Metamenu

Effective results for Synechococcus sp. RS9916 (eggnog40)

Summary

Number of putative secreted proteins: 143
- Predicted by T4SEpre: 0
- Predicted by EffectiveELD: 103 eukaryotic-like domains, contained in 143 proteins (8 high, 135 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): None

Protein based results

Putative secreted proteins (weak evidence indicated by parentheses)

ProteinEffectiveT3EffectiveCCBDT4SEpreEffectiveELDPredotar
221359.RS9916_32572(PF06742) (PF06863)(ER)
221359.RS9916_32562(PF06742) (PF06863)(mitochondrial); plastid
221359.RS9916_32567(PF06742) (PF06863)mitochondrial; (mitochondrial)
221359.RS9916_28529(PF06742) (PF06863)ER
221359.RS9916_32557(PF06742) (PF06863)(ER); (mitochondrial)
221359.RS9916_31322(PF01789)ER
221359.RS9916_36852(PF01947)(ER)
221359.RS9916_27099(PF13326)ER
221359.RS9916_35187(PF07444)ER
221359.RS9916_35567(PF06514)ER
221359.RS9916_39086(PF13301)ER
221359.RS9916_37447(PF16166)ER
221359.RS9916_39956(PF10999)(mitochondrial); (plastid)
221359.RS9916_34572(PF11805)ER; (ER)
221359.RS9916_39306(PF07444)ER
221359.RS9916_26329(PF13355)(mitochondrial); mitochondrial
221359.RS9916_37957(PF04481)mitochondrial
221359.RS9916_38072(PF00140)(mitochondrial); plastid
221359.RS9916_40266(PF06206)(mitochondrial)
221359.RS9916_40071(PF12046)ER
221359.RS9916_33417(PF02507)ER
221359.RS9916_29789(PF10693)(ER); ER
221359.RS9916_29784(PF12159)(ER)
221359.RS9916_27584(PF10716)ER
221359.RS9916_27589(PF11460)ER
221359.RS9916_39461(PF01716)ER
221359.RS9916_25719(PF13301)(ER); ER
221359.RS9916_26179PF11371ER
221359.RS9916_37992(PF01737)ER
221359.RS9916_30164(PF03040)mitochondrial; (mitochondrial)
221359.RS9916_32592(PF13301)ER
221359.RS9916_39921(PF11909)(mitochondrial)
221359.RS9916_33457(PF16639) (PF01333)(plastid)
221359.RS9916_29509(PF12452)(ER)
221359.RS9916_30149(PF11152)ER
221359.RS9916_26709(PF07444)ER
221359.RS9916_35897PF11371ER
221359.RS9916_27064(PF11016)(ER)
221359.RS9916_35182(PF06596)ER; not used
221359.RS9916_34807(PF00504)(mitochondrial); not used
221359.RS9916_30214(PF04483)(mitochondrial)
221359.RS9916_39181(PF02468)ER; not used
221359.RS9916_28524(PF06742) (PF06863)
221359.RS9916_31672(PF02529)(ER); not used
221359.RS9916_32072(PF08041)ER; not used
221359.RS9916_38836(PF00284) (PF00283)
221359.RS9916_38831(PF00283)(ER); not used
221359.RS9916_31132(PF06298)ER; not used
221359.RS9916_34892(PF11998)(mitochondrial)
221359.RS9916_28749(PF07082)(mitochondrial)
221359.RS9916_39166(PF12600)(mitochondrial)
221359.RS9916_32822(PF06742) (PF06863)
221359.RS9916_29714PF03742not used
221359.RS9916_40386(PF01405)not used
221359.RS9916_26484(PF00504)
221359.RS9916_39171(PF02532)not used
221359.RS9916_25624(PF02427)
221359.RS9916_32947(PF00940)
221359.RS9916_27644(PF00140)
221359.RS9916_35887(PF10664)
221359.RS9916_34117(PF11317)
221359.RS9916_40156(PF05996)
