Effective results for Shigella flexneri 2a str. 301 (eggnog40)

Summary

Number of putative secreted proteins: 1139
- Predicted by EffectiveT3: 254 (high confidence), 301 (low confidence)
- Predicted by EffectiveCCBD: 35 within, 24 before, 35 behind expected region 25..70aa
- Predicted by T4SEpre: 90
- Predicted by EffectiveELD: 19 eukaryotic-like domains, contained in 500 proteins (414 high, 86 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): Type III, (Type IV)

Protein based results

Putative secreted proteins (weak evidence indicated by parentheses)

Protein	EffectiveT3	EffectiveCCBD	T4SEpre	EffectiveELD	Predotar
198214.CP0117				PF13276 PF00665	(mitochondrial); mitochondrial
198214.SF0189		+			ER
198214.SF0184				(PF05708)	ER
198214.SF0673				PF01527	ER
198214.SF0678				PF00665	(mitochondrial); plastid
198214.SF2048				PF00665	(mitochondrial); plastid
198214.SF3512				PF01527	(ER)
198214.SF3202				(PF03222)	(ER); ER
198214.SF2827		+			ER
198214.SF1023				PF13276 PF00665	(mitochondrial)
198214.CP0056				PF00665	(mitochondrial)
198214.SF0862				PF00665	(mitochondrial); plastid
198214.SF1200				(PF01204)	ER
198214.SF0245				PF01527	(ER)
198214.SF4185				PF01527	(ER)
198214.SF4344	+				mitochondrial; (mitochondrial)
198214.SF3233			+		ER
198214.SF1907				PF00665	(mitochondrial); plastid
198214.SF1052				PF00665	(mitochondrial); plastid
198214.SF1054				PF01527	(ER)
198214.SF1057				PF00665	(mitochondrial)
198214.SF2011				PF01527	(ER)
198214.SF0476				PF00665	(mitochondrial)
198214.SF1872				(PF05708)	ER
198214.SF3753				(PF03222)	(ER)
198214.CP0189				PF00665	(mitochondrial)
198214.CP0184				PF00665	(mitochondrial)
198214.SF1768				PF01527	(ER)
198214.SF1049				PF00665	(mitochondrial)
198214.SF2069				PF00665	mitochondrial
198214.SF1463				PF01527	(ER)
198214.SF0319				PF00665	(mitochondrial)
198214.SF2065				PF00665	(mitochondrial)
198214.SF0228				PF00665	(mitochondrial)
198214.SF4097				PF01527	ER
198214.CP0004			+		ER
198214.SF1075		(>)			mitochondrial
198214.CP0081				PF00665	(mitochondrial)
198214.CP0087				PF00665	(mitochondrial)
198214.SF2478		+			ER
198214.CP0232				PF00665	(mitochondrial)
198214.SF0300				PF00665	(mitochondrial)
198214.SF0308				(PF01609)	mitochondrial; (mitochondrial)
198214.SF1091			+		(mitochondrial); (plastid)
198214.SF0236		(>)			ER
198214.SF4223				PF00665	(mitochondrial); plastid
198214.SF2313				PF01527	ER; mitochondrial
198214.SF0516				PF00665	(mitochondrial); plastid
198214.SF3805				PF01527	(ER)
198214.SF0933				PF01527	(ER)
198214.SF2684				PF13276 PF00665	(mitochondrial)
198214.SF0683				PF00665	(mitochondrial); plastid
198214.SF0209				PF01527	(ER)
198214.CP0067				PF00665	(mitochondrial)
198214.SF2306				PF00665	(mitochondrial); plastid
198214.SF2873				PF01527	(ER)
198214.SF3275		(>)			ER
198214.SF2058			+		ER
198214.SF3873				PF01527	(ER)
198214.SF2694				PF01527	(ER)
198214.CP0172				PF00665	(mitochondrial)
198214.SF1343				PF01527	(ER)
198214.SF0699			+		(ER)
198214.SF3642	+				(ER)
198214.SF3465			+		ER
198214.SF3462			+		mitochondrial; (mitochondrial)
198214.SF2842		(<)			(ER)
198214.SF3006				PF13276 PF00665	(mitochondrial)
198214.SF3260	+				(mitochondrial)
198214.SF1422		+			ER
198214.SF0434			+		ER
198214.CP0165				PF13276	mitochondrial; (mitochondrial)
198214.SF0598		(>)			ER
198214.SF2031	+				(ER)
198214.SF3676	+				(mitochondrial)
198214.SF2984				PF01527	ER
198214.SF2857				PF13276 PF00665	(mitochondrial)
198214.SF3075			+		ER
198214.SF2212				PF00665	(mitochondrial)
198214.SF1165				PF01527	(ER)
198214.SF1167				PF13276 PF00665	(mitochondrial)
198214.SF0168		(>)			ER
198214.CP0124		+			ER
198214.SF1625			+		ER
198214.SF2538			+		ER
198214.CP0106				PF01527	(ER)
198214.CP0039				PF00665	(mitochondrial)
198214.CP0030	(+)			PF03400	mitochondrial
198214.SF1370				PF00665	(mitochondrial)
198214.SF0480				PF01527	(ER)
198214.SF0398		(>)			ER
198214.SF4015				(PF05708)	ER
198214.SF3614			+		ER
198214.SF1789			+		ER
198214.SF3431				PF01527	ER
198214.SF3120				(PF01204)	ER
198214.SF3722				PF01527	ER
198214.SF2237		(>)			ER
198214.SF1546			+		ER
198214.CP0009	+	+			plastid
198214.CP0007				PF13276	(mitochondrial); plastid
198214.CP0005			+		mitochondrial
