Effective results for Gluconacetobacter sp. SXCC-1 (eggnog40)
Summary
Number of putative secreted proteins: 269
- Predicted by T4SEpre: 48
- Predicted by EffectiveELD: 25 eukaryotic-like domains, contained in 234 proteins (91 high, 143 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): Type IV
Protein based results
Putative secreted proteins (weak evidence indicated by parentheses)
| Protein | EffectiveT3 | EffectiveCCBD | T4SEpre | EffectiveELD | Predotar |
|---|---|---|---|---|---|
| 1004836.SXCC_02780 | (PF03171) (PF14226) | (mitochondrial) | |||
| 1004836.SXCC_03638 | PF01695 | (mitochondrial) | |||
| 1004836.SXCC_02455 | PF01695 | (mitochondrial) | |||
| 1004836.SXCC_04133 | + | mitochondrial | |||
| 1004836.SXCC_01550 | (PF04632) | mitochondrial; ER | |||
| 1004836.SXCC_04072 | PF01695 | (mitochondrial) | |||
| 1004836.SXCC_00755 | (PF02040) | ER | |||
| 1004836.SXCC_00499 | (PF01610) | (mitochondrial) | |||
| 1004836.SXCC_02136 | (PF00665) | ER | |||
| 1004836.SXCC_02138 | (PF01610) | (mitochondrial) | |||
| 1004836.SXCC_01149 | (PF03901) | ER | |||
| 1004836.SXCC_02461 | + | (ER) | |||
| 1004836.SXCC_02463 | (PF00665) | ER | |||
| 1004836.SXCC_02465 | (PF01610) | (mitochondrial) | |||
| 1004836.SXCC_03327 | (PF03022) | mitochondrial | |||
| 1004836.SXCC_02691 | + | (PF03171) (PF14226) | |||
| 1004836.SXCC_01974 | + | (mitochondrial) | |||
| 1004836.SXCC_04753 | PF01695 | (mitochondrial) | |||
| 1004836.SXCC_01471 | PF01695 | (mitochondrial) | |||
| 1004836.SXCC_04239 | + | mitochondrial | |||
| 1004836.SXCC_00224 | + | mitochondrial | |||
| 1004836.SXCC_02481 | (PF14226) | mitochondrial; (mitochondrial) | |||
| 1004836.SXCC_04737 | (PF02112) | ER | |||
| 1004836.SXCC_01123 | (PF04632) | mitochondrial | |||
| 1004836.SXCC_00343 | (PF02040) | ER | |||
| 1004836.SXCC_03525 | PF01695 | (mitochondrial) | |||
| 1004836.SXCC_04888 | PF02371 | (mitochondrial); mitochondrial | |||
| 1004836.SXCC_03993 | PF01695 | (mitochondrial) | |||
| 1004836.SXCC_00239 | (PF13604) | mitochondrial | |||
| 1004836.SXCC_03670 | (PF03022) | ER | |||
| 1004836.SXCC_02651 | (PF02082) | mitochondrial; (mitochondrial) | |||
| 1004836.SXCC_04098 | (PF03022) | mitochondrial | |||
| 1004836.SXCC_00093 | (PF00665) | ER | |||
| 1004836.SXCC_03475 | PF01695 | (mitochondrial) | |||
| 1004836.SXCC_02012 | PF01695 | (mitochondrial) | |||
| 1004836.SXCC_00874 | PF01695 | (mitochondrial) | |||
| 1004836.SXCC_04419 | PF01609 | (ER) | |||
| 1004836.SXCC_01891 | (PF00665) | ER | |||
| 1004836.SXCC_01893 | PF01695 | (mitochondrial) | |||
| 1004836.SXCC_01896 | (PF01610) | (mitochondrial) | |||
| 1004836.SXCC_00615 | (PF13332) | (mitochondrial) | |||
| 1004836.SXCC_01675 | (PF04632) | mitochondrial | |||
| 1004836.SXCC_03929 | (PF02082) | (ER) | |||
