Metamenu

Effective results for Echinicola pacifica DSM 19836 (refseq)

Summary

Number of putative secreted proteins: 403
- Predicted by T4SEpre: 0
- Predicted by EffectiveELD: 54 eukaryotic-like domains, contained in 403 proteins (121 high, 282 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): None

Protein based results

Putative secreted proteins (weak evidence indicated by parentheses)

ProteinEffectiveT3EffectiveCCBDT4SEpreEffectiveELDPredotar
WP_018475053.1(PF13290) (PF00703) (PF02836) (PF02837) (PF16355)ER
WP_018473500.1(PF00703) (PF02836) (PF02837) (PF16355)ER
WP_018473558.1(PF00703) (PF02929) (PF02836) (PF02837)ER
WP_018473821.1(PF00703) (PF02836) (PF02837) (PF16355)ER
WP_018474915.1(PF00703) (PF02836) (PF02837) (PF16355)ER
WP_018475333.1(PF00703) (PF02836) (PF02837) (PF16355)ER
WP_018475064.1(PF00703) (PF02929) (PF02836) (PF02837)ER
WP_018474547.1(PF16334) (PF16335) (PF17168) (PF08760)(mitochondrial)
WP_018472975.1(PF00703) (PF02929) (PF02836) (PF02837)ER
WP_018475693.1(PF13287) (PF00703) (PF02836) (PF02837) (PF16355)(ER)
WP_018473411.1(PF00703) (PF02836) (PF02837)ER
WP_044201990.1(PF00703) (PF02836) (PF02837)ER
WP_018473461.1(PF00703) (PF02836) (PF02837)ER
WP_018473191.1(PF00728) (PF02838) (PF13287)ER
WP_018475041.1(PF00728) (PF13290) (PF02838)ER
WP_018473368.1PF16347 (PF05592) PF00884ER
WP_044202368.1(PF00703) (PF02836) (PF02837)ER
WP_018472225.1(PF00728) (PF13290) (PF02838)ER
WP_018475058.1(PF04685) (PF12215)ER
WP_018474101.1(PF08531) (PF05592)ER
WP_018473508.1PF01120 (PF16757)mitochondrial
WP_044201999.1PF16347 PF00884ER
WP_026235692.1(PF00728) (PF02838)ER
WP_018475044.1PF16347 PF00884ER
WP_018472341.1PF16347 PF00884ER
WP_018475364.1PF14707 PF00884ER
WP_018473371.1PF17132 (PF02837)ER
WP_018473377.1(PF08531) (PF05592)ER
WP_018474093.1PF14707 PF00884ER
WP_018473777.1PF14707 PF00884ER
WP_018474611.1PF16347 PF00884(mitochondrial)
WP_018475001.1PF16347 PF00884ER
WP_018474107.1PF16347 PF00884ER
WP_018473516.1PF16347 PF00884ER
WP_018473514.1(PF00703) (PF02836) (PF02837) (PF16355)
WP_018473409.1PF16347 PF00884ER
WP_018475664.1(PF00728) (PF02838)ER
WP_026235742.1PF01120 (PF13287)ER
WP_018473543.1(PF08531) (PF05592)ER
WP_018475370.1PF17132 (PF02837)ER
WP_018472183.1(PF08531) (PF05592)(ER)
WP_018475045.1PF16347 PF00884ER
WP_018473384.1(PF08531) (PF05592)ER
WP_018474246.1PF16347 PF00884(ER)
WP_018473522.1PF01120 (PF16757)ER
WP_018475323.1(PF00703) (PF02929) (PF02836) (PF02837)
WP_018474864.1(PF00703) (PF02836)ER
WP_018474110.1(PF08531) (PF05592)ER
WP_018473448.1(PF00728) (PF02838)ER
WP_026235978.1PF14707 PF00884ER
WP_018474106.1PF16347 PF00884mitochondrial
WP_018472129.1(PF08531) (PF05592)ER
WP_018473566.1PF14707 PF00884ER
WP_018474092.1PF16347 PF00884ER
WP_018475056.1PF14707 PF00884ER
WP_018474051.1PF16347 PF00884ER
WP_018475695.1PF16347 PF00884ER
WP_018474800.1PF16347 PF00884ER
WP_044202709.1PF16347 PF00884(ER)
WP_018472395.1(PF13290) PF01120ER
WP_018475696.1PF16347 PF00884ER
WP_018472630.1(PF07715)ER
WP_018475073.1(PF07715)(mitochondrial)
WP_026235645.1(PF00474)ER
WP_018475198.1PF00884ER
WP_018474626.1(PF07715)(mitochondrial)
WP_018474619.1(PF06439)ER