198214.SF1622		+			ER
198214.SF0960				PF01527	(ER)
198214.SF0491				PF00665	(mitochondrial)
198214.SF0031		(>)			ER
198214.SF3040		(<)			(ER)
198214.SF4028				(PF01228)	(mitochondrial)
198214.SF1605				PF00665	(mitochondrial); plastid
198214.SF2552			+		ER
198214.SF3469		(>)			ER
198214.SF1800				PF00665	(mitochondrial); plastid
198214.SF0557			+		ER
198214.SF0958	+				(mitochondrial)
198214.SF1396		(>)			ER
198214.SF1159				(PF13436)	(ER)
198214.SF2602			+		(ER)
198214.SF4254			+		ER
198214.SF3705				PF00665	(mitochondrial)
198214.SF3709				PF01527	ER
198214.SF0879				PF01527	(ER)
198214.SF1841			+		ER
198214.SF1838				PF00665	(mitochondrial); plastid
198214.SF2615				PF01527	(ER)
198214.SF0831				PF01527	(ER)
198214.SF2262			+		(ER); ER
198214.SF0050		(<)			ER
198214.SF4285				PF13276 PF00665	plastid
198214.SF3711		+			(mitochondrial)
198214.SF3083				PF01527	(ER)
198214.SF2972				(PF03050)	(ER)
198214.SF4330			+		ER
198214.SF1953				(PF03222)	ER; (ER)
198214.SF1006				(PF00328)	ER
198214.SF2025				PF13276 PF00665	plastid
198214.CP0075				PF13384	(mitochondrial); (plastid)
198214.SF1131			+		(mitochondrial)
198214.SF0190	+				mitochondrial
198214.SF2427				PF00665	(mitochondrial); plastid
198214.CP0269				PF00665	(mitochondrial); plastid
198214.SF3915			+		ER
198214.SF3215			+		ER
198214.SF3185				PF01527	(ER)
198214.SF1722		(>)			(ER)
198214.SF3988				PF01527	ER
198214.SF1925				PF00665	(mitochondrial); plastid
198214.SF1580				PF01527	(mitochondrial)
198214.SF1587				PF01527	(ER)
198214.SF0982				(PF00328)	ER
198214.SF0672				PF13276 PF00665
198214.SF0076	+				(plastid)
198214.SF0940	+				(plastid)
198214.SF4194	+				(plastid)
198214.SF4359	(+)			PF13276 PF00665
198214.SF3374	+	(>)
198214.SF1251	(+)	+	+
198214.SF3773		+			(plastid)
198214.SF3513				PF13276 PF00665
198214.SF3516	(+)			PF13276 PF00665
198214.SF3432				PF13276 PF00665
198214.SF3173	+				(plastid)
198214.SF1732	+				(plastid)
198214.SF3998	(+)				ER
198214.SF1938			+		(mitochondrial)
198214.SF1847	(+)			PF13276 PF00665
198214.SF2007	(+)			PF13276 PF00665
198214.SF1440	(+)			PF13276 PF00665
198214.SF2640	(+)				ER
198214.SF0866	(+)			PF13276 PF00665
198214.SF0884	(+)			PF13276 PF00665
198214.CP0207				PF13276 PF00665
198214.SF0882	(+)			PF13276 PF00665
198214.SF2681	+				(plastid)
198214.SF3549	+				(plastid)
198214.SF0241	(+)			PF13276 PF00665
198214.SF0240	(+)			PF13276 PF00665
198214.SF0246	+				(plastid)
198214.SF0244				PF13276 PF00665
198214.SF4184				PF01527 PF13384
198214.SF4186				PF13276 PF00665
198214.SF4347	+		+
198214.SF4342	+				(plastid)
198214.SF1966	+				plastid
198214.SF3742				PF13384 PF01527
198214.SF2348	+				(plastid)
198214.SF3533	+				(plastid)
198214.SF1901	(+)			PF13276 PF00665
198214.SF1055				PF13276 PF00665
198214.SF2010				PF13276 PF00665
198214.SF2012	+				(plastid)
198214.SF3831	+				(plastid)
198214.SF0479				PF13276 PF00665
198214.SF1475	(+)				mitochondrial
198214.SF0878				PF13276 PF00665
198214.SF0895	(+)			PF13276 PF00665
198214.SF0255	+				(plastid)
198214.SF2633	(+)				ER
198214.SF4372			+		(ER)
198214.SF4155	(+)				mitochondrial
198214.SF3750	(+)			PF13276 PF00665
198214.SF3756	+				(plastid)
198214.SF2930	+				(plastid)
198214.SF2791	+				(plastid)
198214.SF1686	+				(mitochondrial)
198214.SF1464				PF13276 PF00665
198214.SF2463	+				plastid
198214.SF0317	(+)			PF13276 PF00665
198214.CP0223		(<)		(PF03050)
198214.SF2062	(+)			PF13276 PF00665
198214.SF0791	(+)			PF13276 PF00665
198214.SF4367	+				(plastid)
198214.SF4360	(+)			PF13276 PF00665
198214.SF4147	(+)	+			(plastid)
198214.SF4096				PF13276 PF00665
198214.SF3036	+				(mitochondrial)
198214.SF2923	+				(plastid)
198214.SF3329			+		(mitochondrial)
198214.SF3322				PF01527 PF13384
198214.SF3256	(+)			PF13276 PF00665
198214.SF2257	+				(plastid)
198214.SF3813		(<)	+
198214.CP0157				PF13276 PF00665
198214.SF0312	(+)			PF13276 PF00665
198214.SF0303	(+)			PF13276 PF00665
198214.SF1253				PF13276 PF00665
198214.SF4310		+			(mitochondrial)
198214.SF4316	+				(plastid)
198214.SF4423		(>)			(mitochondrial)
198214.SF4041	+				(plastid)
198214.SF1818	+				(plastid)
198214.SF2314				PF13276 PF00665
198214.SF3307	+				(plastid)
198214.SF3305	(+)				(ER)
