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Genomes encoding eukaryotic-like proteins

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PF01156 Inosine-uridine preferring nucleoside hydrolase

Copy number in non-pathogens:
Mean=0.96 Stddev=1.30

Genomes significantly enriched in this eukaryotic-like domain (ELD; score >= 4):

Genome Class* ELD score Number of proteins containing this domain
Corynebacterium-like bacterium B27 s 5 8
Bacillus cereus s 4 7
Bacillus cereus s 4 7
Neorhizobium galegae bv. orientalis str. HAMBI 540 s 6 9
Bittarella massiliensis s 30 41
Bacillus cereus s 4 7
Bacillus cereus s 4 7
Bacillus cereus Rock4-18 s 4 7
Bacillus cereus Rock3-29 s 4 7
Bacillus cereus Rock1-3 s 5 8
Bacillus cereus AH676 s 4 7
Rhizobium sp. CF080 s 4 7
Clostridium sp. ATCC 29733 s 28 38
Clostridiales bacterium 1_7_47FAA s 5 8
[Clostridium] bolteae 90A9 s 4 7
[Clostridium] bolteae 90B3 s 4 7
Hungatella hathewayi 12489931 s 6 9
Bacillus cereus s 4 7
Agrobacterium rhizogenes s 4 7
Rhizobium tropici s 4 7
Bacillus cereus s 4 7
Bacillus cereus s 4 7
Bacillus cereus s 4 7
Bacillus cereus s 4 7
Bacillus thuringiensis s 4 7
Bacillus cereus s 5 8
Bacillus cereus s 5 8
Bacillus cereus s 4 7
Bacillus cereus s 4 7
Bacillus thuringiensis s 4 7
Bacillus thuringiensis s 5 8
Bacillus thuringiensis s 4 7
Bacillus sp. FDAARGOS_235 s 4 7
Bacillus cereus s 4 7
Bacillus cereus s 4 7
Bacillus thuringiensis s 4 7
Bacillus cereus s 4 7
Bacillus cereus s 4 7
Bacillus cereus s 4 7
Bacillus mycoides s 4 7
Bacillus thuringiensis s 4 7

*p=pathogen;s=symbiont

Release announcements

News

  • EffectiveDB genome mode fixed

    24.11.20
  • EFFECTIVEELD 5.2: EUKARYOTIC-LIKE DOMAIN PREDICTION UPGRADED TO PFAM 31

    20.08.17
  • EffectiveELD 5.1: Eukaryotic-like domain prediction upgraded to Pfam 29

    24.06.16

Latest publications

  • EffectiveDB-updates and novel features for a better annotation of bacterial secreted proteins and Type III, IV, VI secretion systems.
  • Prediction of microbial phenotypes based on comparative genomics.

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