221359.RS9916_38307(PF11623)
221359.RS9916_34747(PF11341)
221359.RS9916_31422(PF00140)
221359.RS9916_30064(PF09996)
221359.RS9916_39556(PF09996)
221359.RS9916_30449(PF12049)
221359.RS9916_29119(PF11347)
221359.RS9916_40316(PF06206)
221359.RS9916_35642(PF05421)
221359.RS9916_34917(PF00124)
221359.RS9916_39091(PF09366)
221359.RS9916_40481(PF12899)
221359.RS9916_39526(PF00124)
221359.RS9916_40136(PF06206)
221359.RS9916_28404(PF14159)
221359.RS9916_27899(PF00124)
221359.RS9916_35292(PF02943)
221359.RS9916_28084(PF00504)
221359.RS9916_33007(PF00140)
221359.RS9916_38921PF00648
221359.RS9916_30264(PF11210)
221359.RS9916_30464(PF11833)
221359.RS9916_33017(PF13355)
221359.RS9916_29139(PF05996)
221359.RS9916_35627(PF12095)
221359.RS9916_38911PF00648
221359.RS9916_38916PF00648
221359.RS9916_39186(PF00737)
221359.RS9916_39506(PF00124)
221359.RS9916_37057(PF00140)
221359.RS9916_34812(PF04983)
221359.RS9916_34817(PF04983)
221359.RS9916_34962(PF10063)
221359.RS9916_39981(PF14159)
221359.RS9916_28049(PF08417)
221359.RS9916_29484(PF12527)
221359.RS9916_39426(PF04483)
221359.RS9916_39606(PF09366)
221359.RS9916_39046(PF02533)not used
221359.RS9916_26539(PF00504)not used
221359.RS9916_35772(PF00124)
221359.RS9916_40041(PF02531)
221359.RS9916_28034(PF13911)
221359.RS9916_30812(PF06799)
221359.RS9916_39701(PF00223)
221359.RS9916_39706(PF00223)
221359.RS9916_28844(PF11947)
221359.RS9916_33422(PF01701)not used
221359.RS9916_27859(PF08854)
221359.RS9916_25739(PF08853)
221359.RS9916_35712(PF11910)
221359.RS9916_32097(PF02392)
221359.RS9916_32077PF02005
221359.RS9916_34442(PF02941)
221359.RS9916_38821(PF01788)
221359.RS9916_38826PF02419not used
221359.RS9916_40406(PF05151)not used
221359.RS9916_27344(PF08847)
221359.RS9916_39726(PF00796)not used
221359.RS9916_39721(PF02605)
221359.RS9916_39126(PF11378)
221359.RS9916_29974(PF09353)
221359.RS9916_34187(PF08855)
221359.RS9916_31002(PF01744)
221359.RS9916_31222(PF10674)
221359.RS9916_31647(PF14159)
221359.RS9916_37377(PF00140)
221359.RS9916_28969(PF11282)
221359.RS9916_35202(PF00504)
221359.RS9916_39926(PF12617)
221359.RS9916_34502(PF04839)
221359.RS9916_40161(PF05996)
221359.RS9916_32102(PF00124)
221359.RS9916_27044(PF00140)
221359.RS9916_38991(PF03492)
221359.RS9916_29724(PF11264)
221359.RS9916_39561(PF00124)
221359.RS9916_26494(PF12204)
221359.RS9916_27944(PF00504)
221359.RS9916_33447(PF11267)
221359.RS9916_29889(PF11360)

Detailed merged results for each protein sequence

Individual results for each protein sequence

Genome based results

Summary

  • Gram negative: YES (FDR = 0.5 %)
  • Functional Type III secretion system: NO (FDR = 12.5 %)
  • Functional Type IV secretion system: NO (FDR = 7.2 %)
  • Functional Type VI secretion system: NO (FDR = 7.7 %)

Individual results for each secretion system

Parameters:

==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================