198214.SF1665				PF13276 PF00665
198214.SF3806				PF13276 PF00665
198214.SF3802	(+)			PF13276 PF00665
198214.SF0932				PF13276 PF00665
198214.SF0938	+				(plastid)
198214.SF1407	+				(plastid)
198214.SF1791	(+)			PF13276 PF00665
198214.SF1799				PF01527	(mitochondrial)
198214.SF0680	(+)			PF13276 PF00665
198214.SF0684				(PF01695)	(mitochondrial)
198214.SF1243	+				(plastid)
198214.SF1339	(+)			PF13276 PF00665
198214.SF4300	+				(plastid)
198214.SF4120	+				(plastid)
198214.CP0126	+				(plastid)
198214.SF4236	+				(plastid)
198214.SF3013	+				(plastid)
198214.SF3011	+				(plastid)
198214.SF3655	+				(plastid)
198214.SF3658	(+)	+		PF09612
198214.SF3309	(+)				(mitochondrial); mitochondrial
198214.SF2872				PF13276 PF00665
198214.SF2871	+				(plastid)
198214.SF2052	(+)			PF13276 PF00665
198214.SF3872				PF13276 PF00665
198214.SF1315	+				(plastid)
198214.SF2697			+		(mitochondrial)
198214.SF2693				PF13276 PF00665
198214.SF1500	+				(plastid)
198214.SF1857	+				plastid
198214.SF3640	+				(mitochondrial)
198214.SF0210				PF13276 PF00665
198214.SF1342				PF13276 PF00665
198214.SF0697	(+)			PF13276 PF00665
198214.CP0206				PF13384 PF01527
198214.SF4204	+				(plastid)
198214.SF2208	+				(plastid)
198214.SF1643	+				(plastid)
198214.SF3869	+				(ER)
198214.SF2195	+				(plastid)
198214.SF1429	(+)			PF13276 PF00665
198214.SF2428				PF01527	(mitochondrial)
198214.SF3735	+				(plastid)
198214.SF0596	+				(plastid)
198214.SF1002	+				(plastid)
198214.SF2757	(+)			PF13276 PF00665
198214.SF1352	+				(plastid)
198214.SF1357	(+)			PF13276 PF00665
198214.SF4329	+		+
198214.SF4218	(+)			PF13276 PF00665
198214.SF4215	+				(plastid)
198214.SF4213	+		+
198214.SF3671	+				(plastid)
198214.SF2985				PF13276 PF00665
198214.SF3581	(+)				(ER)
198214.SF2182	(+)			PF13276 PF00665
198214.SF2183	+				(plastid)
198214.SF1745	+				(plastid)
198214.CP0114				PF13384 PF01527
198214.CP0026				PF00665	(plastid)
198214.SF0763	(+)				(mitochondrial)
198214.SF1164				PF13276 PF00665
198214.SF2793	+				(plastid)
198214.SF4048	(+)				mitochondrial
198214.SF0019	+				(plastid)
198214.SF3590				PF13276 PF00665
198214.SF2078	+				(plastid)
198214.SF3286		+			(mitochondrial)
198214.SF3540		+			(plastid)
198214.SF2530	+				(plastid)
198214.SF2798	(+)				(mitochondrial)
198214.SF1197	+				(plastid)
198214.SF1754	+				(plastid)
198214.SF2153	+				(plastid)
198214.CP0107	(+)			PF13276 PF00665
198214.CP0105				PF13276 PF00665
198214.SF1285	+				(plastid)
198214.SF1579				PF13276 PF00665
198214.SF1378				PF13276 PF00665
198214.SF4336	+				(plastid)
198214.SF3725	+				(plastid)
198214.SF3726	+		+
198214.SF3721				PF13276 PF00665
198214.SF3962	+				(plastid)
198214.SF1767				PF13276 PF00665
198214.SF3945	+				(plastid)
198214.SF1542	(+)			PF13276 PF00665
198214.SF1540	+				(plastid)
198214.CP0008	(+)			PF13276 PF00665
198214.SF0961				PF13276 PF00665
198214.SF1387	(+)			PF13276 PF00665
198214.SF1381				PF01527 PF13384
198214.SF0490	(+)			PF13276 PF00665
198214.SF0494				PF13276 PF00665
198214.SF0499	+				(plastid)
198214.SF4396	+				(plastid)
198214.SF3600	+				(plastid)
198214.SF3605		(<)
198214.CP0094	+	+
198214.SF1059	(+)			PF13276 PF00665
198214.SF2951	+				(plastid)
198214.SF3135	+				(plastid)
198214.SF1975	+				(mitochondrial)
198214.SF2392	+				(mitochondrial)
198214.SF2391	(+)				(mitochondrial)
198214.CP0129	+			(PF07720)
198214.CP0121				PF00665	(plastid)
198214.SF2177	+				(plastid)
198214.SF1559	(+)			PF13276 PF00665
198214.SF0820	+	(>)
198214.SF1550				PF13276 PF00665
198214.SF1805	(+)			PF13276 PF00665
198214.SF1801				PF13276 PF00665
198214.CP0013	(+)			PF03400	(plastid)
198214.SF1038	(+)			PF13276 PF00665
198214.SF0013	(+)				ER
198214.SF0376				PF01527 PF13384
198214.SF3638	+				(plastid)
198214.SF3708				PF13276 PF00665
198214.SF3567	+				(plastid)
198214.SF2548	(+)			PF13276 PF00665
198214.SF1945	+				(plastid)
198214.SF1839				PF01527	(mitochondrial)
198214.SF0544	+				(mitochondrial)
198214.CP0063		+	+
198214.CP0022	+	+
198214.SF1493	+				(plastid)
198214.SF2616				PF13276 PF00665
198214.SF0834	+				(plastid)
198214.SF0830				PF13276 PF00665
198214.CP0254	(+)			PF13276 PF00665
198214.SF3983		(<)			(plastid)
198214.SF4287	+				(plastid)