WP_018473870.1(PF07715)ER
WP_018474617.1(PF07715)ER
WP_018475723.1(PF13320)ER
WP_026235824.1PF00884ER
WP_018473888.1(PF12708)ER
WP_026235675.1(PF06439)ER
WP_018474115.1(PF07715)ER
WP_026235834.1(PF01103)ER
WP_026235677.1PF00884ER
WP_018473423.1(PF07715)ER
WP_026235764.1(PF14240)ER
WP_026235943.1(PF07715)ER
WP_018474403.1(PF07715)(ER)
WP_018473865.1(PF07715)ER
WP_018475802.1(PF03629)ER
WP_018474073.1PF00884ER
WP_018474702.1(PF14240)ER
WP_018472330.1(PF06439)ER
WP_018475531.1(PF07470)ER
WP_052308767.1PF00884ER
WP_018472138.1(PF07715)ER
WP_044202078.1(PF07715)ER
WP_018475153.1PF00884(ER)
WP_044202981.1(PF02469)ER
WP_026235787.1(PF07715)ER
WP_044201579.1(PF07715)ER
WP_018474142.1(PF06439)ER
WP_018473399.1(PF07715)ER
WP_018472610.1(PF07715)ER
WP_026235624.1(PF07715)ER
WP_018472136.1PF00884(ER)
WP_018472134.1(PF12708)ER
WP_018476095.1(PF07715)ER
WP_018475704.1(PF07715)ER
WP_018475022.1(PF07715)ER
WP_044202222.1(PF07715)mitochondrial
WP_026235638.1(PF06439)ER
WP_018473385.1(PF05336)(mitochondrial)
WP_018473157.1(PF01103)ER
WP_018472833.1(PF07715)(ER)
WP_026236029.1(PF07715)ER
WP_052308738.1(PF07940)ER
WP_018472978.1(PF09113)ER
WP_018472974.1(PF07715)ER
WP_018472972.1(PF02469)ER
WP_018472976.1(PF16871)ER
WP_018474741.1(PF07715)ER
WP_018474995.1(PF07715)ER
WP_018472376.1PF00884ER
WP_018474189.1PF01120ER
WP_044202729.1(PF13088)ER
WP_026235904.1(PF07715)ER
WP_018475027.1(PF09224)ER
WP_018475031.1(PF07940)ER
WP_018475013.1(PF07940)ER
WP_018474601.1(PF00728)ER
WP_018472239.1(PF00474)ER
WP_018473140.1PF01120ER
WP_018475029.1(PF07470)ER
WP_018474206.1(PF07715)ER
WP_018475087.1(PF07715)ER; (ER)
WP_018472285.1PF00884ER
WP_018474596.1(PF07715)ER
WP_018475426.1(PF07715)ER
WP_018472287.1(PF07715)ER
WP_018473512.1(PF00295)ER
WP_018475762.1(PF13088)ER
WP_018472289.1(PF01103)ER
WP_018475766.1(PF07715)ER
WP_018473836.1(PF07715)ER
WP_018472411.1(PF01103)ER
WP_018472874.1(PF00474)ER
WP_018472396.1(PF07715)ER
WP_018472841.1(PF00474)ER
WP_018473401.1(PF07715)ER
WP_026235977.1(PF07715)ER
WP_018475101.1(PF07715)ER
WP_018471953.1(PF07715)ER
WP_018475692.1PF00884ER
WP_018474061.1PF00884ER
WP_018474148.1(PF07715)ER
WP_018475076.1(PF07715)ER
WP_018475998.1PF00884ER
WP_018473383.1(PF08531) (PF05592)(mitochondrial)
WP_018475042.1PF00884ER
WP_044201638.1(PF00295)ER
WP_018474118.1PF00884ER
WP_018474146.1(PF14498)ER
WP_018475060.1PF00884ER
WP_018472987.1(PF07940)ER
WP_018474227.1(PF07715)ER
WP_026235632.1(PF14498)ER
WP_018472985.1(PF07470)ER
WP_026235981.1(PF07715)ER; (ER)
WP_044202482.1(PF07715)ER
WP_018474917.1(PF07715)ER
WP_018474120.1PF00884ER
WP_018474606.1(PF13290)ER
WP_018475360.1(PF07470)ER
WP_026235660.1(PF07715)ER
WP_026235777.1PF00884ER
WP_018473450.1PF00884ER
WP_018475900.1(PF00474)ER
WP_018474058.1PF01120ER
WP_018475350.1(PF02469)ER
WP_018473379.1PF00884ER
WP_018473452.1(PF07715)ER
WP_018471867.1PF01120ER
WP_018474919.1(PF02469)ER
WP_018472181.1(PF00474)ER
WP_018471855.1(PF07940)ER
WP_018475225.1(PF13088)ER
WP_018472221.1(PF07715)ER
WP_018473468.1PF00884ER
WP_026235845.1(PF07715)ER
WP_018474711.1(PF07715)ER
WP_018473359.1(PF07715)(ER)
WP_026236059.1(PF00474)ER
WP_018474095.1(PF07715)(ER)