| 1004836.SXCC_03031 | (PF01156) | mitochondrial | |||
| 1004836.SXCC_01884 | PF01695 | (mitochondrial) | |||
| 1004836.SXCC_00592 | (PF02082) | (mitochondrial) | |||
| 1004836.SXCC_04905 | (PF02040) | ER | |||
| 1004836.SXCC_02996 | PF01695 | (mitochondrial) | |||
| 1004836.SXCC_02196 | PF01695 | (mitochondrial) | |||
| 1004836.SXCC_02753 | (PF02882) | ER; (ER) | |||
| 1004836.SXCC_01277 | + | ER | |||
| 1004836.SXCC_02189 | (PF02082) | ER | |||
| 1004836.SXCC_02743 | PF01695 | (mitochondrial) | |||
| 1004836.SXCC_03566 | PF01609 | (ER) | |||
| 1004836.SXCC_01867 | PF01695 | (mitochondrial) | |||
| 1004836.SXCC_01049 | (PF01610) | (mitochondrial) | |||
| 1004836.SXCC_01047 | (PF00665) | ER | |||
| 1004836.SXCC_00332 | (PF13604) | (mitochondrial) | |||
| 1004836.SXCC_04257 | PF01695 | (mitochondrial) | |||
| 1004836.SXCC_04046 | (PF02082) | ER | |||
| 1004836.SXCC_00156 | + | mitochondrial | |||
| 1004836.SXCC_00150 | PF01695 | (mitochondrial) | |||
| 1004836.SXCC_00807 | (PF00665) | (mitochondrial) | |||
| 1004836.SXCC_00809 | (PF08267) | ER | |||
| 1004836.SXCC_02959 | PF01695 | (mitochondrial) | |||
| 1004836.SXCC_03570 | + | (ER) | |||
| 1004836.SXCC_00214 | (PF01610) | (mitochondrial) | |||
| 1004836.SXCC_01214 | PF01695 | (mitochondrial) | |||
| 1004836.SXCC_00497 | (PF00665) | mitochondrial; (mitochondrial) | |||
| 1004836.SXCC_00031 | PF01609 | (ER) | |||
| 1004836.SXCC_01422 | PF01695 | (mitochondrial) | |||
| 1004836.SXCC_04867 | PF01695 | (mitochondrial) | |||
| 1004836.SXCC_04860 | (PF07080) | (mitochondrial) | |||
| 1004836.SXCC_02761 | (PF01156) | ER | |||
| 1004836.SXCC_01939 | (PF02040) | ER | |||
| 1004836.SXCC_01739 | + | ER | |||
| 1004836.SXCC_04496 | PF01695 | (mitochondrial) | |||
| 1004836.SXCC_04276 | (PF01610) | (mitochondrial) | |||
| 1004836.SXCC_04274 | (PF00665) | mitochondrial | |||
| 1004836.SXCC_00957 | (PF04632) | (mitochondrial) | |||
| 1004836.SXCC_00950 | + | ER | |||
| 1004836.SXCC_00778 | (PF08267) | (mitochondrial) | |||
| 1004836.SXCC_03974 | (PF03552) | mitochondrial | |||
| 1004836.SXCC_00177 | (PF01610) | (mitochondrial) | |||
| 1004836.SXCC_00178 | (PF01610) | (mitochondrial) | |||
| 1004836.SXCC_03551 | PF01695 | (mitochondrial) | |||
| 1004836.SXCC_04141 | + | ER | |||
| 1004836.SXCC_00541 | (PF00665) | mitochondrial; (mitochondrial) | |||
| 1004836.SXCC_00543 | (PF01610) | (mitochondrial) | |||
| 1004836.SXCC_00542 | PF01695 | ER; (ER) | |||
| 1004836.SXCC_04203 | + | ER | |||
| 1004836.SXCC_04845 | PF02371 | (ER) | |||
| 1004836.SXCC_02137 | PF01695 | (plastid) | |||
| 1004836.SXCC_02464 | PF01695 | (plastid) | |||
| 1004836.SXCC_00215 | PF01695 | (plastid) | |||
| 1004836.SXCC_00367 | PF02371 | (ER) | |||
| 1004836.SXCC_02056 | (PF09330) | (mitochondrial) | |||
| 1004836.SXCC_00658 | (PF13604) | (mitochondrial) | |||