198214.SF3620	+				(plastid)
198214.SF3624	+				(plastid)
198214.SF3570	+				(ER)
198214.SF3084				PF13276 PF00665
198214.SF3085	+				(plastid)
198214.SF0465	+				(plastid)
198214.SF3156	+			(PF03222)
198214.SF3881	+				(plastid)
198214.SF2417	+				(plastid)
198214.SF2118	+				(plastid)
198214.SF3973	+				(plastid)
198214.SF1758	+				(plastid)
198214.SF1589	(+)			PF13276 PF00665
198214.SF0537		(>)			plastid
198214.SF1005	+		+
198214.CP0211				PF13384 PF01527
198214.SF1480	(+)				(mitochondrial)
198214.SF0448	+				(plastid)
198214.SF2621				PF13276 PF00665
198214.SF0664	(+)			PF13276 PF00665
198214.CP0265	+		+
198214.SF1941	+				(plastid)
198214.SF0261	+				(plastid)
198214.SF0263	+				(mitochondrial)
198214.SF2969	+				(mitochondrial)
198214.SF2962		(>)			(ER)
198214.SF3146		(>)			(mitochondrial)
198214.SF1511	+				(plastid)
198214.SF1366	+				(plastid)
198214.SF3180	+				(plastid)
198214.SF1725	+				(plastid)
198214.SF3987				PF13276 PF00665
198214.SF2291	+	+
198214.SF1928	(+)			PF13276 PF00665
198214.SF0520	(+)			PF13276 PF00665
198214.SF1588				PF13276 PF00665
198214.SF2037				PF01527 PF13384
198214.SF2033	(+)			PF13276 PF00665
198214.SF1535	+				(plastid)
198214.SF0290	+				(plastid)
198214.SF0295	(+)			PF13276 PF00665
198214.SF0858				PF01527 PF13384
198214.SF0677				PF01527
198214.SF0191			+
198214.SF0074	+				not used
198214.SF0077				PF03400
198214.SF4195	+
198214.SF4193				PF03400
198214.SF2049				PF01527
198214.SF4358				PF01527
198214.CP0092			+
198214.CP0093	+
198214.SF3511	+
198214.SF3515				PF01527
198214.SF3518				PF03400
198214.SF3170	+
198214.SF3174				PF03400
198214.SF3179				PF03400
198214.SF3195	(+)				(mitochondrial)
198214.SF3192	+
198214.SF2825	+
198214.SF1730				PF03400
198214.SF1733				PF03400
198214.SF1933	(+)				plastid
198214.SF0517				PF01527
198214.SF1843				PF01527
198214.SF0515	+
198214.SF1846				PF01527
198214.SF1844				PF00665
198214.SF1024				PF01527
198214.SF2768		(>)
198214.SF0519				PF01527
198214.CP0058				PF01527
198214.CP0059		(>)
198214.SF2008				PF01527
198214.CP0051				PF03400
198214.CP0055				PF01527
198214.SF2709	+
198214.SF0464				PF03400
198214.SF1111			+
198214.SF0422			+
198214.SF2641				(PF01228)
198214.SF0865				PF01527
198214.SF0863				PF01527
198214.SF0860				(PF03050)
198214.SF1590				PF01527
198214.SF3051		(>)
198214.CP0208				PF01527
198214.SF0888	+
198214.SF0885				PF01527
198214.SF0881				PF01527
198214.CP0204				(PF03050)
198214.SF1202	+
198214.SF2683	(+)			PF01527
198214.SF0249		(>)
198214.SF0242				PF01527
198214.SF0247				PF03400
198214.SF0047	+
198214.CP0065				PF03400
198214.SF4182				(PF03050)
198214.SF4340	+
198214.SF4341				PF03400
198214.SF3694	+
198214.CP0142	+
198214.SF4163		+
198214.SF3740				(PF03050)
198214.SF3749				PF01527
198214.SF2349				PF03400
198214.SF3522				PF03400
198214.CP0199		(<)
198214.CP0194			+
198214.SF3532				PF03400
198214.SF1905	+
198214.SF1902				PF03400
198214.SF1900				PF01527
198214.SF1908				PF01527
198214.SF0500				PF03400
198214.SF1058				PF01527
198214.SF1051				PF01527
198214.SF1053	+
198214.SF1056				PF01527
198214.SF3832				PF03400
198214.SF0477				PF01527
198214.SF1968	(+)	+
198214.SF1471				(PF01609)
198214.SF2651				(PF01609)
198214.SF2656				(PF01609)
198214.SF2659			+
198214.SF0898				(PF01228)
198214.SF0896				PF01527
198214.CP0213				(PF03050)
198214.CP0214				(PF01695)
198214.SF0096		(<)
198214.SF0090	+
198214.SF2109		(>)
198214.SF0098	+
198214.SF0254				PF03400
198214.SF1302		(<)
198214.SF4157		+
198214.SF4156	+
198214.SF3504	+
198214.SF3757				PF03400
198214.SF3223			+
198214.SF2792				PF03400
198214.SF2063				PF01527
198214.SF2802	+
198214.SF2809				(PF01609)
198214.SF3536	+
198214.SF3537				PF03400
198214.CP0182	+
198214.CP0183				PF01527
198214.CP0180				PF01527
198214.CP0181	+
198214.SF2243	+
198214.SF1919				PF00665
198214.SF2064				PF01527
198214.SF1687			+
198214.SF3827				(PF01609)
198214.SF2666	(+)	+
198214.SF2468	(+)				(mitochondrial)
198214.SF1867	(+)				(plastid)
198214.CP0226	+
198214.CP0222	(+)			(PF03050)
198214.SF0313				PF01527
198214.CP0220				PF03400
198214.SF0318				PF01527
198214.SF1262	+
198214.SF0790				PF01527
198214.CP0137	+
198214.SF0227				PF01527
198214.SF1812				PF03400