WP_018474698.1(PF07715)ER
WP_044202642.1(PF06439)ER
WP_018474924.1(PF07470)ER
WP_044202893.1PF00884ER
WP_018475156.1(PF01103)ER
WP_018475170.1(PF07715)ER
WP_018475023.1(PF07940)ER
WP_018471934.1(PF01103)ER
WP_018475392.1(PF07715)ER
WP_018475858.1(PF07470)ER
WP_018471852.1(PF07715)ER
WP_018474803.1PF00884(ER)
WP_018471819.1(PF07715)ER
WP_026236000.1(PF07715)ER
WP_018473510.1PF00884ER
WP_018472244.1(PF07715)ER
WP_018475856.1PF00884ER
WP_018473820.1PF00884ER
WP_018475755.1PF01120ER
WP_018473407.1(PF02469)ER
WP_018474920.1(PF02469)ER
WP_026235584.1(PF00474)ER
WP_026235868.1(PF07715)ER
WP_018475280.1(PF03629)ER
WP_018473405.1(PF07715)ER
WP_018472174.1(PF07470)ER
WP_018475770.1(PF07715)ER
WP_018473532.1(PF06439)ER
WP_044202780.1PF01120ER
WP_018472996.1(PF13415)ER
WP_018474339.1(PF07715)ER
WP_044202766.1(PF07715)ER
WP_018473665.1(PF07940)ER
WP_018474466.1(PF07715)ER
WP_018472787.1(PF00474)ER
WP_018475193.1(PF07715)ER
WP_018475036.1(PF07715)ER
WP_018474949.1(PF07715)ER
WP_018474794.1(PF07715)ER
WP_018474112.1PF00884ER
WP_018475008.1PF00884ER
WP_018473577.1(PF07715)ER
WP_018475189.1PF00884ER
WP_018475006.1PF00884ER
WP_018474551.1(PF07715)ER
WP_018473513.1PF00884ER
WP_026235654.1(PF07715)ER
WP_018473501.1(PF00474)ER
WP_018474396.1(PF14099)ER
WP_018474100.1PF00884(ER); ER
WP_018473418.1(PF07470)ER
WP_018473446.1(PF13320)ER
WP_018473509.1PF00884ER
WP_018475801.1PF07632ER
WP_018475813.1(PF07715)ER
WP_018475324.1(PF05592)ER
WP_026235948.1(PF07715)ER
WP_026235942.1(PF02469)ER
WP_026235946.1(PF00295)ER
WP_018474060.1PF00884ER
WP_018474062.1PF00884ER
WP_018475043.1(PF14498)ER
WP_018472241.1(PF07715)ER
WP_018473380.1(PF07715)ER
WP_018474050.1(PF07715)ER
WP_018474056.1PF00884ER
WP_018472139.1(PF07470)(ER)
WP_018475063.1PF00884ER
WP_018475217.1(PF06439)ER
WP_018474515.1(PF00474)ER
WP_018474125.1PF17132ER; (ER)
WP_018475055.1PF00884(ER)
WP_018475416.1(PF16338)ER
WP_018473595.1(PF16338)ER
WP_026235554.1(PF07715)ER
WP_018472135.1(PF12708)ER
WP_018473441.1(PF07715)ER
WP_018471835.1PF07632ER
WP_018472192.1(PF07715)mitochondrial
WP_026235531.1(PF07715)ER
WP_018474068.1(PF07715)(ER)
WP_018471833.1PF07632(mitochondrial)
WP_044203089.1(PF02469)ER
WP_018475343.1PF12248ER
WP_026235643.1(PF07715)ER
WP_018473469.1PF00884ER
WP_018473370.1(PF07470)ER; (ER)
WP_026235752.1(PF06439)ER
WP_018473459.1(PF07715)ER
WP_018473457.1(PF00474)ER
WP_018475557.1(PF01030)ER
WP_018472186.1(PF00295)ER
WP_018473872.1PF00884ER
WP_026235923.1(PF07715)ER
WP_018474053.1PF01120ER
WP_018475862.1(PF07715)ER
WP_018472317.1PF01120ER
WP_018472571.1(PF00474)ER
WP_018475141.1(PF07715)ER
WP_044202976.1(PF13088)ER
WP_018475691.1PF00884ER
WP_044201472.1(PF14498)ER
WP_018474457.1(PF07715)ER
WP_018473582.1(PF07715)ER
WP_018475034.1PF17132ER
WP_018472559.1(PF00474)ER
WP_018474583.1(PF07715)ER
WP_018474104.1PF00884mitochondrial; (mitochondrial)
WP_018474951.1(PF10142)ER
WP_018472988.1PF00884ER
WP_018473511.1(PF00295)ER
WP_018473503.1(PF07715)mitochondrial
WP_018475281.1PF17132ER
WP_018475777.1PF01120ER
WP_018475763.1(PF00474)ER
WP_018473525.1PF00884mitochondrial; (mitochondrial)
WP_018473537.1(PF07715)ER
WP_018474078.1(PF07715)(mitochondrial)