| 1004836.SXCC_04158 | + | (plastid) | |||
| 1004836.SXCC_02087 | + | (mitochondrial) | |||
| 1004836.SXCC_03480 | (PF00665) | (mitochondrial) | |||
| 1004836.SXCC_01895 | PF01695 | (plastid) | |||
| 1004836.SXCC_03745 | + | (mitochondrial) | |||
| 1004836.SXCC_02500 | (PF13604) | (ER) | |||
| 1004836.SXCC_01888 | + | (PF13332) | |||
| 1004836.SXCC_02756 | (PF02882) | plastid | |||
| 1004836.SXCC_03839 | + | (ER) | |||
| 1004836.SXCC_03768 | + | (plastid) | |||
| 1004836.SXCC_01048 | PF01695 | (plastid) | |||
| 1004836.SXCC_02170 | (PF03171) (PF14226) | ||||
| 1004836.SXCC_02785 | (PF03171) (PF14226) | ||||
| 1004836.SXCC_04275 | PF01695 | (plastid) | |||
| 1004836.SXCC_04840 | PF02371 | ||||
| 1004836.SXCC_04848 | PF01609 | ||||
| 1004836.SXCC_02853 | PF02371 | ||||
| 1004836.SXCC_03524 | (PF00665) | ||||
| 1004836.SXCC_02213 | PF01609 | ||||
| 1004836.SXCC_03630 | (PF02082) | ||||
| 1004836.SXCC_03639 | (PF00665) | ||||
| 1004836.SXCC_01912 | (PF00665) | ||||
| 1004836.SXCC_02456 | (PF00665) | ||||
| 1004836.SXCC_02453 | (PF02661) | ||||
| 1004836.SXCC_01312 | PF02371 | ||||
| 1004836.SXCC_01482 | PF02371 | ||||
| 1004836.SXCC_04073 | (PF00665) | ||||
| 1004836.SXCC_00572 | PF02371 | ||||
| 1004836.SXCC_03888 | (PF01156) | ||||
| 1004836.SXCC_00680 | PF02371 | ||||
| 1004836.SXCC_00193 | (PF00665) | ||||
| 1004836.SXCC_02042 | PF01609 | ||||
| 1004836.SXCC_02683 | PF02371 | ||||
| 1004836.SXCC_02918 | PF01609 | ||||
| 1004836.SXCC_01363 | + | ||||
| 1004836.SXCC_01614 | + | ||||
| 1004836.SXCC_00368 | + | ||||
| 1004836.SXCC_00187 | PF01609 | ||||
| 1004836.SXCC_03181 | (PF03552) | ||||
| 1004836.SXCC_02872 | PF01609 | ||||
| 1004836.SXCC_03619 | (PF00042) | ||||
| 1004836.SXCC_04754 | (PF00665) | ||||
| 1004836.SXCC_01472 | (PF00665) | ||||
| 1004836.SXCC_04053 | + | ||||
| 1004836.SXCC_01608 | (PF04632) | ||||
| 1004836.SXCC_00226 | PF01609 | ||||
| 1004836.SXCC_00223 | + | ||||
| 1004836.SXCC_00351 | (PF00042) | ||||
| 1004836.SXCC_03992 | (PF00665) | ||||
| 1004836.SXCC_02112 | + | ||||
| 1004836.SXCC_04231 | PF01609 | ||||
| 1004836.SXCC_00225 | PF02371 | ||||
| 1004836.SXCC_02483 | PF02371 | ||||
| 1004836.SXCC_02486 | (PF03171) | ||||
| 1004836.SXCC_00355 | PF01609 | ||||
| 1004836.SXCC_01748 | (PF09330) | ||||
| 1004836.SXCC_01904 | PF01609 | ||||
| 1004836.SXCC_04083 | (PF03552) | ||||
| 1004836.SXCC_00724 | PF01609 | ||||
| 1004836.SXCC_00438 | PF01609 | ||||
| 1004836.SXCC_00349 | (PF02082) | ||||
| 1004836.SXCC_00348 | (PF00665) | ||||
| 1004836.SXCC_00346 | (PF01988) | ||||
| 1004836.SXCC_04885 | (PF02661) | ||||
| 1004836.SXCC_04880 | (PF02661) | ||||
| 1004836.SXCC_00230 | (PF02661) | ||||
| 1004836.SXCC_01910 | (PF13604) | ||||
| 1004836.SXCC_00089 | (PF01610) | ||||
| 1004836.SXCC_01627 | (PF01156) | ||||