198214.SF4361				PF01527
198214.SF0133				PF03400
198214.SF4363	+
198214.SF4144				PF03400
198214.SF4412	+
198214.SF2668			+
198214.SF4148	(+)				(mitochondrial)
198214.SF3035				(PF03738)
198214.SF3031	+
198214.SF2922				PF03400
198214.SF2929				PF03400
198214.CP0002	+
198214.SF3325				PF13384
198214.SF3324				(PF03050)
198214.SF3255				PF01527
198214.SF2819			+
198214.SF2815	+
198214.SF2810	+
198214.SF0998		(>)
198214.SF2492		(>)
198214.SF2256				PF03400
198214.SF1077	+
198214.SF2789				PF03400
198214.SF2073	(+)				(ER)
198214.CP0080				PF01527
198214.SF2077				PF03400
198214.CP0085				(PF01695)
198214.CP0084				(PF01609)
198214.CP0089				(PF01695)
198214.CP0088				PF01527
198214.SF0414	+
198214.CP0158				PF01527
198214.CP0150			+
198214.SF1892	+
198214.SF2480		(>)
198214.CP0231				PF01527
198214.SF0302				PF01527
198214.SF0301				PF01527
198214.SF1252				PF01527
198214.SF1092			+
198214.SF4315				PF03400
198214.SF3851		(>)
198214.SF4221				PF03400
198214.SF4222				PF01527
198214.SF4047		(>)
198214.SF4042				PF03400
198214.SF3244	+
198214.SF2860	+
198214.SF2862				PF01527
198214.SF2864				PF00665
198214.SF1840		+
198214.SF2268	(+)				(mitochondrial)
198214.SF3654				PF03400
198214.SF2047			+
198214.CP0091				(PF01609)
198214.SF1666				PF01527
198214.SF3801				PF01527
198214.SF3808				(PF01609)
198214.SF2162				(PF01609)
198214.SF0939				PF03400
198214.SF1406				PF03400
198214.SF2682				PF03400
198214.SF1409	+
198214.SF1792				PF01527
198214.CP0054	+
198214.SF2441	+
198214.SF2444	(+)				(mitochondrial)
198214.SF1880	+
198214.SF1889		(<)
198214.SF0681				PF01527
198214.SF0685				PF01527
198214.SF0688	+
198214.SF1249	+
198214.SF1536				PF03400
198214.SF1242				PF03400
198214.CP0116				PF01527
198214.SF1082	+
198214.SF1080	+
198214.SF0755				(PF01609)
198214.SF0200	+
198214.SF1337	+
198214.SF1330	+
198214.SF4301				PF03400
198214.SF4126	+
198214.SF4124	+
198214.SF4237				PF03400
198214.SF3012				PF03400
198214.SF3010				PF03400
198214.SF4050	+
198214.SF4368				PF03400
198214.SF3306				PF03400
198214.SF3302				PF03400
198214.SF2301			+
198214.SF2305	+
198214.SF2307				PF01527
198214.SF1294			+
198214.SF2870	+
198214.SF2275	(+)				(ER)
198214.CP0111	+				not used
198214.SF2051				PF01527
198214.SF2056			+
198214.SF1439				PF01527
198214.SF0921				(PF01609)
198214.CP0179				PF13276
198214.CP0171				PF01527
198214.SF0327	+
198214.SF0320				PF01527
198214.SF0218		(<)
198214.SF0212	(+)			PF00665
198214.SF0214				PF01527
198214.SF1340				PF01527
198214.SF1344				(PF01695)
198214.SF3272	+
198214.SF0694				PF00665
198214.SF0696				PF01527
198214.SF0693				PF01527
198214.SF4337				PF03400
198214.SF0106			+
198214.SF4339				(PF03738)
198214.SF4203				PF03400
198214.SF4119				PF03400
198214.SF2995	+
198214.SF2999	+
198214.SF3467				(PF01609)
198214.SF3005	(+)			PF01527
198214.SF3003				(PF01609)
198214.SF2209				PF03400
198214.SF2203				(PF01609)
198214.SF2034				PF01527
198214.SF3264				PF03400
198214.SF3266				PF03400
198214.SF1648		+
198214.SF1642				PF03400
198214.SF1824	+
198214.SF2192	(+)			PF03400
198214.SF2194				PF03400
198214.SF1428				PF01527
198214.SF0910	(+)	+
198214.CP0166	(+)			PF01527
198214.SF2422				(PF01609)
198214.SF0437	+
198214.SF1510				PF03400
198214.SF0595				PF03400
198214.SF0593	+
198214.SF0592			+
198214.SF2732	+
198214.SF4020	+
198214.SF2758	(+)			PF00665
198214.SF0773				(PF01228)
198214.SF1351				PF03400
198214.SF1356				PF01527
198214.SF2895	+
198214.SF3189	+
198214.SF4214				PF03400
198214.SF4217				PF01527
198214.SF3670				PF03400
198214.SF2983				(PF01609)
198214.SF3450				(PF01609)
198214.SF3109				(PF01609)
198214.SF2853			+
198214.SF2856	(+)			PF01527
198214.SF3078				(PF03738)
198214.SF2211				PF01527
198214.SF3299	+
198214.SF1636	(+)	(<)
198214.SF2501				PF03400
198214.SF3855	+				not used
198214.SF1608	+
198214.SF2181				PF01527
198214.SF2184				PF03400
198214.SF1180	+
198214.SF1744				PF03400
198214.CP0112				(PF03050)
198214.CP0115		+
198214.SF3920	(+)				(plastid)
198214.SF0346		(>)
198214.CP0029				(PF01695)
198214.CP0028				(PF01609)
198214.CP0025				PF00665
198214.CP0020				(PF03050)
198214.SF0904				(PF01609)
198214.SF1367				PF03400
198214.SF1166				PF01527
198214.SF0661	+
