ajs_1062(PF13358) PF13565
232721.Ajs_2122PF05598 (PF01609)
232721.Ajs_1874(PF13358) PF13565
232721.Ajs_3331PF05598 (PF01609)
232721.Ajs_1867(PF01610)(ER)
232721.Ajs_2200(PF01610)(ER)
232721.Ajs_2685PF05598 (PF01609)
232721.Ajs_2691(PF10996)(plastid)
232721.Ajs_4158(PF06733)(plastid)
232721.Ajs_0909(PF13358) PF13565
232721.Ajs_1751(PF13358) PF13565
232721.Ajs_1752(PF13358) PF13565
232721.Ajs_1753PF05598 (PF01609)
232721.Ajs_0590PF05598 (PF01609)
232721.Ajs_0754PF05598 (PF01609)
232721.Ajs_0576PF05598 (PF01609)
232721.Ajs_0806PF05598 (PF01609)
232721.Ajs_1431PF05598 (PF01609)
232721.Ajs_1519PF05598 (PF01609)
232721.Ajs_2954PF05598 (PF01609)
232721.Ajs_3613PF05598 (PF01609)
232721.Ajs_0548(PF13358) PF13565
232721.Ajs_1380(PF13358) PF13565
232721.Ajs_4135(PF13358) PF13565
232721.Ajs_3918PF05598 (PF01609)
232721.Ajs_2718PF05598 (PF01609)
232721.Ajs_2404(PF02201)(mitochondrial)
232721.Ajs_1379(PF13358) PF13565
232721.Ajs_4072(PF13358) PF13565
232721.Ajs_3703PF05598 (PF01609)
232721.Ajs_2148(PF01610)(ER)
232721.Ajs_2149(PF13358) PF13565
232721.Ajs_1924(PF13358) PF13565
232721.Ajs_1871PF05598 (PF01609)
232721.Ajs_3096PF05598 (PF01609)
232721.Ajs_0041(PF13358) PF13565
232721.Ajs_3766PF05598 (PF01609)
232721.Ajs_3367PF05598 (PF01609)
232721.Ajs_2613(PF13358) PF13565
232721.Ajs_1230PF05598 (PF01609)
232721.Ajs_3426PF05598 (PF01609)
232721.Ajs_3395PF05598 (PF01609)
232721.Ajs_1226(PF01610)(ER)
232721.Ajs_1916PF05598 (PF01609)
232721.Ajs_0089PF05598 (PF01609)
232721.Ajs_3410PF05598 (PF01609)
232721.Ajs_3184PF05598 (PF01609)
232721.Ajs_1216(PF01695)(plastid)
232721.Ajs_1459PF05598 (PF01609)
232721.Ajs_3403(PF02371)
232721.Ajs_3990(PF02201)
232721.Ajs_1533(PF10502)
232721.Ajs_0646(PF01176)
232721.Ajs_1479(PF02308)
232721.Ajs_1149(PF02371)
232721.Ajs_1467(PF00403)
232721.Ajs_1082(PF00403)
232721.Ajs_3019(PF04326)
232721.Ajs_2506(PF02308)
232721.Ajs_2696(PF00403)
232721.Ajs_4157(PF12762)
232721.Ajs_0907(PF00665)
232721.Ajs_3227(PF10996)
232721.Ajs_2648(PF00665)
232721.Ajs_2443(PF00665)
232721.Ajs_2444(PF01695)
232721.Ajs_1242(PF00403)
232721.Ajs_1335(PF00403)
232721.Ajs_2526(PF04326)
232721.Ajs_2528(PF10544)
232721.Ajs_1508(PF10996)
232721.Ajs_2982(PF02371)
232721.Ajs_1298(PF00403)
232721.Ajs_1342(PF00665)
232721.Ajs_1341(PF01695)
232721.Ajs_1346(PF00665)
232721.Ajs_4042(PF02371)
232721.Ajs_4041(PF02371)
232721.Ajs_1964(PF12762)
232721.Ajs_2731(PF13358)
232721.Ajs_1423(PF02371)
232721.Ajs_1429(PF01610)
232721.Ajs_2428(PF06733)
232721.Ajs_2427(PF11523)
232721.Ajs_1513(PF00403)
232721.Ajs_3474(PF00403)
232721.Ajs_1976(PF02371)
232721.Ajs_3051(PF01695)
232721.Ajs_2430(PF12762)
232721.Ajs_2894(PF02371)
232721.Ajs_1368(PF00403)
232721.Ajs_0018(PF00403)
232721.Ajs_0019(PF00403)
232721.Ajs_1944(PF02371)
232721.Ajs_3604(PF04326)
232721.Ajs_3608(PF04326)
232721.Ajs_3048(PF10544)
232721.Ajs_0836(PF00665)
232721.Ajs_0835(PF01695)
232721.Ajs_0830(PF01695)
232721.Ajs_0831(PF00665)
232721.Ajs_2157(PF00665)
232721.Ajs_1372(PF00403)
232721.Ajs_2147(PF02371)
232721.Ajs_1492(PF00403)
232721.Ajs_2708PF05598
232721.Ajs_2707(PF02308)
232721.Ajs_2961(PF01176)
232721.Ajs_3441(PF02371)
232721.Ajs_3710(PF02308)
232721.Ajs_2658(PF10502)
232721.Ajs_2171(PF00665)
232721.Ajs_0739(PF00665)
232721.Ajs_0738(PF01695)
232721.Ajs_1739(PF02371)
232721.Ajs_1735(PF02371)
232721.Ajs_0198(PF10544)
232721.Ajs_3099(PF00665)
232721.Ajs_3098(PF01695)
232721.Ajs_3386(PF01610)
232721.Ajs_1238(PF00665)
232721.Ajs_0326(PF02371)
232721.Ajs_0187(PF05704)
232721.Ajs_1905(PF02239)
232721.Ajs_3378(PF02371)
232721.Ajs_3374(PF02371)
232721.Ajs_3377(PF02371)
232721.Ajs_3370(PF02371)
232721.Ajs_3086(PF00665)
232721.Ajs_3085(PF01695)
232721.Ajs_1225(PF02371)
232721.Ajs_1222(PF00665)
232721.Ajs_1670(PF01176)
232721.Ajs_2804(PF12762)
232721.Ajs_2101(PF01610)
232721.Ajs_2106(PF02308)
232721.Ajs_2929(PF10502)
232721.Ajs_1215(PF01695)
232721.Ajs_1214(PF00665)
232721.Ajs_2923(PF02371)

Detailed merged results for each protein sequence

Individual results for each protein sequence

Genome based results

Summary

  • Gram negative: YES (FDR = 0.5 %)
  • Functional Type III secretion system: NO (FDR = 12.5 %)
  • Functional Type IV secretion system: NO (FDR = 7.2 %)
  • Functional Type VI secretion system: NO (FDR = 7.7 %)

Individual results for each secretion system

Parameters:

==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================