| 1004836.SXCC_00401 | PF02371 | ||||
| 1004836.SXCC_00661 | (PF02661) | ||||
| 1004836.SXCC_04894 | (PF13604) | ||||
| 1004836.SXCC_00248 | PF02371 | ||||
| 1004836.SXCC_02008 | + | ||||
| 1004836.SXCC_00860 | PF02371 | ||||
| 1004836.SXCC_00866 | + | ||||
| 1004836.SXCC_02394 | (PF01156) | ||||
| 1004836.SXCC_00526 | PF01609 | ||||
| 1004836.SXCC_00091 | (PF01610) | ||||
| 1004836.SXCC_02241 | (PF04632) | ||||
| 1004836.SXCC_00412 | PF01609 | ||||
| 1004836.SXCC_00254 | PF02371 | ||||
| 1004836.SXCC_03872 | + | ||||
| 1004836.SXCC_03476 | (PF00665) | ||||
| 1004836.SXCC_02016 | + | ||||
| 1004836.SXCC_02013 | (PF00665) | ||||
| 1004836.SXCC_00875 | (PF00665) | ||||
| 1004836.SXCC_02389 | (PF01156) | ||||
| 1004836.SXCC_01925 | PF01609 | ||||
| 1004836.SXCC_04381 | PF01609 | ||||
| 1004836.SXCC_00609 | (PF02082) | ||||
| 1004836.SXCC_00284 | (PF02661) | ||||
| 1004836.SXCC_03266 | + | ||||
| 1004836.SXCC_02021 | PF01609 | ||||
| 1004836.SXCC_02604 | (PF01988) | ||||
| 1004836.SXCC_00498 | PF01695 | ||||
| 1004836.SXCC_01415 | PF01609 | ||||
| 1004836.SXCC_01892 | (PF00665) | ||||
| 1004836.SXCC_01389 | (PF01610) | ||||
| 1004836.SXCC_00476 | (PF00042) | ||||
| 1004836.SXCC_00277 | PF02371 | ||||
| 1004836.SXCC_00297 | (PF02661) | ||||
| 1004836.SXCC_00100 | PF02371 | ||||
| 1004836.SXCC_02507 | (PF02082) | ||||
| 1004836.SXCC_02505 | (PF02082) | ||||
| 1004836.SXCC_01072 | + | ||||
| 1004836.SXCC_00228 | + | ||||
| 1004836.SXCC_01883 | (PF00665) | ||||
| 1004836.SXCC_01406 | (PF02661) | ||||
| 1004836.SXCC_04169 | + | ||||
| 1004836.SXCC_00447 | PF01609 | ||||
| 1004836.SXCC_00130 | (PF00042) | ||||
| 1004836.SXCC_00133 | (PF00665) | ||||
| 1004836.SXCC_00624 | PF02371 | ||||
| 1004836.SXCC_00627 | PF02371 | ||||
| 1004836.SXCC_04632 | + | ||||
| 1004836.SXCC_04838 | PF01609 | ||||
| 1004836.SXCC_00821 | (PF00665) | ||||
| 1004836.SXCC_02197 | (PF00665) | ||||
| 1004836.SXCC_02373 | PF01609 | ||||
| 1004836.SXCC_01872 | (PF13332) | ||||
| 1004836.SXCC_00587 | + | ||||
| 1004836.SXCC_04334 | (PF04632) | ||||
| 1004836.SXCC_00122 | + | ||||
| 1004836.SXCC_02982 | PF01609 | ||||
| 1004836.SXCC_01564 | (PF02082) | ||||
| 1004836.SXCC_02744 | (PF00665) | ||||
| 1004836.SXCC_03569 | PF01609 | ||||
| 1004836.SXCC_02565 | + | ||||
| 1004836.SXCC_01866 | (PF00665) | ||||
| 1004836.SXCC_01510 | (PF03022) | ||||
| 1004836.SXCC_01199 | (PF00665) | ||||
| 1004836.SXCC_01400 | PF01609 | ||||
| 1004836.SXCC_00481 | (PF02661) | ||||
| 1004836.SXCC_00022 | (PF01610) | ||||
| 1004836.SXCC_04252 | (PF02661) | ||||
| 1004836.SXCC_04258 | (PF00665) | ||||
| 1004836.SXCC_00151 | (PF00665) | ||||
| 1004836.SXCC_02174 | (PF04632) | ||||
| 1004836.SXCC_02779 | (PF01156) | ||||
| 1004836.SXCC_02957 | PF01609 | ||||
| 1004836.SXCC_02958 | (PF00665) | ||||