198214.SF0018				PF03400
198214.SF3665				(PF06176)
198214.SF3663		+
198214.SF3442				(PF05189)
198214.SF1228		(<)
198214.SF3592				PF03400
198214.SF3595		(>)
198214.CP0086				(PF03050)
198214.SF2221	+
198214.SF1529		+
198214.CP0125	+
198214.SF3285			+
198214.SF2084			+
198214.SF2533	+
198214.SF2534	(+)				(plastid)
198214.SF3846		+
198214.SF1195		+
198214.SF1196				PF03400
198214.SF1198				(PF01609)
198214.SF1756	+
198214.SF1753				PF03400
198214.SF1759				PF03400
198214.CP0108				PF01527
198214.SF0804				(PF01609)
198214.SF0807		+
198214.SF0374				(PF03050)
198214.SF1288	+
198214.SF0370	+
198214.SF0571	+
198214.CP0037	(+)		+
198214.SF0974	+
198214.SF1379				PF01527
198214.SF0713		(<)
198214.SF1371				PF01527
198214.SF1374				PF00665
198214.SF1375			+
198214.SF0482	+
198214.SF0484				(PF01609)
198214.SF1177			+
198214.SF1175		(<)
198214.SF3068	(+)				(mitochondrial)
198214.SF1554	+
198214.SF0157	+
198214.SF0155			+
198214.SF0399				(PF01609)
198214.CP0146			+
198214.SF0025	+
198214.SF0024	+
198214.SF2772	+
198214.SF3611			+
198214.SF3435	+
198214.SF3724				PF03400
198214.SF3548				PF03400
198214.SF2234	+
198214.SF1762		(<)
198214.CP0138	+
198214.SF2416				PF03400
198214.CP0130		+
198214.SF3946				PF03400
198214.SF1819				PF03400
198214.SF0366				PF03400
198214.SF1541				PF03400
198214.SF2702	+
198214.CP0003		(<)
198214.CP0006				(PF03050)
198214.SF1385				PF03400
198214.SF0492				PF01527
198214.SF0493				PF01527
198214.SF4383	+
198214.SF4392				(PF01695)
198214.SF4397				PF03400
198214.SF4398		+
198214.SF0034			+
198214.SF4244	+
198214.SF3601				PF03400
198214.SF3736				PF03400
198214.SF3732		(<)
198214.SF3558		(<)
198214.SF3555	+
198214.SF3550				(PF01204)
198214.SF2950				PF03400
198214.SF1050				PF01527
198214.SF3136				PF03400
198214.SF1606				PF01527
198214.SF2397	+
198214.SF1699	(+)				(plastid)
198214.SF2013				PF03400
198214.SF2173				PF03400
198214.CP0123			+
198214.SF2176				PF03400
198214.CP0127	+
198214.SF1692				(PF01609)
198214.SF2152				PF03400
198214.SF0827	+
198214.SF1551				PF01527
198214.SF1804				PF01527
198214.SF3936			+
198214.SF0552	+
198214.SF2773	+
198214.CP0017				(PF01609)
198214.CP0018				PF01527
198214.CP0019		(<)
198214.SF0950			+
198214.SF0732	+
198214.SF0731		(<)
198214.SF1394			+
198214.SF1157	+
198214.SF2605			+
198214.CP0242				PF01527
198214.SF2965			+
198214.SF4387	+
198214.CP0227	+
198214.SF0371	+
198214.SF4259				(PF01609)
198214.SF4251	+
198214.SF1383	+
198214.SF2948			+
198214.SF3637				PF03400
198214.CP0224	+
198214.SF0880	(+)				(mitochondrial)
198214.SF4038				(PF01609)
198214.SF3701				PF00665
198214.SF3706				PF01527
198214.SF3563	(+)				(plastid)
198214.SF3566				PF03400
198214.SF3090	(+)			PF03400
198214.SF1942				PF03400
198214.SF2547				PF01527
198214.SF3892				(PF01609)
198214.SF1709				(PF01609)
198214.SF1704				PF03400
198214.SF2166	+
198214.SF3961				PF03400
198214.SF1013	(+)				(ER)
198214.CP0066				PF01527
198214.CP0069				(PF01695)
198214.CP0068				(PF03050)
198214.SF1499				PF03400
198214.SF1492				PF03400
198214.SF1496	+
198214.SF2610	+
198214.SF0833				PF03400
198214.CP0255				PF01527
198214.SF1239				(PF01609)
198214.CP0250	+
198214.CP0258	+
198214.SF1600	+
198214.SF4288				PF03400
198214.SF4281	(+)				(ER)
198214.SF4284				PF03400
198214.SF3791	+
198214.SF3621				PF03400
198214.SF3625				PF03400
198214.SF1750	+
198214.SF3712				PF03400
198214.SF3574				(PF03222)
198214.SF3577	+
198214.SF3086				PF03400
198214.SF2970				(PF03050)
198214.SF2974				PF00665
198214.SF2979				PF01527
198214.SF3405			+
198214.SF2577		(>)
198214.SF3882				PF03400
198214.SF3951	+
198214.SF1719		+
198214.SF2119				PF03400
198214.SF3972				PF03400
198214.SF0627	+
198214.SF3703				PF01527
198214.SF3154				(PF01228)
198214.SF0536				PF03400
198214.SF1001				PF03400
198214.SF2756				PF01527
198214.SF2026				PF03400
198214.SF2023				(PF01609)
198214.SF2750				PF03400
198214.CP0077				PF03400
198214.CP0078	+
198214.SF0447				PF03400
198214.SF2620				PF01527
198214.SF0846	+
198214.SF2423	+
198214.SF0193				(PF01609)
198214.SF0663				PF01527
198214.CP0267				PF01527
198214.CP0268				PF01527
198214.SF0265	+
198214.SF0262				PF03400
198214.SF4291	+
198214.SF4261	+
198214.SF3363	(+)				(mitochondrial)