WP_026235512.1(PF01103)ER
WP_026235968.1(PF14240)ER
WP_018474501.1(PF07715)ER
WP_018475065.1PF00884(ER)
WP_018475009.1PF00884ER
WP_018475007.1PF00884(ER)
WP_018471846.1(PF07715)(mitochondrial)
WP_018473523.1(PF05336)(mitochondrial)
WP_018473462.1PF00884(ER)
WP_018473373.1PF00884(mitochondrial)
WP_018475048.1(PF07715)(mitochondrial)
WP_018475877.1(PF07715)(ER)
WP_018475690.1PF16347 PF00884
WP_018472983.1(PF00728) (PF02838)
WP_018475118.1(PF07715)(plastid)
WP_018473528.1PF16347 PF00884
WP_018475099.1(PF14498)ER
WP_018475325.1(PF00474)(ER)
WP_018473415.1(PF07715)(plastid)
WP_018475712.1(PF12708)(mitochondrial)
WP_018474064.1PF01120(plastid)
WP_018475059.1(PF04685) (PF12215)
WP_018474260.1(PF00295) (PF12708)
WP_018474931.1(PF07715)(plastid)
WP_018473515.1PF01120 (PF16757)
WP_018474108.1PF00884(mitochondrial)
WP_044201649.1(PF07715)(mitochondrial)
WP_018474054.1PF16347 PF00884
WP_018475349.1(PF07715)(ER)
WP_018473344.1PF16347 PF00884
WP_018472979.1PF00884(ER)
WP_044202664.1PF01120 (PF16757)
WP_018474109.1PF17132
WP_018474609.1(PF07715)
WP_018474117.1(PF07715)
WP_018471848.1PF07632
WP_052308745.1PF00884
WP_018475834.1(PF06439)
WP_018473374.1(PF02837)
WP_018474071.1PF00884
WP_052308765.1(PF03629)
WP_018474263.1(PF07470)
WP_018475033.1(PF07715)
WP_018474202.1(PF05153)
WP_018472666.1(PF07715)
WP_018473518.1(PF07715)
WP_018473419.1PF00884
WP_044202331.1(PF05592)
WP_018475331.1(PF07715)
WP_044201835.1PF10250
WP_018475820.1PF12507
WP_018473661.1(PF07715)
WP_018473663.1(PF07940)
WP_018472155.1PF00884
WP_018474065.1(PF14498)
WP_018474063.1PF00884
WP_018474122.1(PF07470)
WP_018474600.1PF00884
WP_018472358.1(PF14686)
WP_052308754.1(PF07715)
WP_018473343.1PF17132
WP_018472564.1(PF07715)
WP_018471834.1(PF07470)
WP_018475057.1(PF03629)
WP_018472560.1(PF05336)
WP_044202776.1PF01120
WP_018475351.1(PF02469)
WP_018474807.1(PF07715)
WP_018473271.1(PF07715)
WP_018472887.1(PF14099)
WP_018472990.1PF00884
WP_018475012.1(PF07470)
WP_018475068.1PF00884
WP_018472493.1(PF02689)
WP_018472813.1(PF13875)
WP_052308746.1PF00884
WP_018474418.1(PF13088)
WP_052308748.1(PF07715)
WP_018475152.1(PF01103)
WP_018475995.1(PF07715)
WP_018475701.1(PF07715)
WP_044202522.1(PF16338)
WP_018475369.1(PF05336)
WP_018474955.1(PF07715)
WP_018474052.1(PF03629)
WP_018472224.1(PF02469)
WP_018474854.1(PF07715)
WP_018475026.1PF01120
WP_018475004.1(PF07940)
WP_018474780.1(PF01103)
WP_044202270.1(PF07715)
WP_018473412.1(PF07715)
WP_044202909.1(PF06439)
WP_018475694.1PF00884
WP_018474845.1(PF05336)
WP_052308766.1(PF07715)
WP_052308760.1(PF07715)
WP_052308762.1PF00884
WP_018472316.1(PF07715)

Detailed merged results for each protein sequence

Individual results for each protein sequence

Genome based results

Summary

  • Gram negative: YES (FDR = 0.5 %)
  • Functional Type III secretion system: NO (FDR = 12.5 %)
  • Functional Type IV secretion system: NO (FDR = 7.2 %)
  • Functional Type VI secretion system: NO (FDR = 7.7 %)

Individual results for each secretion system

Parameters:

==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=GENOTYPE
EMAIL=
==========================================================