| 1004836.SXCC_02880 | PF01609 | ||||
| 1004836.SXCC_00740 | (PF01988) | ||||
| 1004836.SXCC_01215 | (PF00665) | ||||
| 1004836.SXCC_01459 | PF02371 | ||||
| 1004836.SXCC_03211 | (PF12513) | ||||
| 1004836.SXCC_04868 | (PF00665) | ||||
| 1004836.SXCC_04861 | PF01609 | ||||
| 1004836.SXCC_02766 | (PF01156) | ||||
| 1004836.SXCC_01423 | (PF00665) | ||||
| 1004836.SXCC_01390 | PF02371 | ||||
| 1004836.SXCC_02787 | (PF07080) | ||||
| 1004836.SXCC_02789 | PF01609 | ||||
| 1004836.SXCC_01840 | PF01609 | ||||
| 1004836.SXCC_04495 | (PF00665) | ||||
| 1004836.SXCC_00557 | PF01609 | ||||
| 1004836.SXCC_00793 | (PF08267) | ||||
| 1004836.SXCC_04277 | (PF13332) | ||||
| 1004836.SXCC_00770 | PF01609 | ||||
| 1004836.SXCC_00017 | (PF01610) | ||||
| 1004836.SXCC_02997 | (PF00665) | ||||
| 1004836.SXCC_03550 | (PF00665) | ||||
| 1004836.SXCC_02977 | PF01609 | ||||
| 1004836.SXCC_04236 | (PF00665) | ||||
| 1004836.SXCC_01942 | (PF01988) | ||||
| 1004836.SXCC_01163 | (PF02882) | ||||
| 1004836.SXCC_00548 | (PF07080) | ||||
| 1004836.SXCC_01543 | PF01609 | ||||
| 1004836.SXCC_00305 | PF02371 | ||||
| 1004836.SXCC_00309 | (PF03171) |
Detailed merged results for each protein sequence
- Detailed merged results as table (merge_results.html)
- Detailed merged results as tab delimited file (merge_results.csv)
Individual results for each protein sequence
- T4SEpre bpbAac predictions (T4SEpre_bpbAac_FinalResult.csv)
- T4SEpre psAac predictions (T4SEpre_psAac_FinalResult.csv)
- EffectiveELD predictions (PROTEINS.ELD.TXT)
- Predotar predictions using animal/human model (Predotar_output_modelANIMAL.TXT)
- Predotar predictions using plant model (Predotar_output_modelPLANT.TXT)
Genome based results
Summary
- Gram negative: YES (FDR = 0.5 %)
- Functional Type III secretion system: NO (FDR = 12.5 %)
- Functional Type IV secretion system: YES (FDR = 7.2 %)
Estimated copy number = 1.6 (16/10 KEGG proteins)
- Functional Type VI secretion system: NO (FDR = 7.7 %)
Individual results for each secretion system
- List of 100 most important COGs/NOGs for prediction of functional Type III secretion system (T3_top100_COGS.xls)
- List of 100 most important COGs/NOGs for prediction of functional Type IV secretion system (T4_top100_COGS.xls)
- List of 100 most important COGs/NOGs for prediction of functional Type VI secretion system (T6_top100_COGS.xls)
- List of COGs assigned to Type III secretion system in KEGG (T3SS_KEGG_cmp.xls)
- List of COGs assigned to Type IV secretion system in KEGG (T4SS_KEGG_cmp.xls)
- List of COGs assigned to Type VI secretion system in KEGG (T6SS_KEGG_cmp.xls)
Parameters:
==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================
Estimated copy number = 1.6 (16/10 KEGG proteins)
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