198214.SF3144	+
198214.SF0309		(>)
198214.SF3165			+
198214.SF3219	+
198214.SF3210		(<)
198214.SF2362	+
198214.SF3187	+
198214.SF1724				PF03400
198214.SF3989			+
198214.SF3890			+
198214.SF1921				PF01527
198214.SF1926				PF01527
198214.SF1032				(PF01609)
198214.SF1037				PF01527
198214.CP0045				(PF01695)
198214.SF2035				(PF03050)
198214.CP0041				PF00665
198214.CP0040				PF01527
198214.SF0291				PF03400
198214.SF0292		(>)
198214.SF0293		(>)
198214.SF0296				PF01527
198214.SF0457			+
198214.SF0454	(+)	(<)
198214.SF2631		(>)
198214.SF1258	(+)
198214.SF0753	(+)
198214.SF4197	(+)
198214.SF3177	(+)
198214.SF4265	(+)
198214.SF3206	(+)
198214.SF0810	(+)
198214.SF2137	(+)
198214.SF2136	(+)
198214.SF0514	(+)
198214.SF1557	(+)
198214.SF0467	(+)
198214.SF1442	(+)
198214.SF0644	(+)
198214.CP0209	(+)
198214.SF4180	(+)
198214.SF3746	(+)
198214.SF1963	(+)
198214.SF3539	(+)
198214.SF2484	(+)
198214.SF1698	(+)
198214.SF2489	(+)
198214.SF4364	(+)
198214.SF1876	(+)
198214.CP0217	(+)
198214.SF1279	(+)
198214.SF0253	(+)
198214.SF1306	(+)
198214.SF3049	(+)
198214.SF4378	(+)
198214.SF4404	(+)
198214.SF4150	(+)
198214.CP0049	(+)
198214.SF2706	(+)
198214.SF2337	(+)
198214.SF2061	(+)
198214.SF2800	(+)
198214.SF3530	(+)
198214.CP0133	(+)
198214.SF3102	(+)
198214.SF2988	(+)
198214.SF1689	(+)
198214.SF2859	(+)
198214.SF0794	(+)
198214.SF0813	(+)
198214.SF0225	(+)
198214.SF1544	(+)
198214.SF4091	(+)
198214.SF3033	(+)
198214.SF3032	(+)
198214.SF3782	(+)
198214.SF3327	(+)
198214.SF2325	(+)
198214.SF1459	(+)
198214.SF2499	(+)
198214.SF2259	(+)
198214.SF3818	(+)
198214.SF3814	(+)
198214.SF2678	(+)
198214.SF0310	(+)
198214.SF1256	(+)
198214.SF1094	(+)
198214.SF0234	(+)
198214.SF1322	(+)
198214.SF1324	(+)
198214.SF2509	(+)
198214.SF4420	(+)
198214.SF2476	(+)
198214.SF0143	(+)
198214.CP0090	(+)
198214.CP0265a	(+)
198214.SF0930	(+)
198214.SF1404	(+)
198214.SF1796	(+)
198214.SF2005	(+)
198214.SF0689	(+)
198214.SF1539	(+)
198214.SF1530	(+)
198214.SF0208	(+)
198214.SF1336	(+)
198214.SF2585	(+)
198214.SF4233	(+)
198214.SF4239	(+)
198214.SF3497	(+)
198214.SF1116	(+)
198214.SF3871	(+)
198214.SF0329	(+)
198214.SF3796	(+)
198214.SF1507	(+)
198214.SF0710	(+)
198214.SF0749	(+)
198214.SF0430	(+)
198214.SF0103	(+)
198214.SF1711	(+)
198214.SF3487	(+)
198214.SF3310	(+)
198214.SF4114	(+)
198214.SF2844	(+)
198214.SF2841	(+)
198214.SF3002	(+)
198214.SF0431	(+)
198214.SF1436	(+)				not used
198214.SF3731	(+)
198214.SF0928	(+)
198214.SF0770	(+)
198214.SF1355	(+)
198214.SF4211	(+)
198214.SF4105	(+)
198214.SF2982	(+)
198214.SF2986	(+)
198214.SF2218	(+)
198214.SF3298	(+)
198214.SF1985	(+)
198214.SF2430	(+)
198214.SF1567	(+)
198214.SF2727	(+)
198214.SF0903	(+)
198214.SF1364	(+)
198214.SF1163	(+)
198214.SF0546	(+)
198214.CP0048	(+)
198214.SF4002	(+)
198214.SF4008	(+)
198214.SF2150	(+)
198214.SF2889	(+)
198214.SF2223	(+)
198214.SF3284	(+)
198214.SF1528	(+)
198214.SF1028	(+)
198214.SF1757	(+)
198214.CP0100	(+)
198214.CP0109	(+)
198214.SF3982	(+)
198214.SF0972	(+)
198214.SF0975	(+)
198214.SF0977	(+)
198214.SF4019	(+)
198214.SF1787	(+)
198214.SF1292	(+)
198214.SF2083	(+)
198214.SF2413	(+)
198214.SF0361	(+)
198214.SF0568	(+)
198214.CP0001	(+)
198214.SF0497	(+)
198214.SF0381	(+)
198214.SF4395	(+)
198214.SF0039	(+)
198214.SF3427	(+)
198214.SF2958	(+)
198214.SF1602	(+)
198214.CP0128	(+)
198214.SF2998	(+)
198214.SF3937	(+)
198214.SF2774	(+)
198214.SF1397	(+)
198214.SF3166	(+)
198214.SF0607	(+)
198214.SF0605	(+)
198214.SF4388	(+)
198214.SF1380	+
198214.SF0809	(+)
198214.SF3635	(+)
198214.SF3639	(+)
198214.SF2657	(+)
198214.CP0032	(+)
198214.SF3969	(+)
198214.SF3960	(+)
198214.SF4247	(+)
198214.SF1011	(+)
198214.SF2764	(+)
198214.SF0877	(+)				not used
198214.SF2614	(+)
198214.SF0836	(+)
198214.SF0463	(+)
198214.SF3790	(+)
198214.SF3575	(+)
198214.SF1714	(+)
198214.SF1958	(+)
198214.SF1007	(+)
198214.SF1003	(+)
198214.CP0076	(+)
198214.SF2593	(+)
198214.SF2317	(+)
198214.SF0285	(+)
198214.SF1034	(+)
198214.SF2623	(+)
198214.SF1525	(+)
198214.CP0260	(+)
198214.SF1226	(+)
198214.SF0064	(+)
198214.SF1601	(+)
198214.SF3148	(+)
198214.SF0984	(+)
198214.SF3413	(+)
198214.SF3184	(+)
198214.SF3682	(+)
198214.SF2748	(+)
198214.SF2038	(+)
198214.SF2632	(+)
198214.SF2381	(+)

Detailed merged results for each protein sequence

• Detailed merged results as table (merge_results.html)
• Detailed merged results as tab delimited file (merge_results.csv)

Individual results for each protein sequence

• EffectiveT3 predictions using new standard model 2.0.1 (PROTEINS.NEW.EFFECTIVET3)
• EffectiveT3 predictions using old standard model 1.0.1 (PROTEINS.OLD.EFFECTIVET3)
• EffectiveCCBD predictions (PROTEINS.CHAPERONES.TXT)
• T4SEpre bpbAac predictions (T4SEpre_bpbAac_FinalResult.csv)
• T4SEpre psAac predictions (T4SEpre_psAac_FinalResult.csv)
• EffectiveELD predictions (PROTEINS.ELD.TXT)
• Predotar predictions using animal/human model (Predotar_output_modelANIMAL.TXT)
• Predotar predictions using plant model (Predotar_output_modelPLANT.TXT)

Genome based results

Summary

• Gram negative: YES (FDR = 0.5 %)
• Functional Type III secretion system: YES (FDR = 12.5 %)
  Estimated copy number = 1.0 (10/10 KEGG proteins)
• Functional Type IV secretion system: YES (FDR = 7.2 %)
  Estimated copy number = 0.0 (0/10 KEGG proteins)
• Functional Type VI secretion system: NO (FDR = 7.7 %)

Individual results for each secretion system

• List of 100 most important COGs/NOGs for prediction of functional Type III secretion system (T3_top100_COGS.xls)
• List of 100 most important COGs/NOGs for prediction of functional Type IV secretion system (T4_top100_COGS.xls)
• List of 100 most important COGs/NOGs for prediction of functional Type VI secretion system (T6_top100_COGS.xls)
• List of COGs assigned to Type III secretion system in KEGG (T3SS_KEGG_cmp.xls)
• List of COGs assigned to Type IV secretion system in KEGG (T4SS_KEGG_cmp.xls)
• List of COGs assigned to Type VI secretion system in KEGG (T6SS_KEGG_cmp.xls)

Parameters:

==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================